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katherine-medina

Peptidomimetic antibiotics disrupt the lipopolysaccharide transport bridge of drug-resi... - 0 views

  • Recently, naturally occurring peptides were proposed to interfere with the function of proteins constituting the lipopolysaccharide
  • periplasmic
    • katherine-medina
       
      The space in between the inner and outer membranes of gram-negative bacteria
  • Thanatin, a 21–amino acid defense peptide isolated from the gut of the hemipteran insect Podisus maculiventris (18), exhibits broad-spectrum antimicrobial activity
    • katherine-medina
       
      I wonder what other peptides do so as well?
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  • We hypothesized that thanatin mainly acts as a competitive inhibitor of the protein-protein interactions mediating the Lpt bridge assembly
  • Thanatin, however, is not a suitable drug candidate for further development due to poor drug-like properties and rapid emergence of resistance
    • katherine-medina
       
      Why/How does thanatin have poor drug-like properties?
  • β-jellyroll
    • katherine-medina
       
      structure found in proteins
  • Here, we introduce thanatin-derived synthetic macrocyclic peptides found after a substantial medicinal chemistry effort.
    • katherine-medina
       
      Essentially they synthetically created it
  • Development of resistance against thanatin was observed after 1 day of passaging in both E. coli and K. pneumoniae and is characterized by a spontaneous FOR of 1.2 × 10−6 for E. coli at 4× MIC
    • katherine-medina
       
      That is kinda scary to think about
  • genome sequencing of a diverse panel of thanatin-resistant strains confirmed on-target modifications on LptA as the main resistance determinant in E. coli and K. pneumoniae.
  • The attractive in vitro and in vivo profile of these new antibiotics, coupled with their novel mechanism of action, showing no cross-resistance to standard of care antibiotics, may provide clinicians with additional treatment options to fight AMR, either in combination with SoC or as stand-alone antibiotics.
    • katherine-medina
       
      It is interesting to look around that these other methods that can fight off bacteria.
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    An article showing a new class of antibiotics known as a peptidomimetic antibiotic.
Grant Reed

Study Finds Carrying Pollen Heats Up Bumble Bees, Raising New Climate Change Questions - 3 views

  • This new understanding of active bumble bee body temperatures raises questions about how these species will be impacted by a warmer world due to climate change.
    • Grant Reed
       
      Trying out the highlight feature. This might be an interesting research topic.
Sean Nash

Science Daily: News & Articles in Science, Health, Environment & Technology - 3 views

  • Your source for the latest research news
    • Sean Nash
       
      You'll want this resource...
Sean Nash

New patch might replace some finger-prick testing of blood sugar - 2 views

  • Teen’s color-changing device tests glucose in sweat to signal when insulin is needed
    • Sean Nash
       
      This is from a 2023 ISEF project just last week!
Isabella Tungjaroenkul

The new human pangenome could help unveil the biology of everyone - 0 views

  • Being able to assess where some people have extra DNA and others are missing DNA, called structural variants, adds a more nuanced view of human genetics, O’Connor says, revealing more of its complexity (SN: 4/10/09).
  • Conversely, another study found that the very short arms of certain chromosomes, including chromosomes 13, 14 and 21, are becoming more like each other as they swap DNA.
katherine-medina

IJMS | Free Full-Text | Antioxidant Versus Pro-Apoptotic Effects of Mushroom-Enriched D... - 0 views

  • In addition, the gut microbiota has also been described to be modulated by mushroom bioactive molecules, with implications in reducing liver inflammation during NAFLD progression.
  • non-alcoholic steatohepatitis (NASH)
    • katherine-medina
       
      I like the abbreviation
  • NASH is currently the third most common indication for liver transplantation in the United States and accounts for 10% of all HCC cases in Europe
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  • The increase in nutrient availability causes systemic metabolic alterations that lead to an increase in hepatic mitochondrial respiration as well as changes in the mitochondrial lipid membrane composition.
  • They are also rich in phenolic acids, such as hydroxybenzoic and hydroxycinnamic acid, flavonoids, tocopherols, ascorbic acid and carotenoids that are known for their antioxidant activity
    • katherine-medina
       
