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slgoogin8981

HSV carrying WT REST establishes latency but reactivates only if the synthesis of REST ... - 7 views

  • R111 recombinant is not reactivation-defective because it is able to reactivate in the presence of inhibitors of protein synthesis in the same manner as the WT parent virus, and (b) because the only significant difference in the WT and R111 viruses is the presence of the REST gene in the latter virus, the data suggest that expression of this gene blocks reactivation and that suppression of protein synthesis, including that of REST, enables reactivation.
    • becky214
       
      I am confused about when REST blocks reactivation and when it enables it. It says the gene blocks reactivation but continues to say it enables it. Does REST only enable reactivation if it plays a role in suppressing protein synthesis?
  • with dexamethasone or dexamethasone and cycloheximide
  • Specifically, a stress response generated by virus entry recruits or activates REST to enable the assembly of the HCLR complex. Stress responses have been postulated to activate REST
    • becky214
       
      I think this is interesting because REST is not usually found in neurons. I'm curious as to how the neuron recruits this gene. Does the virus actually recruit it? Or is it just a cellular response to the stress of viral entry? 
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  • HSV takes advantage of the neuronal stress response to enter into a silent, latent state. To assist in the execution of this plan, HSV evolved a DNA sequence that allows itself to be suppressed in neurons and a mechanism to maintain an equilibrium between total suppression and potential to exit from the latent state.
  • translocated from satellite cells
  • The fundamental question is the identity of the mechanism by which a vigorously replicating virus, on entry into the body, is silenced in neurons harboring latent virus.
    • laceemarie
       
      Just to make sure that I understand this, once the virus enters the body, it quickly replicates and all the new virus particles find a nerve cell to infect and once there, the virus is able to sit in silence, so to speak?
  • Thus, VP16, a virion protein brought into the cells during infection, recruits several cellular proteins, including LSD1, to derepress α gene promoters
    • laceemarie
       
      VP16, a virion protein and a recruiter - this protein sounds pretty important to me. Is there a way or has there been work done with this protein to not allow the derepression at this checkpoint? Is it possible to keep a virus in latency because of alpha gene promoters not getting derepressed so as to not allow the virus to infect the host? I'm not sure if that's a reasonable antiviral therapy or not.
  • In some neurons, the virus establishes a latent, silent state. In other neurons, the virus replicates, and it is most likely that the virus in these neurons is transmitted and replicates in other ganglionic cells.
    • laceemarie
       
      Is this a random event or does this have something to do with the environment of the neuron? I would assume that specific, different environments would be ideal for each.
  • Finally, in contrast to the events following entry of virus after retrograde transport from the periphery, the data suggest that reactivation does not trigger a stress response that leads to activation of REST
    • alexridesducati
       
      Has anyone been able to pinpoint the exact step in infection that activates REST so that it can be studied? If so, perhaps it is possible to manipulate the effects of that step in order to induce an artificial response to the reactivation of HSV1 from its latency period in order to retrigger the stress response that leads to REST activation.
  • Thus, VP16, a virion protein brought into the cells during infection, recruits several cellular proteins, including LSD1, to derepress α gene promoters. One α gene product, infected cell protein 0 (ICP0), derepresses β and γ1 genes. Ultimately, the onset of viral DNA synthesis enables the expression of very late, or γ2, genes (4).
    • Sean Hogan
       
      Is this why the latent infection occurs in the ganglia of the PNS? The necessary proteins for gene derepression can't be recruited in the CNS or other cells?
  • In contrast, simultaneous expression of all viral genes during reactivation from latency is likely to minimize yield, but the mission of the virus is to assemble enough viruses to reach the portal of egress from the body (e.g., mouth, genitals) rather than to overwhelm the host with infectious virus.
    • Sean Hogan
       
      This might be the coolest statement in the whole paper. The discussion above kind of painted a picture of HSV infecting the PNS only but the reason for it's inability to reach the CNS didn't receive as much attention. I think this statement summed it all up though.HSV doesn't care about high virion yields or whether a productive or latent infection is necessary, it just wants to reach the body portals. The virus is "smart," enough to avoid the CNS and keep it's host alive.
  • Between 5 and 24 h after excision, mRNAs representative of all viral gene kinetic groups increase 100-fold in amount. Viral DNA also increases in amount, indicating that viral proteins are made. At the same time, viral LAT and miRNA concentrations decrease at least 10-fold (34). It is convenient to define the initial phase lasting no more than 5 h as the preactivation phase and the remaining time interval as the activation phase.
    • rmeloche10
       
