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Jérôme OLLIER

When Imagery and Physical Sampling Work Together: Toward an Integrative Methodology of ... - 0 views

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    Imagery has become a key tool for assessing deep-sea megafaunal biodiversity, historically based on physical sampling using fishing gears. Image datasets provide quantitative and repeatable estimates, small-scale spatial patterns and habitat descriptions. However, taxon identification from images is challenging and often relies on morphotypes without considering a taxonomic framework. Taxon identification is particularly challenging in regions where the fauna is poorly known and/or highly diverse. Furthermore, the efficiency of imagery and physical sampling may vary among habitat types. Here, we compared biodiversity metrics (alpha and gamma diversity, composition) based on physical sampling (dredging and trawling) and towed-camera still images (1) along the upper continental slope of Papua New Guinea (sedimented slope with wood-falls, a canyon and cold seeps), and (2) on the outer slopes of the volcanic islands of Mayotte, dominated by hard bottoms. The comparison was done on selected taxa (Pisces, Crustacea, Echinoidea, and Asteroidea), which are good candidates for identification from images. Taxonomic identification ranks obtained for the images varied among these taxa (e.g., family/order for fishes, genus for echinoderms). At these ranks, imagery provided a higher taxonomic richness for hard-bottom and complex habitats, partially explained by the poor performance of trawling on these rough substrates. For the same reason, the gamma diversity of Pisces and Crustacea was also higher from images, but no difference was observed for echinoderms. On soft bottoms, physical sampling provided higher alpha and gamma diversity for fishes and crustaceans, but these differences tended to decrease for crustaceans identified to the species/morphospecies level from images. Physical sampling and imagery were selective against some taxa (e.g., according to size or behavior), therefore providing different facets of biodiversity. In addition, specimens collected at a larger scale
Jérôme OLLIER

Via @SchmidtOcean - Modern dynamics, morphology and habitats of slope-confined canyons ... - 0 views

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    Repeat multibeam mapping of two slope-confined canyons on the northwest Australian margin provides new understanding of the processes that are active in shaping these environments. The Cape Range and Cloates canyons initiate on the mid to lower continental slope but are now known to be connected to the shelf via small channels and gullies. Both canyons have areas of steep walls, with evidence of slides, and large depressions on the canyon floors. These canyons were first mapped systematically with multibeam sonar in 2008 and were remapped in 2020 during a biodiversity survey that also collected high-resolution imagery and biological samples. Comparison of seabed features between these two time periods indicates active sliding, minor headwall retreat and continued excavation of deep depressions on the canyon floor. Significantly, intact blades of displaced seagrass imaged at various depths up to 4200 m throughout both canyons indicates that material sourced from the adjacent continental shelf is being transported through these canyon systems. Turbidity currents are actively modifying canyon walls and floor depressions, while also providing a sediment source that has resulted in minor accretion on the canyon floor. Sedimentation likely regulates benthic communities in these canyons, with imagery showing highest densities of sessile invertebrates in habitats protected from sedimentation (e.g. rock overhangs, cliff edges). Since steep canyon habitats are rare within these canyons, and support high benthic abundance, they likely represent biologically significant areas of the Gascoyne Marine Park. Repeat mapping provides an understanding of the dynamics of these canyons and a context for assessing and monitoring the stability of the seabed habitats within this marine reserve.
Jérôme OLLIER

New study shows parrotfish are critical to coral reef island building - @UniofExeter - 0 views

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    As well as being a beautiful species capable of changing its colour, shape and even gender, new research published today shows that parrotfish, commonly found on healthy coral reefs, can also play a pivotal role in providing the sands necessary to build and maintain coral reef islands.
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    As well as being a beautiful species capable of changing its colour, shape and even gender, new research published today shows that parrotfish, commonly found on healthy coral reefs, can also play a pivotal role in providing the sands necessary to build and maintain coral reef islands.
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    As well as being a beautiful species capable of changing its colour, shape and even gender, new research published today shows that parrotfish, commonly found on healthy coral reefs, can also play a pivotal role in providing the sands necessary to build and maintain coral reef islands.
Jérôme OLLIER

