Group items tagged

de Villena and his colleagues counted the RNA molecules produced and found that genes from the father produced on average more RNA than genes from the mother. (And remember, RNA directs the production of proteins, which are the workhorses of the body's development and function.) The implication? "It's not only what you inherit, but from whom you inherit," he said.

In molecular biology, ligation refers to the joining of two DNA fragments through the formation of a phosphodiester bond. An enzyme known as a ligase catalyzes the ligation reaction. In the cell, ligases repair single and double strand breaks that occur during DNA replication. In the laboratory, DNA ligase is used during molecular cloning to join DNA fragments of inserts with vectors - carrier DNA molecules that will replicate target fragments in host organisms.

3:30 min video emphasizing key molecules

Vibrio harveyi is a marine bacteria that emits light only at high population density. The bacterial bioluminescence is controlled by a system called quorum sensing. In this system, signaling molecules are secreted, and when they bind to cell surface receptors, they turn on many genes, including those that produce bioluminescence.

3:35 video To some they look like bow-legged cowboys. To others, swaggering pirates. Either way, the two-legged molecules known as motor proteins are what get the job of living done in most of your cells.

9 min video We have no ways to directly observe molecules and what they do -- Drew Berry wants to change that. At TEDxSydney he shows his scientifically accurate (and entertaining!) animations that help researchers see unseeable processes within our own cells.

Nature's best kept secret is a wonder molecule called RNA. It is central to the origin of life, evolution, and the cellular machinery that keeps us alive. In this Lab you'll play the role of a molecular engineer by solving RNA folding puzzles. Then take your skills to Eterna, where you can design RNAs that could be at the heart of future life-saving therapies.

3:30 high quality animation of epigenetic processes and molecules

In biology classes, students are typically taught that spontaneous generation does not take place. And yet, at the origin of life, life had to arise without parents from abiotic processes. What were those processes that gave rise to the first life?  This case study uses an interrupted format to guide students through the Miller-Urey experiment of 1953, which showed that organic molecules could be produced from abiotic precursors and conditions thought to be prevalent on the early Earth. The case also addresses the more speculative implications about where these reactions may have taken place to create the organic building blocks of life on this planet. The first three parts of the case, which explore the Miller-Urey experiment, are ideal for introductory biology courses and take about 45-50 minutes to complete. The remaining sections, which explore whether such chemical reactions took place in outer space, were used in a non-major astrobiology course and require a further hour to complete.

A keenly observant young man named Tony Allison, working in East Africa in the 1950s, first noticed the connection and assembled the pieces of the puzzle. His story stands as the first and one of the best understood examples of natural selection, where the selective agent, adaptive mutation, and molecule involved are known-and this is in humans to boot. The protection against malaria by the sickle-cell mutation shows how evolution does not necessarily result in the best solution imaginable but proceeds by whatever means are available.

The goal of RI-ITEST is to prepare diverse students for careers in information technologies by engaging them in exciting, inquiry- based learning activities that use sophisticated computational models in support of a revolutionary science curriculum. Teachers will incorporate interactive computer models developed under the Science of Atoms and Molecules (SAM) project at the Concord Consortium. These materials were specifically designed to support a deeper understanding of science made possible through interactive computer simulations and the new physics-chemistry-biology sequence. Connections will be made between the models students use to learn science and possible careers in research and industry where computer modeling is used.

As the genomes of more and more species are sequenced, geneticists are piecing together an extraordinarily detailed picture of the molecules that are fundamental to life on Earth. With modern techniques, we can not only trace how the bodies of animals have evolved, we can even identify the genetic mutations behind these changes and, as we recently reported, genes sometimes evolve in surprising ways. Here though, in celebration of the versatility of DNA, New Scientist presents five classic examples of gene evolution.

Why are millions of people allergic to peanuts or pollen, but hardly anyone seems to have a reaction to rice or raisins? Because only some of these things carry molecules similar to those found in parasites that send our immune systems into hyperdrive, according to a new study. The advance could help researchers predict what other foods might cause allergies.

As the narrative goes, fat is bad. Well, it's actually more nuanced than that. The type of fat you eat is more impactful on your health than the quantity. George Zaidan examines triglycerides, the varied molecules that make up fat, and how to identify which types of fat you are consuming.

Was the "Brooklyn Butcher" of 1926 a cold-blooded killer or was something less sinister at play? This interrupted case study introduces students to hemoglobin binding and carbon monoxide poisoning by working through the details of a fictionalized account of a true-crime story. Topics covered include molecule conformational states, binding affinity, deoxyhemoglobin, oxyhemoglobin, carboxyhemoglobin, and oxygen transport. Students also design an experiment to determine the cause of death of the victim. Prior to beginning the activity students should have some knowledge of the respiratory and circulatory systems and be familiar with oxygen binding curves. Detailed understanding of hemoglobin conformational changes is not necessary since this information is covered in the case. Students will also learn briefly about the electromagnetic spectrum and visible light. Originally developed for a non-majors, pre-nursing anatomy and physiology course, the case is also appropriate for use in any of the following courses: introductory biochemistry, introductory biology, introductory chemistry, nursing, exercise physiology, or possibly even introductory physics.

She wanted to understand the effects of mutations that the gene for p53 is prone to. In dozens of simulations, she and her colleagues tracked how common p53 mutations further destabilize the already floppy protein, distorting it and preventing it from binding to DNA. Some simulations also revealed something else: a fingerhold for a potential drug. Once in a while, a small cleft forms in the mutated protein's core. When Amaro added virtual drug molecules into her models, the compounds lodged in that cleft, stabilizing p53 just enough to allow it to resume its normal functions.

Explore electrophoresis with The Amoeba Sisters! This biotechnology video introduces gel electrophoresis and how it functions to separate molecules by size. Restriction enzymes, DNA ladders, and DNA fingerprinting briefly introduced.

How can a mixture of molecules, too small to be seen with even a high-powered microscope, be separated from one another? Such was the dilemma facing scientists until the development of a process that is now standard in laboratories worldwide-gel electrophoresis. Laboratories rely heavily on this proven and reliable technique for separating a wide variety of samples, from DNA used in forensics and for mapping genes, to proteins useful in determining evolutionary relationships.

Gangnam stype take on biomolecules

NIH publication