      They are high in polyphenols, just like I had thought, I do wonder if they have tried to single out a certain flavonoid or stilbene in order to determine whether or not it was the mechanism that caused the positive reaction.
  • Of note, indeed NAFLD patients present a “metabolic inflexibility”, that is, a reduced capacity to switch back from
    • katherine-medina
       
      I did not know that
  • The increased levels of β-oxidation seem to result in an increase in citrate within the mitochondrial matrix that can be transported to the cytosol via the citrate-malate shuttle and converted to acetyl-CoA and oxaloacetate by the enzyme ATP-citrate lyase [90,106]. Indeed, NAFLD patients present increased citrate levels in plasma
  • An alternative explanation for the deficient mitochondrial respiration might be the alterations in the mitochondria lipid composition, which are already present in steatosis.
  • As defined by mitohormesis, ROS production is physiological at low levels, acting as a crucial effector in proliferation, expression of antioxidant enzymes and insulin signalling. However, high levels of ROS formation causes oxidative stress and cell damage by reacting with its different components [90,114,115]. Oxidative stress occurs when the antioxidant capacity of the cell is not sufficient to neutralize the overproduction of ROS. ROS generation causes the peroxidation of phospholipids and cardiolipin at the mitochondrial membrane
  • All these mechanisms seem to be involved in the progression from NAFL to NASH. Indeed, NASH patients present increased ROS production, DNA damage, as measured by 8-Oxo-2’-deoxyguanosine (8OHdG) levels, and hepatic lipid peroxidation coupled with decreased expression of ETC Com
    • katherine-medina
       
      So essentially NASH patients have a higher level of ROS which damages their DNA. increase of ROS = DNA damage
  • In parallel, the negative regulation on the inhibitor of apoptosis proteins (IAPs) mediated by the translocation of a series of IAP antagonists such as Smac, HTRA2/Omi and apoptosis-related protein in the TGF-ß signalling pathway (ARTS) to the cytosol, results in the release and activation of caspases
  • Aiming at weight loss, calorie-restricted diets and regular physical activity can improve hepatic mitochondria dysfunction by decreasing FFA liver input and alleviating oxidative stress.
  • New therapies need to be developed to target NAFLD and NASH,
    • katherine-medina
       
      Are there any new therapies to treat NASH and NAFLD
  • showed lipid metabolism-modulating properties in the liver
  • This may lead to a decrease in lipogenesis and a concomitant increase in β-oxidation that could explain the reduction in IHTG content [203]. Similarly, the supplementation with a 1% aqueous extract of A. cinnamomea for 8 weeks reduced the expression of leptin and increased the expression of adiponectin, which was accompanied by an increase of AMPK and PGC-1α and a reduced expression of ACC, FAS and SREBP
  • IHTG content that was similar to the positive control group, treated with rosiglitazone, a PPAR-agonist antidiabetic drug
    • katherine-medina
       
      Interesting, I wonder if there is more that can be done with this extract with these types of effects.
  • herefore, these studies suggest a pivotal capacity of mushroom extracts to counteract the detrimental oxidative damage of mitochondria in NAFLD.
  • which seems to exacerbate NASH. H2O2 over-production may open the mPTP, while its transmembrane diffusion to the cytoplasm may even result in highly detrimental OH• formation. [93,131,132]. In contrast, the capacity of mushroom extracts from species such as Pleurotus ostreatus (Jacq.) P. Kumm. (oyster mushroom) or G. lucidum to elevate the entire antioxidant defence system of hepatocytes, seems a more promising therapeutic effect against the oxidative stress in NASH.
  • . Such evidence further supports the potential of G. lucidum extracts in reversing mitochondrial dysfunction in NAFLD.
  • In this line of research, novel therapies aim to target apoptosis via mitochondria, using molecules that mimic BH3 proteins and disrupt the interactions of pro-apoptotic and anti-apoptotic proteins.
  • Both aqueous and ethanol extracts, or isolated compounds (GL22 from Ganoderma leucocontextum T.H Li, W.Q. Deng, Dong M. Wang & H.P. Hu) increased the pro-apoptotic Bax to anti-apoptotic Bcl-2/Bcl-xL ratio
  • The antitumorigenic effects of mushroom extracts and isolated compounds have also been demonstrated in in-vivo xenograft models, resulting in tumour size reduction and increased animal survival rates (Table 2). Furthermore, in the HCC Huh7 xenograft mice model, fatty acid binding proteins
  • Therefore, the mechanisms by which mushroom extracts or isolated compounds induce mitochondrial-related apoptosis pathways are diverse and may be related with specific bioactive compounds. Modulation of pathways crucial for cell survival and alterations in lipid homeostasis seem to be related with the pro-apoptotic effects observed in HCC cell lines and in in-vivo xenograft models.
    • katherine-medina
       
