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Sarah Muncy

ScienceDirect.com - Vaccine - Intranasal and intramuscular immunization with Baculoviru... - 0 views

  • An anti-malarial transmission-blocking vaccine (TBV) that prevents fertilization and/or ookinete/oocyst development within the mosquito is an attractive strategy to limit the transmission of malaria
  • The present study used this system to generate a Plasmodium vivax transmission-blocking immunogen (AcNPV-Dual-Pvs25).
  • Plasmodium vivax
  • ...10 more annotations...
  • A variety of expression vectors (e.g., Escherichia coli, Pichia pastoris and DNA) have been used to express Pvs25 protein which has been administered alone or in combination with adjuvants
  • To date these studies suggest that the recombinant protein currently requires both not only linear, but conformation dependent epitopes, and a strong adjuvant to induce transmission-blocking antibodies.
  • Intranasal and intramuscular immunization with Baculovirus Dual Expression System-based Pvs25 vaccine substantially blocks Plasmodium vivax transmission
  • Recently, we have developed a new vaccine vector system based on the baculovirus Autographa californica nucleopolyhedrosis virus (AcNPV) termed the “Baculovirus Dual Expression System”, which drives expression of vaccine candidate antigens by a dual promoter that consists of tandemly arranged baculovirus-derived polyhedrin and mammalian-derived CMV promoters. It has been shown that AcNPV, an enveloped double-stranded DNA virus that naturally infects insects, possesses strong adjuvant properties that can activate dendritic cell-mediated innate immunity
  • Mucosal vaccines have several attractive features compared with parenteral vaccines (e.g., safety, cost-effectiveness and ease of administration), but studies on their use have been limited almost exclusively to protection against mucosally transmitted pathogens. We provide evidence that i.n. immunization is a feasible alternative for preventing malaria, which is transmitted through non-mucosal routes
  • These results are consistent with our previous work showing that intranasal immunization with the baculovirus-based vaccine induced strong systemic humoral immune responses with high titres of antigen-specific antibodies and conferred complete protection against malaria blood-stage challenge
  • which can induce immunological memory against heterologous antigens in a rodent model; however, it is precluded from clinical use due to its enterotoxicity and potential hazardous effects on olfactory nerves [22]. In contrast, a baculovirus-based delivery system may offer an attractive immunization method, as AcNPV exhibits low cytotoxicity and is incapable of replication in mammalian cells
  • The data described here adds to previously presented data showing the significant potential of the baculovirus dual expression system against the blood stages of the parasite
  • but also demonstrates clearly its ability to induce antibodies against the ookinete surface protein Pvs25, and to elicit a transmission-blocking immune response against the P. vivax isolates from endemic areas, and a transgenic rodent malaria parasite model in preliminary studies.
  • One was SMFA on peripheral blood from P. vivax infected patients.
  •  
    Reference paper #2. Gave me information on malaria and baculoviruses.
kwedul

A Multicomponent Animal Virus Isolated from Mosquitoes: Cell Host & Microbe - 68 views

  • reverse genetics system
    • Casey Finnerty
       
      Please be ready to explain why reverse genetics was a necessary approach for studying this virus.
  • GCXV
    • Casey Finnerty
       
      Here is an example of a stickie note.
  • Viral replication was detected in three mosquito cell lines and in intrathoracically inoculated adult female mosquitoes
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  • Selective degradation with RNase I demonstrates that GCXV has a single-stranded RNA genome.
    • Casey Finnerty
       
      RNaseI is specific for ssRNA.
  • reverse genetics system
  • Multicomponent plant viruses were recognized on the basis of deviations from the expected relationship between infectious dose and the number of lesions on infected leaves (i.e., exhibiting multi-hit rather than single-hit kinetics; Flint et al., 2009xPrinciples of Virology Volume I: Molecular Biology. Flint, S.J., Enquist, L.W., Racaniello, V.R., Skalka, A.M., Barnum, D.R., and de Evaluación, E. See all References, Sánchez-Navarro et al., 2013xEffects of the number of genome segments on primary and systemic infections with a multipartite plant RNA virus. Sánchez-Navarro, J.A., Zwart, M.P., and Elena, S.F. J. Virol. 2013; 87: 10805–10815Crossref | PubMedSee all References).
    • jsackett13
       
