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Jérôme OLLIER

When Imagery and Physical Sampling Work Together: Toward an Integrative Methodology of ... - 0 views

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    Imagery has become a key tool for assessing deep-sea megafaunal biodiversity, historically based on physical sampling using fishing gears. Image datasets provide quantitative and repeatable estimates, small-scale spatial patterns and habitat descriptions. However, taxon identification from images is challenging and often relies on morphotypes without considering a taxonomic framework. Taxon identification is particularly challenging in regions where the fauna is poorly known and/or highly diverse. Furthermore, the efficiency of imagery and physical sampling may vary among habitat types. Here, we compared biodiversity metrics (alpha and gamma diversity, composition) based on physical sampling (dredging and trawling) and towed-camera still images (1) along the upper continental slope of Papua New Guinea (sedimented slope with wood-falls, a canyon and cold seeps), and (2) on the outer slopes of the volcanic islands of Mayotte, dominated by hard bottoms. The comparison was done on selected taxa (Pisces, Crustacea, Echinoidea, and Asteroidea), which are good candidates for identification from images. Taxonomic identification ranks obtained for the images varied among these taxa (e.g., family/order for fishes, genus for echinoderms). At these ranks, imagery provided a higher taxonomic richness for hard-bottom and complex habitats, partially explained by the poor performance of trawling on these rough substrates. For the same reason, the gamma diversity of Pisces and Crustacea was also higher from images, but no difference was observed for echinoderms. On soft bottoms, physical sampling provided higher alpha and gamma diversity for fishes and crustaceans, but these differences tended to decrease for crustaceans identified to the species/morphospecies level from images. Physical sampling and imagery were selective against some taxa (e.g., according to size or behavior), therefore providing different facets of biodiversity. In addition, specimens collected at a larger scale
Jérôme OLLIER

DNA Barcoding of Scavenging Amphipod Communities at Active and Inactive Hydrothermal Ve... - 0 views

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    Hydrothermal vent areas have drawn increasing interest since they were discovered in 1977. Because of chemoautotrophic bacteria, they possess high abundances of vent endemic species as well as many non-vent species around the fields. During the survey conducted by the Bundesanstalt für Geowissenschaften und Rohstoffe (Federal Institute for Geosciences and Natural Resources, BGR) to identify inactive polymetallic sulfide deposits along Central and Southeast Indian Ridges, the INDEX project studied the scavenging amphipod community at three newly discovered hydrothermal fields. A sample consisting of 463 representatives of Amphipoda (Malacostraca: Crustacea) was collected by means of baited traps in active and inactive vents of three different sites and subsequently studied by both morphological and genetic methods. Molecular methods included the analysis of two mitochondrial (cytochrome c oxidase subunit I [COI] and 16S rRNA) and one nuclear (18S rRNA) genes. By six delimitation methods, 22 molecular operational taxonomic units (MOTUs) belonging to 12 genera and 10 families were defined. The existence of potential species complexes was noted for the representatives of the genus Paralicella. The inactive site, where 19 species were found, showed higher species richness than did the active one, where only 10 taxa were recorded. Seven genera, Ambasiopsis, Cleonardo, Eurythenes, Parandania, Pseudonesimus, Tectovalopsis, and Valettiopsis, were observed only at inactive sites, whereas Haptocallisoma, was collected exclusively at active ones. The species Abyssorchomene distinctus (BIRSTEIN and VINOGRADOV, 1960), Hirondellea brevicaudata Chevreux, 1910, and Hirondellea guyoti (BARNARD and INGRAM, 1990), have been previously reported from vent sites in the Atlantic or Pacific oceans. The present study provides the first report of Eurythenes magellanicus (H. Milne Edwards, 1848) and five other already described species in the Indian Ocean. The addition of 356 sequences strong
Jérôme OLLIER

India's shrimp industry may have lost another 5% of output after monsoon floods - @unde... - 0 views

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    India's shrimp industry may have lost another 5% of output after monsoon floods.
Jérôme OLLIER

The Decline and Recovery of a Crab Population From an Extreme Marine Heatwave and a Cha... - 0 views