      Cool
  • To sum up, mitochondria play a central role in the pathophysiology and progression of NAFLD as well as in the development of HCC, which can be a late-stage consequence of NASH. Hepatic mitochondria undergo bioenergetic remodelling to face the metabolic burden imposed by the increased FFAs load secondary to systemic IR. In turn, a decompensation of these processes may result in ROS formation and mitochondrial dysfunction, contributing to the development of NASH. Lastly, hepatic mitochondria also seem to be involved in anti-apoptotic oncogenic processes driving HCC. Targeting mitochondrial dysfunction is thus a promising approach for the treatment of the NAFLD continuum. The following section describes some of the in-vitro and in-vivo studies on the beneficial effects of mushroom-enriched diets or mushroom-derived compounds/extracts (Box 2) in preventing/reverting such liver damage.
  • This distinct property of mushroom-based therapy or -containing diet is especially relevant in the multifactorial context of NAFLD and especially NASH, where systemic synergistic metabolic alterations need to be addressed.
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    An article detailing a bit of the effects that mushrooms can have on the liver's mitochondrial cells.
Sean Nash

What Exactly Is 'New Car Smell'? - 0 views

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    I feel like this could form the basis of a student project if we could find a way to measure the VOCs inside the cabin of vehicles and get a dealership or two to give us access.
Sean Nash

Airplane Noise Exposure May Increase Risk of Chronic Disease | SPH - 0 views

  • “Prior research has shown that aircraft noise can elevate stress responses and disturb sleep, but there has been mixed evidence of any links with body mass index,” says study lead and corresponding author Matthew Bozigar, assistant professor of epidemiology at OSU and a former postdoctoral associate at SPH. “We were surprised to see a fairly robust link between aircraft noise and higher body mass index among women across the US.”
    • Sean Nash
       
      Again, this reminds me of the UCSD juncos and the increased stressors they must endure to live in an urban environment. However, we must remember that just because their emerging population in and around the UCSD campus is successful, it comes with a cost of shorter lifespans, increased mortality, etc. Very interesting stuff.
  • These new findings underscore the role of the environment on one’s risk of chronic disease.
  • Junenette Peters, associate professor of environmental health, and colleagues examined airplane noise exposure and self-reported BMI and other individual characteristics among nearly 75,000 participants living around 90 of the major US airports
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  • The team examined aircraft noise levels every five years from 1995 to 2010, using a day-night estimate (DNL) that captures the average noise level over a 24-hour period and applies a 10 dB adjustment for aircraft noise occurring at night, when background noise is low.
  • Although the team acknowledges that BMI is a suboptimal metric, the independent and strong association between more aircraft noise exposure and higher BMI that they observed is notable.
  • “We can only hypothesize about why we saw these regional variations, but one reason may relate to the era of regional development, building characteristics, and climate which may affect factors such as housing age, design, and level of insulation,” says Peters. “Regional differences in temperature and humidity may influence behaviors such as window opening, so perhaps study participants living in the West were more exposed to aircraft noise due to open windows or housing type, which allowed more noise to penetrate.”
  • Previous data suggest that Black, Hispanic, and low-income populations are disproportionately exposed to aircraft noise. The participants in the NHS study groups were primarily White and of mid-level socioeconomic status. 
  • “We need to study the potential health impacts of environmental injustices in transportation noise exposures alongside other environmental drivers of poor health outcomes” Bozigar says. “There is a lot more to figure out, but this study adds evidence to a growing body of literature that noise negatively impacts health.”
Sean Nash