      I'm having trouble grasping why the massive disparity between viral DNA and viral LAT. Obviously there would be some disparity when reactivation occurs, but wouldn't the production of more DNA contribute to even a small amount of LAT production and not a minimal 10 fold decrease?
  • The same concentration of HDAC inhibitor was ineffective in inducing the reactivation of R111 recombinant virus in ganglionic organ cultures maintained in medium containing anti-NGF antibody.
    • ameliaobert
       
      Interesting: That there is an inhibitor for chromatin remodelling (HDAC). Confusing: Is if HDAC can inhibit properly for WT virus, but not for R111 recombinant, that obtains REST. How does REST make the HDAC inhibitor ineffective ia stressed neuron? I understand that REST is what the DNA can be wrapped about and help with latency, so it that why the HDAC cannot inhibit, since REST is already aiding in latency.
    • nleonard11
       
      I thought this process of finding out that the HCLR complex activates from stress was very interesting. Using WT viral genomes appears to be a very effective way to test many virus functions.
    • nleonard11
       
      I was just wondering why the virus goes into a latent after 30 days? What exactly is it waiting to do and what conditions need to be present for it to become active again.
    • slgoogin8981
       
      It would be interesting to know the amount that REST is seen in non-neural cells and nerve cells in the absents of HSV-1. I was state earlier that REST is not normally found in never cells.
sdahlseng10

Production and purification of lentiviral vectors generated in 293T suspens... - 6 views

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    Focus Article; Journal club 1:This is an article that details a novel technique for production of HIV (lentiviral) vectors for use as tools of gene therapy. The fascinating approach that was developed by the authors uses baculovirus as a vector to infect human embryonic kidney cells in culture with the genes necessary to produce a lentiviral vector with therapeutic capabilities.
Casey Finnerty

Ph.D.-7 Phage Display Peptide Library Kit (E8100), Phage Display, NEB - 1 views

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    Nice figure describing a phage display library
sdahlseng10

Cigarette Smoke Modulates Expression of Human Rhinovirus-Induced Airway Epithelial Host... - 0 views

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    This is an interesting article about the gene products that are up-regulated by a rhinovirus infection of respiratory tract epithelial cells, and how that response is limited with the introduction of a cigarette smoke extract. Experiment carried out in human epithelial tissue culture and gene products measured with PCR and immunoblotting.
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    Nice molecular evidence behind the observation that smokers get colds more often, don't you think?
Casey Finnerty

How Influenza (Flu) Vaccines Are Made | Seasonal Influenza (Flu) | CDC - 0 views

  • The most common way that flu vaccines are made is using an egg-based manufacturing process that has been in existence for more than 70 years. Egg-based vaccine manufacturing is used to make both
  • The most common way that flu vaccines are made is using an egg-based manufacturing process that has been in existence for more than 70 years.
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    As a follow-up to yesterday, here is a nice summary on influenza vaccine production.
sdahlseng10

Replication-competent Lentivirus Analysis of Clinical Grade Vector Products - 0 views

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    Supplementary Article to Lesch et al. (2011); journal club 1: This article helps us understand the dangers of attenuated lentiviruses used for gene therapy and other clinical applications. It also details a method for screening newly synthesized lentiviruses for replication competency.
Casey Finnerty

Production of swine flu vaccine is way behind - Yahoo! News - 2 views

  • Also, Protein Sciences Corp. of Meriden, Conn., landed a five-year, $147 million contract to develop a vaccine using its recombinant technology — flu proteins grown in insect cells. The hope is that the first doses would be available within 12 weeks of the beginning of a pandemic. That is about twice as fast as flu vaccine produced from eggs.
Sarah Muncy

ScienceDirect.com - Journal of Bioscience and Bioengineering - Efficient production of ... - 0 views

