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Contents contributed and discussions participated by apopp10

apopp10

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes - 4 views

  • Numerous bacteria have been selected by humans and used extensively for fermentation and biotechnology processes. Unfortunately, domesticated bacteria used in industrial applications are often susceptible to phage attack, including genera and species widely used as dairy cultures (4).
    • apopp10
       
      Which bacteria are most susceptible to these phage attacks? Those that do not contain these CRISPR sequences? It would be interesting to see the breadth of phages that this "immune response" of bacteria could fight off.
apopp10

The Major Genetic Determinants of HIV-1 Control Affect HLA Class I Peptide Presentation - 11 views

    • apopp10
       
      So it's only the amino acid position that accounts for the SNP and HLA association signals? It does not matter what amino acid you place there? Individual amino acid chemistry will have no affect on it?
apopp10

Inhibitory activity of dioxolane purine analogs on wild-type and lamivudine-r... - 5 views

    • apopp10
       
      Why were these particular nucleoside analogs chosen for the study? Are there other compounds that could have an inhibitory effect on the replication of DHBV and HBV?
apopp10

Norovirus Translation Requires an Interaction between the C Terminus of the Genome-link... - 75 views

shared by apopp10 on 12 Sep 14 - No Cached
  • Noroviruses, a major cause of gastroenteritis in man, have evolved a mechanism that relies on the interaction of translation initiation factors with the virus-encoded VPg protein covalently linked to the 5′ end of the viral RNA.
    • apopp10
       
      I guess this comment never got adhered to my original highlight. Here it is once more. As someone who has gastrointestinal issues including inflammation, i wonder if this virus could have played a role in the cause of my condition, Ulcerative Colitis. I think interrupting this interaction could provide an effective treatment against this virus.
apopp10

Targeting therapeutics to an exposed and conserved binding element of the HIV-1 fusion ... - 10 views

  • and those that can eliminate infected cells, thereby reducing persistent and latent reservoirs of the virus.
    • apopp10
       
      It would be interesting to see if there will be a drug that can eventually do this that will be low-cost and is manageable in dosage. The problem is how much the virus mutates to evade these drugs and the host immune system. Combination therapy with the RT inhibitor, protease inhibitor, the experimental design listed her and this drug may be effective at treating HIV in the future.
apopp10

PLOS Pathogens: Different Modes of Retrovirus Restriction by Human APOBEC3A and APOBEC3... - 22 views

  •  
    Focus paper for retrovirus presentation.
apopp10

Rabies Virus Hijacks and Accelerates the p75NTR Retrograde Axonal Transport Machinery - 2 views

  • In order to illustrate the differences leading to faster transport of RABV compared to NGF, we proceeded to inquire whether internalization of these ligands occurs over similar time frames. To this end, we performed a series of live imaging experiments using TIRF microscopy, and tracked fluorescent RABV or NGF particles at the axonal growth cone. Distinct features of the TIRF evanescent wave allow us to limit our view to the basal surface, an ideal set up for viewing internalization processes occurring at axon tips.
    • apopp10
       
      Why is the basal surface ideal for viewing internalization processes? It also seems that the RABV is faster by just a few seconds according to figure 3. What implications does this have for the virus
apopp10

Virus-Mediated Compartmentalization of the Host Translational Machinery - 22 views

  • FIG 3  Cellular translation initiation factors colocalize to viral factories. (A, B) CV-1 cells were infected with T3D or T1L at an MOI of 1. At 18 h p.i., RPM-labeled cells were coimmunostained for μNS and eIF4E (A) or eIF3A (B). Scale bars, 10 µm. (C) CV-1 cells were infected with T3D, MOI of 3, for the times indicated. Protein levels were assessed by immunoblotting. M = mock.
    • apopp10
       
      I am having trouble interpreting both this figure and figure 4 immediately following it. How do these figures exactly support the claim that transcription initiation, elongation, termination and recycling factors are recruited to viral factories?
apopp10

HSV carrying WT REST establishes latency but reactivates only if the synthesis of REST ... - 3 views

shared by apopp10 on 17 Oct 14 - No Cached
  • In mice and other animal model systems, the virus establishes latency in some neurons but multiplies in others (4). Ultimately, in mice, after an interval of 4 wk, only latent virus can be detected in the peripheral ganglia (5).
    • apopp10
       
      I'm wondering if there is a specific reason as to why the virus chooses to multiple in one neuron versus establish latency in another. Is it just random, or are there different mechanisms in different neurons that allow the virus to perform one act preferentially over another?
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