Mysterious Underwater Acoustic World of British Ponds Revealed in New Study | Current S... - 3 views

  • The previously hidden and diverse underwater acoustic world in British ponds has been revealed by a team of researchers at the University of Bristol.
    • Sean Nash
       
      So... my immediate thought is: How cool would it be to do this here? One thing we DO have: PONDS. See if this *sounds* interesting. Get it? ;)
  • Acoustic monitoring has been shown to effectively survey birds and monkeys in rainforests, and marine mammals in the oceans. However, freshwater environments have remained largely unexplored despite their diverse soundscapes.
    • Sean Nash
       
      BOOM. Again, "relatively unexplored" is super exciting verbiage to me. Acoustics. Hydrophones. Is this feasible? Is the equipment affordable? If not, could we borrow one? Dig into it. What are the possibilities?
  • analysis of the audio files revealed clear daily acoustic activity cycles in each pond
    • Sean Nash
       
      Aside from the exploratory surveys you would do just to see "what's out there" and assess what we CAN learn from listening to a pond, you could make it experimental by comparing ponds you've assessed the health of by other means. In other words, do acoustic comparisons between two ponds correlate with what you find by doing a macroinvertebrate sampling? I really LIKE the possibilities in this one!
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  • Typically, a nocturnal chorus is made by aquatic insects that compete to attract mates by producing strange scratching sounds as they rub their genitals against their abdomens. During the daytime, however, aquatic plants dominate the underwater orchestra with rhythmic whining and ticking sounds produced as tiny oxygen bubbles are released by plants respiring in the hot sun.
  • Using this acoustic method, the presence of species, and a determination of ecological health, can be inferred simply by listening to the natural world without disturbing the environment or harming the plants and animals within it.
    • Sean Nash
       
      Here is the obvious value proposition if you could work this out.
  • Publication: Jack A. Greenhalgh, et al., Diel variation in insect-dominated temperate pond soundscapes and guidelines for survey design, Freshwater Biology (2023). DOI: 10.1111/fwb.14092.
    • Sean Nash
       
      BEST THING YET: Here is the FULL TEXT of the actual research paper!
Sean Nash

Microwaving an insecticide restores its mosquito-killing power - 2 views

  • Heating an insecticide can give it new life.
    • Sean Nash
       
      Wait, what? Do say more.....
  • Microwaving the insecticide deltamethrin rearranges its crystal structure but doesn’t change its chemical composition. The rearrangement renews deltamethrin’s ability to kill mosquitoes that have become resistant to the insecticide, researchers report April 21 in Malaria Journal.
    • Sean Nash
       
      Hmmmm... something similar to this smells like: feasibility.
  • The microwave worked just as well, but Kahr cautions that people shouldn’t use the same microwave for heating food and insecticides.
    • Sean Nash
       
      Ha! No kidding??
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  • insecticide resistance is a growing problem
  • It is encouraging that heated insecticide killed highly resistant mosquitoes, says Hemingway, who directs the Infection Innovation Consortium, a public-private effort to find new ways to combat infectious diseases. But, she says, “this is not something we can take and use that tomorrow.”
    • Sean Nash
       
      OK.... this is how you can find an opening (not saying THIS ONE is necessarily, but, when you see language like: "we can't really do it just yet," that is a screaming opportunity to see what we MIGHT be able to add to that.
  • It’s not certain that the heat-treated deltamethrin would retain its more potent crystal structure through the net-making process.
  • Kahr’s team is working on incorporating the heat-treated crystal into nets.
  • “There are all kinds of social and cultural things that you could propose from a scientific perspective that wouldn’t be welcomed by a community of homeowners.”
    • Sean Nash
       
      Again... this reads: "potential research opportunity."
  • Kahr and colleagues previously discovered that heating deltamethrin changed its crystal structure, which let it work faster
elijahjenkins

Fluorine-based new drug synthesis at lightning speed -- ScienceDaily - 0 views

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    Researchers synthesize fluorine-based compound via rapid biphasic (gas and liquid) mixing.
Hannah Herrera