Thriving reef fisheries continue to provide food despite coral bleaching - @LancasterUni - 0 views

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    Reef fisheries can continue to provide food and income despite corals being lost to climate change, according to new research conducted in the Seychelles.
Jérôme OLLIER

Via @IAMSPOnline - India - Union Cabinet approves law providing death penalty for marit... - 0 views

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    Union Cabinet approves law providing death penalty for maritime piracy.
Jérôme OLLIER

A Sustained Ocean Observing System in the Indian Ocean for Climate Related Scientific K... - 0 views

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    The Indian Ocean is warming faster than any of the global oceans and its climate is uniquely driven by the presence of a landmass at low latitudes, which causes monsoonal winds and reversing currents. The food, water, and energy security in the Indian Ocean rim countries and islands are intrinsically tied to its climate, with marine environmental goods and services, as well as trade within the basin, underpinning their economies. Hence, there are a range of societal needs for Indian Ocean observation arising from the influence of regional phenomena and climate change on, for instance, marine ecosystems, monsoon rains, and sea-level. The Indian Ocean Observing System (IndOOS), is a sustained observing system that monitors basin-scale ocean-atmosphere conditions, while providing flexibility in terms of emerging technologies and scientificand societal needs, and a framework for more regional and coastal monitoring. This paper reviews the societal and scientific motivations, current status, and future directions of IndOOS, while also discussing the need for enhanced coastal, shelf, and regional observations. The challenges of sustainability and implementation are also addressed, including capacity building, best practices, and integration of resources. The utility of IndOOS ultimately depends on the identification of, and engagement with, end-users and decision-makers and on the practical accessibility and transparency of data for a range of products and for decision-making processes. Therefore we highlight current progress, issues and challenges related to end user engagement with IndOOS, as well as the needs of the data assimilation and modeling communities. Knowledge of the status of the Indian Ocean climate and ecosystems and predictability of its future, depends on a wide range of socio-economic and environmental data, a significant part of which is provided by IndOOS.
Jérôme OLLIER

Hydrodynamic Drivers and Morphological Responses on Small Coral Islands-The Thoondu Spi... - 0 views

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    Assessing the resilience of islands toward altered ocean climate pressures and providing robust adaptation measures requires an understanding of the interaction between morphological processes and the underlying hydrodynamic drivers. In this sense, this study presents changing sediment volumes on various temporal scales for the fringing reef island Fuvahmulah. Based on three field campaigns, conducted over 2 years, aerial imagery provides information on marine aggregates of the island's beaches. In addition, high resolution climate reanalysis data serves as input into an empirical and a numerical approach. Together, both approaches describe the driving processes behind volumetric seasonal and interannual changes: On the one hand, the empirical method quantifies sediment transport rates for calcareous sediments over the whole time span of the data set by considering wind and swell waves from multiple directions. On the other hand, the numerical method gives insights into the complexity of currents induced by dominant wave components. Combining these methods facilitates hindcasting and predicting morphological changes under varying wave climate, assessing sediment pathways over the whole reef, and describing the seasonal and interannual evolution of the sand spit Thoondu. As a result, this study reveals sediment distribution on different spatio-temporal scales and elucidates their significance in the design of conventional and alternative low-regret coastal adaptation.
Jérôme OLLIER

Soluble Iodine Speciation in Marine Aerosols Across the Indian and Pacific Ocean Basins... - 0 views