      This was explained in the blog article.
  • of any other group of organisms (
    • aceastep
       
      wow
  • no Illumina reads aligned to the segment 5 sequences from the other isolates, and no contigs from ACH27 exhibited significant similarity to the segment 5 sequences from the other isolates. Therefore, segment 5 appears to be absent from ACH27 and TR7094.
  • However, only four segments were assembled for ACH27 and TR7094 (genome size ∼10.6 kb). For these two isolates, the four assembled segments corresponded to the four largest segments assembled in the other isolates (Figure 1Figure 1, segments 1–4).
  • The phylogeny inferred from segment 5 is also inconsistent with those of the other segments. In addition to the absence of this segment in TR7094 and ACH27, this segment exhibited very low levels of nt divergence (0.4%–2.3%), with most sequence variations only present in a single isolate.
  • with each genome segment separately packaged into virions. Although multicomponent genomes are relatively common among RNA viruses that infect plants and fungi, this method of genome organization has not previously been seen in animal viruses (
    • kwedul
       
      Is this the only thing required for a genome to be considered multicomponent?
  • RNA extracted from purified GCXV particles confirmed the presence of a segmented genome (
    • kwedul
       
      So what exactly is it about this purified GCXV that shows it is segmented?
  • The mosquito pools for both ACH27 and TR7094 contained multiple viruses capable of replicating in mosquito cells, so we were unable to obtain pure cultures for these isolates (
    • kwedul
       
      What is it about there being multiple viruses capable of replicating that made them unable to obtain pure cultures for the isolates?
  • Nuclease digestion assays (Figure 1Figure 1B), along with 5′ and 3′ rapid amplification of cDNA ends (RACE), confirmed that all five genome segments were single-stranded, positive-sense RNA (ssRNA+).
    • kwedul
       
      What about these tests confirms all five genome segments were single-stranded positive-sense RNA?
  • all five segments, (2) segments 1–4, and (3) segments 2–5
    • kwedul
       
      Why did they use these three combinations?
  • the number of plaques decreased more quickly than expected with dilution of the inoculant) (
    • kwedul
       
      Why? What is the significance of this?
  • segments 1–5 (passage 1) and segments 1–4 (passage 2)
    • kwedul
       
      What about a second passage, including 1-4, makes it brighter?
Casey Finnerty

Recovery of genetically defined murine norovirus in tissue culture by using a fowlpox v... - 1 views

  • Previous calicivirus reverse-genetics systems have relied on the transfection of either in vitro-transcribed, 5′-capped calicivirus genomic RNA (Chang et al., 2005; Sosnovtsev & Green, 1995) or cDNA constructs, followed by delivery of T7 RNA polymerase using a VACV recombinant (Sosnovtsev et al., 2002; Thumfart & Meyers, 2002). A recent report on rabbit hemorrhagic disease virus (RHDV) has also demonstrated that in vitro-transcribed, uncapped RNA is infectious when transfected into cells or delivered directly to the liver in vivo (Liu et al., 2006). Attempts to recover MNV by using any of these established approaches failed to produce infectious virus (data not shown).
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    This paper contains very good background on the development of the MNV reverse genetics system. The norovirus genome is uncappped, but transfection with uncapped mRNAs does NOT produce many progeny virions.
Sean Hogan

Rabies Virus Hijacks and Accelerates the p75NTR Retrograde Axonal Transport Machinery - 14 views

  • Our data support this finding, as we demonstrated that RABV is transported in acidic compartments (Fig. 6), and mostly in p75NTR-positive endosomes (Fig. 7).
    • nleonard11
       
      Why is RABV transported in acidic compartments? 
  • RABV enters the peripheral nervous system and undergoes long-distance transport arriving at the cell soma and subsequently the CNS [6]. As peripheral neurons are highly polarized cells with long axons, active intracellular transport is vital to the maintenance of neuronal function and survival [7], [8]
    • laceemarie
       
