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Skeptical Debunker

The genetic footprint of natural selection - 0 views

  • During evolution, living species have adapted to environmental constraints according to the mechanism of natural selection; when a mutation that aids the survival (and reproduction) of an individual appears in the genome, it then spreads throughout the rest of the species until, after several hundreds or even thousands of generations, it is carried by all individuals. But does this selection, which occurs on a specific gene in the genome of a species, also occur on the same gene in neighboring species? On which set of genes has natural selection acted specifically in each species? Researchers in the Dynamique et Organisation des Génomes team at the Institut de Biologie of the Ecole Normale Supérieure (CNRS/ENS/INSERM) have studied the genome of humans and three other primate species (chimpanzee, orangutan and macaque) using bioinformatics tools. Their work consisted in comparing the entire genomes of each species in order to identify the genes having undergone selection during the past 200,000 years. The result was that a few hundred genes have recently undergone selection in each of these species. These include around 100 genes detected in man that are shared by two or three other species, which is twice as many as might be anticipated as a random phenomenon. Thus a not inconsiderable proportion of the genes involved in human adaptation are also present in the chimpanzee, orangutan or macaque, and sometimes in several species at the same time. Natural selection acts not only by distancing different species from each other when new traits appear. But by acting on the same gene, it can also give rise to the same trait in species that have already diverged, but still have a relatively similar genome. This study thus provides a clearer understanding of the group of genes that are specifically implicated in human evolution (during the past 200,000 years), as it allows the identification of those genes which did not undergo selection in another primate line. An example that has been confirmed by this study is the well-known case of the lactase gene that can metabolize lactose during adulthood (a clear advantage with the development of agriculture and animal husbandry). The researchers have also identified a group of genes involved in some neurological functions and in the development of muscles and skeleton.
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    A further step has been taken towards our understanding of natural selection. CNRS scientists working at the Institut de Biologie of the Ecole Normale Supérieure (CNRS/ENS/INSERM) have shown that humans, and some of their primate cousins, have a common genetic footprint, i.e. a set of genes which natural selection has often tended to act upon during the past 200,000 years. This study has also been able to isolate a group of genes that distinguish us from our cousins the great apes. Its findings are published in PloS Genetics (26 February 2010 issue).
anonymous

Ending The Web Of Diseases Through Genetic Research - 2 views

The study of human DNA and genetic material belonging to other organisms to discover what genes and external environmental factors add to is called Genetic Research. If we find out what causes seve...

genetic research genetic modification

started by anonymous on 17 Jan 15 no follow-up yet
Erich Feldmeier

Cory Abate-Shen: A Molecular Signature Predictive of Indolent Prostate Cancer - 0 views

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    Many newly diagnosed prostate cancers present as low Gleason score tumors that require no treatment intervention. Distinguishing the many indolent tumors from the minority of lethal ones remains a major clinical challenge. We now show that low Gleason score prostate tumors can be distinguished as indolent and aggressive subgroups on the basis of their expression of genes associated with aging and senescence. Using gene set enrichment analysis, we identified a 19-gene signature enriched in indolent prostate tumors. We then further classified this signature with a decision tree learning model to identify three genes-FGFR1, PMP22, and CDKN1A-that together accurately predicted outcome of low Gleason score tumors. Validation of this three-gene panel on independent cohorts confirmed its independent prognostic value as well as its ability to improve prognosis with currently used clinical nomograms. Furthermore, protein expression of this three-gene panel in biopsy samples distinguished Gleason 6 patients who failed surveillance over a 10-year period. We propose that this signature may be incorporated into prognostic assays for monitoring patients on active surveillance to facilitate appropriate courses of treatment.
Erich Feldmeier

Tung, Barreiro, Johnson, Gilad Social stress affects immune system gene expression in m... - 0 views

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    "Previous research on rhesus macaques discovered that social rank influenced components of the stress response, brain, and immune system. With gene chip technology for measuring the expression of over 6,000 different genes, Tung, Gilad and colleagues at Yerkes, Emory University, and Johns Hopkins looked for the first time in primates at the effects of social rank on genetic function. Comparing 49 different female monkeys of different rank revealed significant changes in the expression of 987 genes, including 112 genes associated with immune system function. The result fits with data in monkeys where low rank and chronic stress lead to compromised immune function, and, more loosely, with human studies linking low socioeconomic status and high social stress to elevated disease risk."
Erich Feldmeier

Hug the Monkey, Oxytocin and others - 0 views

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    "Empathy Linked to Gene -- and We Can Tell Variations in the genes for oxytocin receptors may influence empathy -- and we can tell who's got them in 20 seconds. In the study, by Aleksandr Kogan of UC Berkeley, 24 couples provided DNA samples and then the couples recounted to each other a time when they had suffered. The conversations were videotaped. Then, observers wached 20-second segments of the videos and were asked to rate each person as kind, trustworthy and compassionate. The observers tended to pick the people in the couples who had a variation in the oxytocin receptor gene known as the GG genotype. It's interesting enough that empathy might be linked to variations in our genes. And also interesting that we humans are so exquisitely sensitive to social cues that we can easily and quickly pick this out."
Erich Feldmeier

@PeterSpork #epigenetik #sleep BBC News - How much can an extra hour's sleep change you? - 0 views