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    Iodine affects the radiative budget and the oxidative capacity of the atmosphere and is consequently involved in important climate feedbacks. A fraction of the iodine emitted by oceans ends up in aerosols, where complex halogen chemistry regulates the recycling of iodine to the gas-phase where it effectively destroys ozone. The iodine speciation and major ion composition of aerosol samples collected during four cruises in the East and West Pacific and Indian Oceans was studied to understand the influences on iodine's gas-aerosol phase recycling. A significant inverse relationship exists between iodide (I-) and iodate (IO3-) proportions in both fine and coarse mode aerosols, with a relatively constant soluble organic iodine (SOI) fraction of 19.8% (median) for fine and coarse mode samples of all cruises combined. Consistent with previous work on the Atlantic Ocean, this work further provides observational support that IO3- reduction is attributed to aerosol acidity, which is associated to smaller aerosol particles and air masses that have been influenced by anthropogenic emissions. Significant correlations are found between SOI and I-, which supports hypotheses that SOI may be a source for I-. This data contributes to a growing observational dataset on aerosol iodine speciation and provides evidence for relatively constant proportions of iodine species in unpolluted marine aerosols. Future development in our understanding of iodine speciation depends on aerosol pH measurements and unravelling the complex composition of SOI in aerosols.
Jérôme OLLIER

Via @aims_gov_au - Predation of baitfishes associated with whale sharks at Ningaloo Ree... - 0 views

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    Baitfishes may aggregate around megafauna such as whale sharks (Rhincodon typus) to gain protection from larger predatory fishes. Here, we used videos from deployments of animal-borne cameras on whale sharks and provided by tourism operators at Ningaloo Reef in Western Australia to document large schools of trevally (Carangidae spp.) consuming entire schools of baitfishes (Carangidae spp.) swimming with whale sharks within 2-45 s. These videos showed that small baitfishes are still very vulnerable to predatory fishes when accompanying whale sharks, refuting the hypothesis that whale sharks provide baitfishes shelter from predators. It thus seems more likely that the association between whale sharks and baitfishes may confer other advantages such as reduced costs of locomotion and/or enhanced feeding opportunities for baitfishes rather than protection from predation.
Jérôme OLLIER

Benthic species patterns in and around the Cape Canyon: A large submarine canyon off th... - 0 views

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    Although submarine canyons are internationally recognized as sensitive ecosystems and reported to be biological hotspots, regional studies are required to validate this consensus. To this end, hydrographic and benthic biodiversity data were collected during three cruises (2016-2017) to provide insights on the benthic patterns within South African canyon and non-canyon offshore areas. A total of 25 stations, sampled at 200-1000 m depth range, form the basis of the multivariate analysis. Diversity gradients were calculated and then differences were compared across substrate types and depth zones represented within 12 canyon and 13 non-canyon stations. Significant differences in both substrate and depth were evident, despite measures being highly variable. This observation of varying diversity in different substrates is in line with previous studies. No clear pattern was observed for species diversity (delta+). However, non-canyon stations overall showed a higher diversity in comparison to canyon stations. A notable peak in diversity is observed in canyon areas in the 401-500 m depth zone. Species richness followed an opposing pattern, as it decreased with depth and was consistently higher in canyon areas. These results align with the well-defined influence of depth-related variables on the distribution of taxonomic groups and the substrate available, at various scales. The eutrophic characteristic of the Benguela region may have attributed to the insignificant diversity differences between canyon and non-canyon stations. To assess the benthic species structure in canyon and non-canyon areas, we converted the 108 benthic species into a gamma+ matrix. We then modelled the biological response to predictor variables (substrate and depth). Although the canyon and non-canyon areas have an overlapping species composition, the main effects (canyon vs. non-canyon, depth, and substrate) showed significant differences. Thirteen species were characteristic of canyon areas, whilst
Jérôme OLLIER

Coupled hydrodynamic and water quality modeling in the coastal waters off Chennai, East... - 0 views