      As RABV is travelling along the axons, does it interfere with the nerve signals that are also travelling there? I know that rabies results in quite a few neurological symptoms, but do these occur when the virus reaches the central nervous system (ultimately the brain) or as soon as RABV enters an axon of the PNS?
  • In neurons, infected cells may mistake RABV particles for cargo and thus recruit trafficking components, allowing viral particles to undergo long-range axonal transport to the neuronal cell body, as was found in the case of adenovirus and the CAR receptor
    • ameliaobert
       
      Most confusing: How would a cell "mistake" a virus particle for cargo and then give it direct access to the nucleus? Does it have specific signals radiating from it or receptors that triggers this trafficking component mishap?
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  • we suggest that RABV hijacks a specific mechanism that enables the neuron to transport cargos over long distances.
    • ameliaobert
       
      To my further question: is this the cellular "mistake" that is happening by the cell that aids in trafficking of this virus? If so interesting that is isn't the cell itself, but the virus taking over a cellular process.
  • Rabies virus (RABV) is a neurotropic virus that depends on long distance axonal transport in order to reach the central nervous system (CNS).
    • alexridesducati
       
      This research shows that RABV doesnt need to be transported via p75NTR, but when it is, it is done with acidic compartments and reaches the target area faster. Also, it was mentioned that the acididty of the compartment induced a conformational change of the virus for membrane fusion. Is there any sort of correlation between speed and compartment acidity, or are there significant structural changes due to acidity that may allow for the virus to reach its destination sooner than if it were p75NTR independent?
  • Measuring both the area and average intensities of the RABV particles in each group, we found that the p75NTR positive RABV particles were larger in size, (average area of 1.34±0.09 µm2 vs. 0.81±0.07 µm2, p<0.0005), and had stronger intensity of GFP signal, when normalized to the average intensity of RABV particles in each experiment (1.24±0.11 vs. 0.61±0.1, p<0.001) (Fig. 8K–L).
    • abachman12
       
      Does this occur naturally within the human body? So does this mean that the rabies virus can be even more dangerous than it already is?
  • ence there are likely to be additional ways for RABV to merge into the p75NTR-RABV endosome
    • rmeloche10
       
      Is there any sort of idea on the other ways that RABV can merge into an endosome, or is this just theoretical?
  • Other membrane-associated components have also been implicated in RABV binding [20]. By binding one of its receptors, RABV could enter the cell and activate downstream signaling which would allow it to hijack and manipulate axonal transport machineries. Although p75NTR is known to be involved in the retrograde transport of neurotrophic factors, little is known regarding its direct contribution to viral transport.
    • Sean Hogan
       
      Is the p75NTR receptor internalized and does it become part of the endosomal membrane during RABV internalization? Could continued signaling from the receptor bound to the endosome membrane be responsible for the manipulation of the axonal transport?
  • Possibly, RABV binding to dynein tethers projecting microtubules (MT) in the cell cortex thereby facilitating its retrograde trafficking from the cell periphery. Following this tethering, RABV particles can merge into the RABV-p75NTR endosomes and travel to the neuron cell body.
    • Sean Hogan
       
      So in the slower transport of RABV without the endosome the interaction between the negative phosphoprotein P and dynein must be sufficient for transport down the microtubules. 
  •  
    Friday 11-7-14, paper
Sarah Muncy

EBSCOhost: What Makes Each Brain Unique - 0 views

    • Sarah Muncy
       
      Can a virus hi-jack this system to get the cell to do reverse transcription?
  • because it, unlike other mobile elements in humans, encodes its own machinery for spreading copies of itself far and wide in the cellular genome.
  • it first transcribes itself into single-stranded RNA, which then travels from the nucleus to the cytoplasm, where it serves as a template for constructing proteins specified by some parts of the L1 DNA
  • ...1 more annotation...
  • Such reverse transcription
Sarah Muncy