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    This article about baculoviruses goes into how not only can baculoviruses make simple proteins, or express angitens of forgein substances, they can also make pieces of antibodies!
Sarah Muncy

ScienceDirect.com - Vaccine - Hemagglutinin Displayed Baculovirus Protects Against High... - 0 views

    • Sarah Muncy
       
      So, the baculovirus on TOP of having the H5HA on it, can also get the immune system to kick in better?
  • It is remarkable that low doses (103pfu/mouse) of BVs act as an effective adjuvant [41]. Therefore, reducing BV concentration and elongating vaccination intervals may prevent memory responses to BV administration
  • scanning densitometry
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  • Foreign immunogens or peptides can be displayed on the envelope of AcMNPV by fusion with the baculovirus major envelope protein gp64
  • Baculoviruses have strong adjuvant activity to promote humoral and cellular immune responses against coadministered antigens, activate dendritic cells maturation, induce the production of cytokines, chemokines, and type I IFNs
  • There are two influenza vaccine approaches licensed in the US; the inactivated, split vaccine and the live-attenuated virus vaccine. Inactivated vaccines can efficiently induce humoral immune responses but generally only poor cellular immune responses.
  • Therefore, influenza HA can be displayed on the surface of baculovirus
  • virus-like particle (VLP)
  • Even though cellular immune responses cannot confer sterilizing immunity, they are able to reduce the severity of infection and lower morbidity and mortality rates [47], and antigen-specific memory T cells are able to rapidly respond to a secondary virus infection [45]. Furthermore, cellular immune responses to the conserved epitopes contained in vaccines may provide cross-protective immunity against different subtypes of influenza virus infection
  • To confirm that each HA was incorporated on the envelope of baculoviruses, supernatants from infected Sf9 cells were used to perform hemagglutination assay
  • Most BV display strategies rely on gp64 protein which is the major envelope protein of baculovirus.
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    This paper gave me a better understanding of some aspects of my focal paper that were unclear. How to test for HA, and how baculoviruses may be adjuvants in addition to expression vectors.
Casey Finnerty

The Quest to End the Flu - Carl Zimmer - The Atlantic - 0 views

  • Fauci is more excited about something called a recombinant protein vaccine, which does not rely on growing viruses, even though it is cell-based. At Protein Sciences, a small Connecticut biotech firm, researchers isolate the gene for the flu virus’s surface proteins and insert it into an entirely different species of virus, called a baculovirus. The baculovirus infects insect cells and causes them to make huge amounts of the surface proteins, which the company uses to make Flublok, the only recombinant protein flu vaccine currently available.
  • The researchers have tried various methods, including the same one used to make Flublok—insect cells churning out surface proteins.
  • “The eggs should be long gone,” grumbles Michael Osterholm, the director of the Center for Infectious Disease Research and Policy at the University of Minnesota.
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  • Manufacturers for the most part still make flu vaccines the way they did in World War II: in chicken eggs.
slgoogin8981

Virus-Mediated Compartmentalization of the Host Translational Machinery - 22 views

  • Similarly, the viral single-stranded RNA binding protein σNS localized to the factory margins and had a tubulovesicular staining pattern that extended a short distance from the margins of the factories and colocalized with endoplasmic reticulum (ER) markers.
    • nleonard11
       
      This reovirus has single-stranded RNA rather than double stranded. Research. σNS is a binding protein that has an affinitiy for single-stranded RNA. Why is it used for doulbe-stranded RNA.
  • We further show that the nonstructural protein σNS strongly colocalizes and immunoprecipitates with two proteins in the 43S preinitiation complex (PIC), eIF3A and pS6R, suggesting a role for σNS in the recruitment or maintenance of ribosomes within VF.
    • laceemarie
       
      If σNS is involved in ribosome recruitment and/or maintenance, this seems like a good target for an antiviral therapy. 
  • This model implies that newly synthesized viral proteins must, by some mechanism(s), be trafficked back into the factory to participate in replication and assembly. Data supporting this model are limited.
    • laceemarie
       
      "Limited," but still exists. So under what circumstances did/could this happen? Could it be a possible way to avoid an antiviral drug that inhibits σNS?
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  • Within the VF, viral core particles transcribe and release viral mRNAs that possess a dimethylated cap 1 structure at the 5′ terminus but lack a poly(A) tail (19).
    • alexridesducati
       