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    Coastal waters are inherently dynamic due to river discharge, industrial effluents, shipping, dredging, waste dumping, and sewage disposal. Population growth in urban cities, climate change and variability, and changes in land-use practices all contribute to pressure on coastal water quality (SKOVSKI et al., 2012; MILLER and HUTCHINS, 2017; KUMAR et al., 2020; Vijay PRAKASH et al., 2021). Anthropogenic activity is evident around these estuaries and coastal and open ocean environments. Hence, it is important to assess the water quality on a regular basis and provide mitigation measures for coastal pollution (YUVARAJ et al., 2018). Improving water quality and variability in coastal waters is necessary and should be prioritized. Observational programs, which are more expensive and time-consuming, aid in understanding the status of water quality and its trends. Many countries have coastal programs that use predictive systems to inform the public and stakeholders about coastal health. Hydrodynamic processes are an integral part of complex surface water systems. The main factor that determines the concentration of pollutants is hydrodynamic transport, which includes advection, dispersion, vertical mixing, and convection (James, 2002). The flow and circulation patterns have a great influence not only on the distribution of temperature, nutrients, and dissolved oxygen (DO) but also on the aggregation and distribution of sediments and pollutants. When a load of pollutants is discharged into coastal waters, it is affected by the fate and transportation processes that change its concentration. Several studies have been conducted to evaluate the coastal water quality spatiotemporally along the east coast of Indian coastal waters using site-specific data and model configuration (PANDA et al., 2006; BHARAHTI et al., 2017; NAIK et al., 2020; MOHANTY et al., 2021). Through numerical modeling and remote sensing, estimation is user-friendly and low-cost in evaluating any water quali
Jérôme OLLIER

Via @WhySharksMatter - Distinct coral reef habitat communities characterized by environ... - 0 views

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    Coral reefs are biodiversity hotspots, places of high endemicity and provide essential services to billions of people globally. With increasing threats to these reefs worldwide, there is a need to implement faster, more efficient ways to monitor spatial and temporal patterns of biodiversity. Environmental DNA (eDNA) metabarcoding offers a promising tool to address this issue, as it has revolutionized our ability to monitor biodiversity from complex environmental samples such as seawater. However, the capacity for eDNA to resolve fine scale shifts in community composition across habitats in seascapes is yet to be fully explored. Here, we applied eDNA metabarcoding using the rRNA 18S Universal eukaryote assay to explore differences in community profiles between samples collected from the lagoon and reef slope habitats across more than 170 km of the Ningaloo Coast World Heritage Area in Western Australia. We recovered 2061 amplicon sequence variants that comprised of 401 taxa spanning 14 different metazoan phyla such as cnidarians, poriferans, molluscs, algae, worms, and echinoderms. Our results revealed strong clustering of samples by habitat type across the length of the reef. Community dissimilarity (beta diversity) between samples collected from the reef slope and lagoon habitats was high and was driven largely by a strong rate of spatial turnover, indicating a distinct set of taxa representing each reef zone community. We also detected a strong pattern of isolation by distance within our slope samples, suggesting that communities are spatially stratified across the length of the reef. Despite high connectivity due to regular flushing of the lagoon environment, our results demonstrate that metabarcoding of seawater eDNA from different habitats can resolve fine scale community structure. By generating multi-trophic biodiversity data, our study also provided baseline data for Ningaloo from which future changes can be assessed.
Jérôme OLLIER

Social-ecological vulnerability to climate change and risk governance in coastal fishin... - 0 views

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    In Bangladesh, fishing communities are one of the most climate-vulnerable groups, though they play an important role in economic development. The main objective of this study was to identify vulnerability by exploring exposure (i.e., lack of regulating services or household capitals), susceptibility (i.e., lack of access to provisioning services), and lack of resilience (i.e., lack of alternative livelihoods and capacity) and to explore adaptation options, and challenges to understand risk governance. The study considered 45 published research articles for analysis following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Keywords were used in combinations (e.g., fishing communities and Bangladesh) to identify and screen published articles. Articles published in English focusing on vulnerability and/or risk governance, published between 2011 and 2022, featuring original empirical data or a comprehensive systematic review, and published in peer-reviewed journals were included. Articles were excluded if vulnerability and risk governance were evaluated but did not fit or match the definition used in this study. The study found frequent disasters and ocean warming caused different stresses, such as reduced fish catch and income, and resulted in an increased risk of fisheries conflict. Moreover, fishing communities have limited access to properties, modern fishing equipment, financial institutions, and fisher-centered organizations. Adaptation strategies include ecosystem-based (e.g., plantation, payment for ecosystem services) and non-ecosystem-based (e.g., temporary migration, getting help from neighbors) approaches. To boost fish production, the Government of Bangladesh instituted fishing restrictions and social safety net programs (e.g., distributing rice during the fishing restrictions); both initiatives were helpful. However, the conservation policies are not being implemented properly, and there is no particular social welfa
Jérôme OLLIER