A Breakthrough Against Leukemia Using Altered T-Cells - NYTimes.com - 1 views

  • To perform the treatment, doctors remove millions of the patient’s T-cells — a type of white blood cell — and insert new genes that enable the T-cells to kill cancer cells. The technique employs a disabled form of H.I.V. because it is very good at carrying genetic material into T-cells. The new genes program the T-cells to attack B-cells, a normal part of the immune system that turn malignant in leukemia.
  • The T-cells home in on a protein called CD-19 that is found on the surface of most B-cells
  • cytokine-release syndrome, or cytokine storm
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  • Dr. June knew that a drug could lower IL-6
  • tocilizumab
  • the altered T-cells persist in the bloodstream
  • The researchers are not entirely sure why the treatment works, or why it sometimes fails.
  • It is not clear whether a patient’s body needs the altered T-cells forever. The cells do have a drawback: they destroy healthy B-cells as well as cancerous ones, leaving patients vulnerable to certain types of infections, so Emma and the other patients need regular treatments with immune globulins to prevent illness.
    • Sarah Muncy
       
      I was wondering when they'd get to the consequences of killing off the B cells- that's huge.
  •  
    That's so funny- I just saw the update email and Dr. Finnerty also saw this topic (a different article) and posted it, too!)
Sarah Muncy

The HIV Virus: A Possible Cure for Leukemia? | Yahoo! Health - 0 views

  • It's important to note that the T-cells are removed from the patient before being bioengineered with the HIV virus
    • Sarah Muncy
       
      Why is it important to note that the disabled virus isn't injected into the patient? It's function isn't like chemotherapy at all- why even make the comparison?
    • Sarah Muncy
       
      Is there some reason they use T cells only? Are they trying to target T cells, but not dendritic cells or macrophages?
  • therapies that involve the reprogramming of a patient’s immune system, may also eventually be used to fight cancerous breast and prostate tumors.
    • Sarah Muncy
       
      What about lupus, or even allergies for that matter?
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  • Within hours
    • Sarah Muncy
       
      Within hours?!
  •  
    Whoa. If someone is doing HIV- this may be helpful. The virus is being used as a delivery device for genetics to reprogram lymphocytes. They're like biological nanorobots.
Casey Finnerty

Flu shot time? Google Flu Trends predicts worst season on record. - Slate Magazine - 0 views

  • The CDC’s current estimates aren’t all that current.
  • That’s where Google comes in.
  • the numbers can tell us only how many people were suffering from the flu a couple weeks ago.
  • ...2 more annotations...
  • According to a study published in Nature in February 2009, the system can detect outbreaks nearly two weeks before they show up in the official CDC reports.
  • won’t know until the end of the season.”
Sean Hogan

PLOS Pathogens: Different Modes of Retrovirus Restriction by Human APOBEC3A and APOBEC3... - 22 views

  • One such family of restriction factors is the apolipoprotein B editing complex 3 (A3) cellular cytidine deaminases (CDA). While A3 genes are found in all mammals, their number differs from species to species. For example, humans have 7 A3 genes (A3A to A3H) while mice have only one gene. All proteins in this family contain at least one CDA domain that deaminates carbon 4 of cytidine in single-stranded DNA, resulting in a uracil that causes G to A transitions in the opposing strand [3].
    • alexridesducati
       