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    Dr Simon Archer and his team at Surrey University were particularly interested in looking at the genes that were switched on or off in our volunteers by changes in the amount that we had made them sleep. "We found that overall there were around 500 genes that were affected," Archer explained. "Some which were going up, and some which were going down." What they discovered is that when the volunteers cut back from seven-and-a-half to six-and-a-half hours' sleep a night, genes that are associated with processes like inflammation, immune response and response to stress became more active. The team also saw increases in the activity of genes associated with diabetes and risk of cancer. The reverse happened when the volunteers added an hour of sleep. So the clear message from this experiment was that if you are getting less than seven hours' sleep a night and can alter your sleep habits, even just a little bit, it could make you healthier
Walid Damouny

1 gene lost = 1 limb regained? Scientists demonstrate mammalian regeneration through si... - 1 views

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    "A quest that began over a decade ago with a chance observation has reached a milestone: the identification of a gene that may regulate regeneration in mammals. The absence of this single gene, called p21, confers a healing potential in mice long thought to have been lost through evolution and reserved for creatures like flatworms, sponges, and some species of salamander. In a report published today in the Proceedings of the National Academy of Sciences, researchers from The Wistar Institute demonstrate that mice that lack the p21 gene gain the ability to regenerate lost or damaged tissue."
Erich Feldmeier

Fred H. Gage and Alysson R. Muotri Jumping Genes in the Brain Ensure That Even Identica... - 0 views

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    "So-called jumping genes, segments of DNA that can copy and paste them­selves into new places in the genome, can alter the activity of full-length genes. Occasionally they will turn on neighboring genes in these locations. That activity occurs more in the brain than other areas, resulting in different traits and behaviors, even in closely related individuals. These mobile genetic elements may also turn out to play a role in people's disposition to psychiatric disorders"
Janos Haits

Expression Atlas < EMBL-EBI - 0 views

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    "The Expression Atlas provides information on gene expression patterns under different biological conditions. Gene expression data is re-analysed in-house to detect genes showing interesting baseline and differential expression patterns."
thinkahol *

Jumping genes provide extensive 'raw material' for evolution, study finds - 0 views

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    ScienceDaily (June 2, 2010) - Using high-throughput sequencing to map the locations of a common type of jumping gene within a person's entire genome, researchers at the University of Pennsylvania School of Medicine found extensive variation in these locations among the individuals they studied, further underscoring the role of these errant genes in maintaining genetic diversity.
Charles Daney

Mystery of Bird Maleness Partly Solved - 0 views

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    In a recent study, researchers show that a gene called DMRT1 found only on the Z chromosome partly explains bird "maleness". When a ZZ embryo gets less DMRT1, the embryos start to take on some female traits. These studies show us that bird gender can be partly explained by genetics. Not having enough of a single gene can keep a bird from becoming a bona fide male bird. But this doesn't rule out the possibility of a female gene being on the W chromosome. Scientists just haven't yet found one.
Charles Daney

The Great Beyond: Alzheimer's genes identified - 0 views

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    Three new genes associated with Alzheimer's have been discovered, to the delight of researchers in the field. In two papers published in Nature Genetics, two teams describe how they compared the genomes of sufferers to healthy controls to identify potential gene variations leading to the disease.
Charles Daney

After Years of Search, Breakthrough Discoveries of Alzheimer's Genes - TIME - 0 views

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    Fifteen years since the last discovery of its kind, scientists have finally identified a new set of genes that may contribute to Alzheimer's disease. The three new genes, known as clusterin, complement receptor 1 (CR1) and PICALM, were uncovered by two separate research groups.
Charles Daney

Genes That Make Us Human -- ScienceNOW - 0 views

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    Finding genes that have evolved in humans among our genome's 3 billion bases is no easy feat. But now, a team has pinpointed three genes that arose from noncoding DNA and may help make our species unique.
anonymous

Genetic Engineering In Fruits For Sustained Productivity - 2 views

There are a number of countries in the world that are considered as major players in horticulture. A number of important fruits and vegetable such as - mango, papaya, apple, tomato, carrot, etc. ar...

growing tomatoes genetically modified plants genetics research

started by anonymous on 07 Jan 15 no follow-up yet
Janos Haits

GeneMANIA - 0 views

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    GeneMANIA helps you predict the function of your favourite genes and gene sets.
Erich Feldmeier

@biogarage Sick Bees - Part 3: The Bee Immune System @ Scientific Beekeeping - 0 views

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    "Note that the antimicrobial peptides are produced largely in the fat bodies-so there would be less of this sort of response in forager bees, which don't maintain their fat bodies. This makes sense, since foragers aren't expected to live for long. However, keep in mind that the bees in protein-hungry colonies are unable to develop their fat bodies fully-this one point where nutrition ties in to immunity. Surprisingly, Jay Evans found that these genes are not upregulated in bees from CCD colonies, even though the bees are full of pathogens! There are a few potential explanations for this finding that come to mind: The bee hemocytes are not recognizing the pathogens as foreign (suppression of recognition systems, perhaps by viruses?). The colonies could be protein-starved. Something is suppressing the transcription of the genes, or their translation to peptides. Note that viruses can do this very thing, which I feel may be a big clue!"
thinkahol *

The gene-environment enigma - 0 views

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    ScienceDaily (Dec. 3, 2010) - Personalized medicine centers on being able to predict the risk of disease or response to a drug based on a person's genetic makeup. But a study by scientists at Washington University School of Medicine in St. Louis suggests that, for most common diseases, genes alone only tell part of the story.
Walid Damouny

Contagious cancer thrives in dogs by adopting host's genes - 2 views

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    An curious contagious cancer, found in dogs, wolves and coyotes, can repair its own genetic mutations by adopting genes from its host animal, according to a new study in the journal Science.
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