Growing blood stem cells in the lab to save lives -- ScienceDaily - 0 views

  • Hematopoietic stem cells
  • bone marrow is damaged and no longer able to produce healthy blood cells
  • Though cytokines were once believed to be indispensable for ex vivo HSC growth, the research team hypothesized other new approaches as suitable alternatives.
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  • ompound called UM171,
  • specific polymer, improved the results by supporting long-term HSC expansion.
katherine-medina

Dandelion root extract affects colorectal cancer proliferation and survival through the... - 0 views

  • of an aqueous dandelion root extract
  • caspase-8 activation was not essential for the induction of cell death in colon cancer cells as an inhibition of caspase-8 activation did not alter the cytotoxicity of DRE
  • We have been able to identify four pharmacologically active components, α-amyrin, β-amyrin, lupeol and taraxasterol, in two out of the six bioactive fractions, but the anti-cancer activities of the individual compounds were not as strong as that of the unfractionated DRE indicating, clearly, the benefits of using the whole extract.
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  • which might represent a novel non-toxic alternative to conventional cancer therapy available today.
  • These results clearly indicate that dandelion root extract can inhibit the ability of colorectal cancer cells to migrate and invade, and therefore metastasize to secondary locations.
    • katherine-medina
       
      Wow. I like to see that in 3 different studies DRE was proven to selectively pick the cancer cells, and ignore the normal cells.
  • morphological differences in tissue slices between the control untreated and the DRE treated group
  • aken together, these results established that systemic oral intake of the DRE was safe and its anti-cancer efficacy should be further investigated.
    • katherine-medina
       
      I love the fact that they yet again state that I should look more into this topic.
  • , but the DRE treatment efficiently suppressed the growth of both p53 WT and p53 mutant tumors in-vivo (Figure 4B – 4C)
    • katherine-medina
       
      great, they suppressed the growth of the tumors.
  • with no difference between the control and DRE treated samples of NCM460
    • katherine-medina
       
      I would not have thought that the mitochondria would be left alone by the drug.
  • We observed a decrease in the viability of cells treated with α-amyrin, with 10 μM as the most effective concentration.
    • katherine-medina
       
      Hmm. the beginnings of narrowing down what it is about the plant that is able to fight cancer.
  • The results showed a progressive destabilization of the mitochondrial membrane following the DRE treatment, which was observed as early as 30 minutes post treatment (Figure ​6C). Pro-caspase-8 (green) was localized in the mitochondria (red) in control untreated cells; however, following the DRE treatment, activated caspase-8 was released from the mitochondria into cytoplasmic space, as indicated by the dispersed green fluorescence (Figure ​6C
    • katherine-medina
       
      Pro-capase-8 helps to fight against the cancer
  • suggesting that in HT-29 colorectal cancer cells the DRE-induced cell death was caspase-8 independent.
    • katherine-medina
       
      So essentially caspase 8 had nothing to do with it
  • Others suggest that following activation, caspases re-localize to the mitochondria, where they interact with other pro-apoptotic proteins during the progression of apoptosis [15]. A third option, put forward by Qin and colleagues, suggests that inactive caspases are kept in the mitochondria, but following apoptotic stimuli and activation, they are released from the mitochondria into the cytoplasmic peri-nuclear space [
  • However, these results indicate that DRE and its anti-cancer components must be absorbed and circulated, in order to reach the site of the tumor (in order to inhibit tumor growth).
    • katherine-medina
       
      So it needs to be drank, or swallowed in a pill form to work.
  • , we confirmed the vulnerability of cancer cell mitochondria by showing that the DRE treatment led to a decrease in the mitochondrial membrane potential and increase in ROS levels in the isolated mitochondria.
  • caspase-8 specific inhibitor, IETD-fmk, did not change the DRE response in these cells. This was in contrast to our previous study in leukemia and pancreatic cancer cells
    • katherine-medina
       