      Can these genes be exploited for antiviral therapy and if so, can it be done without harm to the host due to mutations?
  • viral cDNA accumulation
  • Packaging of A3G into virions is counteracted by HIV Vif (viral infectivity factor) protein. In virus-producer cells, Vif binds to A3G as well other A3 family members, and recruits cellular E3 ubiquitin ligase complexes, leading to ubiquitination and subsequent proteasomal degradation, thereby preventing packaging of A3G into budding virions [12]–[14]. Lentiviral Vif proteins show strong species-specificity. For example, HIV-1 Vif counteracts human A3G but only certain simian A3G homologues [15], [16]; it also does not interact with mouse A3 [17].
  • ...12 more annotations...
  • Other members of the A3 family are believed to affect other exogenous viruses as well as endogenous retrovirus/retroelement movement within the genome. In particular, human A3A is a potent inhibitor of IAP and MusD and other retrotransposons such as LINE-1 and this inhibition is CDA-independent, at least in cultured cells [18]–[20]. A3A also inhibits adeno-associated virus replication, a nuclear-replicating parvovirus, via CDA-independent means [20]. In monocytes, A3A restricts HIV-1 infection and the decrease in A3A levels that occurs during monocyte-to-macrophage development is concomitant with increased susceptibility to HIV-1 infection [21]. A3A is not packaged into HIV virions and is thought to restrict infection by targeting incoming virus [22]–[24]. In contrast, A3A is packaged in human T-lymphotropic virus type-I virions and restricts infection, at least in transfected cells [25]. A3A preferentially deaminates cytidines that are in a TC motif [26].
  • Different A3 family members block infection by diverse retroviruses from different species, including HIV-2 [27], porcine endogenous retrovirus [28], [29], xenotropic, Friend (F-MLV) and Moloney murine leukemia virus (M-MLV) [30]–[32] and mouse mammary tumor virus (MMTV) [33]. Additionally, A3 proteins may restrict other virus families, including parvoviruses [20], [34], hepatitis B virus [35]–[37], papillomaviruses [38] and herpes simplex virus I [39]. Thus, it has been suggested that A3 proteins exist, at least in part, to prevent zoonotic transmission of viruses [40].
  • Here, we show that transgenic mice expressing the human A3A or A3G proteins restrict murine retrovirus infection in vivo in disparate ways. A3G was packaged into virions in vivo, leading to the deamination of both MLV and MMTV viral genomes. In contrast, A3A was not packaged, and appeared to restrict infection in a largely CDA-independent manner. Finally, we show that Vif/A3G interactions can be studied in this in vivo model, thus providing a potentially useful system for the analysis of small molecule inhibitors of A3 proteins and Vif.
  • To determine the level of transgene expression, we first isolated RNA from different tissues, including peripheral blood mononuclear cells (PBMCs), and performed reverse-transcribed real-time quantitative PCR (RT-qPCR). RNA from human H9 cultured cells and human and C57BL/6 mouse PBMCs served as controls. For each transgene, there was one high- (A3Ghigh, A3Ahigh) and one low- (A3Glow, A3Alow) expressing strain, defined by their relative expression in lymphoid tissues. The A3Ghigh strain expressed higher levels of the transgene than the endogenous mouse gene in spleen and thymus, but similar A3G levels in mouse and human PBMCs, while the A3Glow strain expressed approximately 10-fold lower levels in these tissues (Figure 1A). In contrast, the A3Ahigh strain expressed similar or lower levels than mouse A3; there was also about 2-fold lower expression of A3A in mouse PBMCs than in human PBMCs (Figure 1B). The A3Alow strain had very low but detectable levels of expression in several tissues. Since the β-actin regulatory region was used, transgene expression was seen in many tissues and in several at levels higher than endogenous mouse A3 (e.g. heart, brain and liver) (Figure 1A and 1B). We also performed western blots on different tissues from the 4 different mouse strains, using antiserum that detects both A3A and A3G. The relative protein expression levels were similar to that seen at the RNA level (Figure S1A and S1B).
  • We next determined if the in vivo-produced A3A and A3G proteins were functionally active. Extracts were prepared from primary splenocyte cultures and equal amounts (total protein concentration/volume) were incubated with FAM-labeled substrates containing the A3A- or A3G-preferred target sequence (S50-TTC and S50-CCC, respectively). As controls, we also performed these assays with extracts prepared from 293T cell lines transfected with A3A or A3G. Activity could be readily detected in transgenic mice expressing high levels of A3A or A3G. Further, in accord with the known specificity of the cytidine deaminases, extracts from the A3Ahigh mice deaminated the TTC- more efficiently than CCC-containing substrates, while those from A3Ghigh mice more efficiently deaminated the CCC substrate (Figure 2). For both A3Alow and A3G low, trace amounts of activity were detectable with the preferred substrates, while no activity was detectable with either endogenous mA3 or from mA3 knockout splenocytes. No deaminase activity was detected with WT mouse extracts, perhaps because the mouse protein has lower overall activity or expression. These data show that the transgenic mice expressed catalytically active human deaminases in these heterologous cells.
  • Humans have 7 APOBEC3 genes and determining how each specifically functions to inhibit retroviruses like HIV is complicated, because all 7 can be produced in a given cell type or tissue.
    • laceemarie
       