      It seems that Reovirus recruits host proteins in order to replicate, and in this sentence we see that the viral mRNAs use a dimethlyated cap vs. the traditional host methylguanosine cap. Does this have any sort of impact on initiation factors associated with the ribosome? The viral mRNA also seems to be lacking in a poly-A tail. Is it because the mRNAs are created in a VF that they dont need to worry about having one?
    • abachman12
       
      I was also thinking the same thing. Does this have any effects on the initiation factors in whole? Does it change anything or do anything different than normal?
  • Consistent with our findings, the authors noted that the rough endoplasmic reticulum (RER) made numerous contacts with VF, which they suggested may indicate a role for RER in the transport of newly synthesized viral proteins to the VF, as is the case for rubella virus (64).
    • joeyevenson
       
      The rough endoplasmic reticulum may be involved in the transport of newly synthesizes viral proteins to the viral factory, could an antiviral that targets the endoplasmic reticulum prevent these newly synthesized proteins from ever getting that far? Does the host do this as a response to the virus? Or is it the virus controlling the cell to transport the viral proteins?
  • To address this, we monitored protein expression levels of eIF4E, eIF4A1, and eIF4G over the course of an infection. As others have found (39), we were unable to detect any difference in the levels of total protein in mock versus infected cells from 0 to 20 h p.i. (Fig. 3C and data not shown). Together, these data suggest that cellular translation proteins are redistributed to the VF.
    • becky214
       
      I am confused as to how the data is showing that these proteins are redistributed to the VF.
  • Most reovirus strains form filamentous VF through an association with stabilized microtubules. However, the T3D strain used in these experiments contains a temperature-sensitive mutation in the viral protein μ2 that prevents this association, resulting in the production of globular VF at 37°C (27, 28). Therefore, to evaluate if PMY labeling occurs within filamentous viral factories, we infected cells with the serotype 1 Lang (T1L) strain. As we found for T3D-infected cells, the PMY labeling localized to T1L VF at 18 h postinfection
    • rmeloche10
       
      Is this temperature sensitive mutation put in place by the authors? Or is the mutation a natural feature of the virus, if it is would there be any reason for inhibiting the micro tubule stabalization? 
  • It was unclear if this was a result of increased expression levels or as a consequence of redistribution of the proteins to the factories. To address this, we monitored protein expression levels of eIF4E, eIF4A1, and eIF4G over the course of an infection. As others have found (39), we were unable to detect any difference in the levels of total protein in mock versus infected cells from 0 to 20 h p.i. (Fig. 3C and data not shown). Together, these data suggest that cellular translation proteins are redistributed to the VF.
    • Sean Hogan
       
      I had a little trouble wrapping my brain around this part. If the IF proteins are expressed at similar levels then what is the cause of the redistribution? Does it have to do with the sigma NS interaction and then eventually the preinitiation complex is recruited?
  • Our finding that σNS interacts with eIF3A and pS6R suggests that translational machinery is recruited to the factory by viral proteins. This is consistent with the finding of others that σNS cosediments with 40S and 60S ribosomes (62) and suggests that σNS is directly involved in viral translation.
    • Sean Hogan
       
      I feel like a  loss of function experiment (sigma NS) would provide an answer for this.  
  • FIG 3  Cellular translation initiation factors colocalize to viral factories. (A, B) CV-1 cells were infected with T3D or T1L at an MOI of 1. At 18 h p.i., RPM-labeled cells were coimmunostained for μNS and eIF4E (A) or eIF3A (B). Scale bars, 10 µm. (C) CV-1 cells were infected with T3D, MOI of 3, for the times indicated. Protein levels were assessed by immunoblotting. M = mock.
    • apopp10
       
      I am having trouble interpreting both this figure and figure 4 immediately following it. How do these figures exactly support the claim that transcription initiation, elongation, termination and recycling factors are recruited to viral factories?
    • slgoogin8981
       
      Does the viral factor protect the dsRNA from RIG-1? Earlier the paper spoke of energy balances, does the viral factor require a lot of energy to be created?
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    Focus paper for friday
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