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    Driven by a very strong La Niña event and a record strength Leeuwin Current, the 2011 Western Australian marine heatwave (MHW) raised sea surface temperatures (SSTs) along the Western Australian coastline by up to 5°C between November 2010 and March 2011. This single thermal perturbation led to several mortality events and recruitment impairment of commercially important species including Australia's single highest producing blue swimmer crab (Portunus armatus) fishery in Shark Bay. Monthly catch landings dramatically declined from 166 t in April 2011 to 24°C, and detrimental when they exceed 26°C as was the case during the 2011 MHW when SSTs reached 29°C inside Shark Bay. Partial recovery of the crab stock 18 months after the MHW was strongly associated with mean summer temperatures returning below 24°C. Together with a change in management to a quota system, the fishery returned to full recovery status in 2018 with sustainable catch levels of up to 550 t. Long term productivity of this fishery is now at high risk from climate change impacts with shifts in winter water temperatures being cooler by 2°C and occurring earlier by few months inside the Bay. This cooling trend appears to be impacting the spawning period with the timing of peak recruitment also occurring earlier, shifting from February to November. The impacts of the 2011 MHW highlighted the risk to stock sustainability through external drivers such as climate change that was previously poorly understood. The south-west region of Western Australia is considered a climate change hotspot with water temperatures rising at rates above global trends and at inc
Jérôme OLLIER

#India - Coronavirus outbreak disrupts live crab exports - @FISinfo - 0 views

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    Coronavirus outbreak disrupts live crab exports.
Jérôme OLLIER

Changes in Panulirus cygnus Settlement Along Western Australia Using a Long Time Series... - 0 views

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    The pelagic development stages of many marine invertebrate species dictates their spatial and temporal distribution once reaching their benthic second phase of life. This life cycle is associated with the Western Rock Lobster (Panulirus cygnus) along the coast of Western Australia. Over the past 50 years, the number of puerulus reaching the nearshore reefs after their first 9 to 11 months of pelagic life in Western Australia has been monitored. These numbers, collected now at eight sites over the latitudes of the fishery, are indicative of the catchable stock 3-4 years into the future. In 2008, the fishery experienced a recruitment failure which lasted for several years before recovering to mean numbers pre-2008. This was associated with spatial and temporal shifts in the patterns of puerulus settlement. Previous research has hypothesized that physical and biological conditions in the south-east Indian Ocean no longer favored their survival. However, this decline has not been attributed to a single process. As the recovery is ongoing, contrasts in the settlement data before and after the decline are not completed. Here we characterize the data using ANOVA and pairwise comparisons to gain a better understanding of the typical patterns after the decline. Our results demonstrate that there has been a significant reduction in puerulus numbers over the first half of the season at all sites post decline. For the sites south of Lancelin there has been a significant reduction in puerulus numbers over the whole season. In addition, sites that show signs of recovery indicate that the majority of settlement occurred in the second half of the season. We anticipate these results to be the starting point for focused research into the environmental changes which may have occurred to generate these shifts in settlement numbers both from a timing and spatial perspective.
Jérôme OLLIER

The Sundarbans crab farmers battling climate crisis - and pirates - @guardianeco - 0 views

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    The Sundarbans crab farmers battling climate crisis - and pirates.
Jérôme OLLIER

Chasing the Far, Far Away Fish - @hakaimagazine - 0 views

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    Each year, an increasing number of traditional fishers from southwestern Madagascar sail away from their villages, seeking ever-dwindling fish stocks far from home.
Jérôme OLLIER

'Lobsters and octopuses are back': the Kenyan women leading a reef revival - @guardianeco - 0 views

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    'Lobsters and octopuses are back': the Kenyan women leading a reef revival.
Jérôme OLLIER

Plastic pollution kills half a million hermit crabs on remote islands - @guardianeco - 0 views

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    Plastic pollution kills half a million hermit crabs on remote islands.
Jérôme OLLIER

Port Expansion Threatens Vital Indian Lake - @hakaimagazine - 0 views

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    Residents say their lives and livelihoods are at risk from a proposed expansion of India's Kattupalli Port.
Jérôme OLLIER

Pandora's Box in the Deep Sea -Intraspecific Diversity Patterns and Distribution of Two... - 0 views

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    Paralicella tenuipes CHEVREUX, 1908 and Paralicella caperesca SCHULENBERGER and BARNARD, 1976 are known as widely distributed deep-sea scavenging amphipods. Some recent studies based on genetic data indicated the presence of high intraspecific variation of P. caperesca suggesting it is a species complex. Based on published molecular data from the Pacific and Indian oceans and new material obtained from the North and South Atlantic, we integrated the knowledge on the intraspecific variation and species distribution of the two nominal taxa. The study included analysis of three genes (COI, 16S rRNA, 28S rRNA) and revealed the existence of a single Molecular Operational Taxonomic Unit (MOTU) within P. tenuipes and six different MOTUs forming P. caperesca. The distribution pattern of the recognized lineages varied with three (P. tenuipes, MOTU 1 and MOTU 5 of P. caperesca) being widely distributed. There was evidence of contemporary population connectivity expressed by the share of the same COI haplotypes by individuals from very distant localities. At the same time no signal of recent demographic changes was observed within the studied taxa. The time-calibrated phylogeny suggested the emergence of species to be at the time of Mesozoic/Cenozoic transition that may be associated with global changes of the ocean circulation and deep sea water cooling.
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