      What cell/tissue type(s) are these APOBEC3 genes naturally turned on in? 
  • To overcome this limitation, we made transgenic mice that express two of the human proteins, APOBEC3A and APOBEC3G in mice that do not express their own APOBEC3. These mice were able to effectively block infection by several mouse retroviruses
    • laceemarie
       
      What cell type(s) did they use? Does it matter which?
  • We were unable to perform similar assays with in vivo produced MMTV, because the only cell-free virus in mice is found in milk and mammary tumors and we have not yet established breeding colonies of virus-infected human A3 transgenic mice.
    • laceemarie
       
      Was this a screw up, or is it not that important to look at assays with in vivo produced MMTV. And by "not yet," does that mean they are going to? I feel like if your going to use this virus in your experimental studies, you should figure out ways to perform the assays, regardless of how you get the virus. It would appear that they knew this information before hand, so maybe an assay on MMTV is less relevant. 
    • laceemarie
       
      *you're
  • A3G and A3A inhibit retrovirus infection by different means.
    • becky214
       
      Since they use different means of inhibition, do they work together to prevent infection? Or is an and either/or type scenario?
  • Two A3A and A3G mouse strains each were generated, expressing levels of these proteins within the range or at levels lower than that seen in human cells. This likely has relevance to what occurs in individual humans, where non-coding region polymorphisms in A3 genes alter expression levels and may influence progression to HIV-induced disease
    • laceemarie
       
      Could this have something to do with how HIV works in the HIV controllers? Where they still exhibit virus particles, but at a lower amount, don't necessarily spread the virus as much, and don't exhibit as intense of HIV symptoms?
    • ameliaobert
       
      If A3A is less clear, but does not get packaged, where must the A3A involvement with the incoming virus be located (for myeloid cells)? As well as if it is known to use retroelement retotransposition and replication inhibiton in paraoviruses by nh2 to oh independent means, how does the A3A know to be signlle to change the structure of cystine?
  • An additional limitation of previous studies done on human A3 proteins is the reliance on transfecting constructs expressing A3 proteins, which may not reflect the endogenous levels of a protein expression found in vivo
    • Sean Hogan
       
      Couldn't they mimic the in vivo environment by overexpressing necessary proteins in the host?
  •  
    Focus paper for retrovirus presentation.
  •  
    This will be the focus paper for 11/14.
Haram LEE

Oncolytic Virus-Mediated Manipulation of DNA Damage Responses: Synergy With Chemotherap... - 0 views

  •  
    There is a new scientific discovery about the "oncolytic virus" which means attack a tumor. That discovery said that RSV-respiratory syncytial virus- is an oncolytic virus which can attack cancer tumor selectively. But, that paper has not published yet, so i find a paper about the oncolytic virus.
  •  
    http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0002917 is also Oncolytic Virus. Title : Systemic Therapy for Cervical Cancer with Potentially Regulatable Oncolytic Adenoviruses
  •  
    It's really cool to think that we're spending all this time and money on nanotechnology in the medical field, when we already have biological nanotechnology at our fingertips-- if we can learn to use them (viruses) anyway. Perhaps in 100 years a virion will refer to a virus that can heal a cell vs. infect it.
jiyoung yoon

Mysterious Microbe in Water - 0 views

  •  
    this writing is about mimivirus which have the largest virus and large DNA. its origin come from water and it estimated first host is also a marine viability. mimi virus character is suprisingly, can replicate genetic material by themselves! having cellular machinary combined with bacteria, but not absolutly dependent to host system,just need help just step of its metabolism. i think mimivirus middle stage from parastic alive to dependent form has more possibility
Sarah Muncy

ScienceDirect.com - Journal of Bioscience and Bioengineering - Efficient production of ... - 0 views

  •  
    This article about baculoviruses goes into how not only can baculoviruses make simple proteins, or express angitens of forgein substances, they can also make pieces of antibodies!
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