      For each different cancer a new slightly different result is produced
  • he pro-apoptotic genes including Caspase-1, Interferon gamma and the TNF ligands and receptors, were up-regulated in HT-29 cells, prior to the apoptosis induction, while the same genes were down-regulated in NCM460 cells.
  • Previous findings show that taraxasterol has anti-inflammatory and chemopreventive activit
  • suggesting its importance in the anti-cancer activity of dandelion root extract, especially on the expression levels of COX-2. Additionally, we show that 10 μM lupeol is not very effective on its own
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    Yet another article about how DRE can fight against cancer.
Sean Nash

Camouflaging wheat with a wheat smell could be a new approach to pest control - 1 views

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    This is a simple concept I wanted to toss out there. A sort of "drowning sensory input" in order to "make finding less effective" sort of approach. I wonder if there are other things this concept might be applied to?
Sean Nash

Study shows experimental evidence of an altruistic nature in small convict cichlid fish - 0 views

  • Study shows experimental evidence of an altruistic nature in small convict cichlid fish
    • Sean Nash
       
      This is a big favorite model organism for me and for a handful of former students. They are fascinating little fish with complex behaviors. However, the struggle is always: studies with vertebrate model organisms are always subject to far more scrutiny and paperwork. You have to prove beyond the shadow of a doubt that your study is not invasive, and you have a proper plan for their care before/during/after experimentation. I am actually switching out the back aquarium (that previously had African Cichlids) for these in August.
Hannah Herrera

Space travel alters gene expression in white blood cells, weakening our immune system -... - 1 views

  • Space travel alters gene expression in white blood cells, weakening our immune system
    • Hannah Herrera
       
      very interesting article, there is a conclusion with insights to this underlining issue in the "read original paper" link in red. I overall think its a ear pricking issue that has yet to be solve or given the clear conclusion as to why it happens in the first place.
  • These observations suggest that our immune system might be weakened by space travel.
    • Hannah Herrera
       
      could it have a possible connection with the strong gravitational pull while actually going up to space? (like the continuing feeling of a steep rollercoaster drop).
  • pre-flight strength: the length of this period is likely to depend on age, sex, genetic differences, and childhood exposure to pathogens.
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  • change in gene expression of leukocytes under microgravity is triggered by ‘fluid shift’, where blood plasma is redistributed from the lower to the upper part of the body, including the lymphatic system. This causes a reduction in plasma volume by between 10% and 15% within the first few days in space. Fluid shift is known to be accompanied by large-scale physiological adaptations, apparently including altered gene expression.
Xander Kleiber

Energy-efficient computing | MIT Energy Initiative - 2 views

  • 1’s are literally thrown away, and that wasted energy is dissipated as heat.
    • Xander Kleiber
       
      In logic gates specifically, because there are cases where a 1 goes in and a 0 can come out, that 1 (directly represented by electrical voltage) gets wasted in the computation and is released as heat.
  • the inputs are 1-0 and 0-1, and the output is 1-0. That setup is wasteful: An incoming 1 is lost during the computation. The researchers solve that problem by retaining the extra inputs as “garbage bits” that carry useless information (see the bottom example). The 1-0 order doesn’t matter, but now the number of 1’s is preserved after the computation.
    • Xander Kleiber
       
      Seems like a great way to solve the issue. However, I don't see anywhere else in the article any sort of actual circuit design/implementation of said solution...
  • On the energy front, the goal is to conserve all information—not just the 1’s but the 0’s as well. Their approach is based on “reversible computing,” an idea first proposed in the 1970s.
    • Xander Kleiber
       
      Expanded upon later.
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  • “If you can play everything backwards, then no energy has escaped during your computation,” says Demaine.
    • Xander Kleiber
       
      So in reversible computing, if an algorithm can be reversed, that means no information (and therefore no 1's, or measures of voltage) are wasted, resulting in an even lower production of waste.
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    Overall, this seems like a decent course of study. After all, mentioned throughout the article is something called "Landauer's limit," which is a limit to the efficiency of computing devices using the current, wasteful methods. Also mentioned briefly in the article is that we are continually getting much closer to this limit. This makes it a timely issue, along with the fact that not many people have elaborated on its implications or tried implementing it.
  •  
    This is really interesting... though I'm sure I would benefit from a back-and-forth conversation to make sure I'm understanding what I think I am.
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