Via @WhySharksMatter - Baited video, but not diver video, detects a greater contrast in... - 0 views

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    Inherent differences between baited remote video versus diver-operated video survey methodologies may influence their ability to detect effects of fishing. Here, the ability of no-take zones (NTZs) to provide protection for legal-sized fish from targeted species within the Ningaloo Marine Park (NMP) was assessed using both baited remote underwater stereo-video (stereo-BRUV) and diver-operated stereo-video (stereo-DOV). The relative abundance of legal-sized individuals of three recreationally targeted fish species, spangled emperor Lethrinus nebulosus, chinaman cod Epinephelus rivulatus and goldspotted trevally Carangoides fulvoguttatus, were examined using both methodologies inside and outside six NTZs across the NMP. Stereo-BRUVs found positive effects of protection on the relative abundance of legal-size C. fulvoguttatus and L. nebulosus in NTZs. Stereo-DOVs, however, did not detect any differences in relative abundances and sizes of these species between areas opened and closed to fishing. These contrasting results suggest that choice of sampling methodology can influence interpretations of the ability of NTZs to provide adequate levels of protection for target species. Our results suggest that stereo-BRUVs are a superior technique to stereo-DOVs for assessing the effectiveness of no-take zones for protection of fishery target species, reflecting bait attraction and an absence of diver influence on fish behaviour.
Jérôme OLLIER

DNA Barcoding of Scavenging Amphipod Communities at Active and Inactive Hydrothermal Ve... - 0 views

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    Hydrothermal vent areas have drawn increasing interest since they were discovered in 1977. Because of chemoautotrophic bacteria, they possess high abundances of vent endemic species as well as many non-vent species around the fields. During the survey conducted by the Bundesanstalt für Geowissenschaften und Rohstoffe (Federal Institute for Geosciences and Natural Resources, BGR) to identify inactive polymetallic sulfide deposits along Central and Southeast Indian Ridges, the INDEX project studied the scavenging amphipod community at three newly discovered hydrothermal fields. A sample consisting of 463 representatives of Amphipoda (Malacostraca: Crustacea) was collected by means of baited traps in active and inactive vents of three different sites and subsequently studied by both morphological and genetic methods. Molecular methods included the analysis of two mitochondrial (cytochrome c oxidase subunit I [COI] and 16S rRNA) and one nuclear (18S rRNA) genes. By six delimitation methods, 22 molecular operational taxonomic units (MOTUs) belonging to 12 genera and 10 families were defined. The existence of potential species complexes was noted for the representatives of the genus Paralicella. The inactive site, where 19 species were found, showed higher species richness than did the active one, where only 10 taxa were recorded. Seven genera, Ambasiopsis, Cleonardo, Eurythenes, Parandania, Pseudonesimus, Tectovalopsis, and Valettiopsis, were observed only at inactive sites, whereas Haptocallisoma, was collected exclusively at active ones. The species Abyssorchomene distinctus (BIRSTEIN and VINOGRADOV, 1960), Hirondellea brevicaudata Chevreux, 1910, and Hirondellea guyoti (BARNARD and INGRAM, 1990), have been previously reported from vent sites in the Atlantic or Pacific oceans. The present study provides the first report of Eurythenes magellanicus (H. Milne Edwards, 1848) and five other already described species in the Indian Ocean. The addition of 356 sequences strong
Jérôme OLLIER

Seasonal Distribution of the Fin Whale (Balaenoptera physalus) in Antarctic and Austral... - 0 views

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    The fin whale is listed as globally vulnerable, with ongoing threats to their population, yet little is known about the distribution and movements of the Southern Hemisphere sub-species, Balaenoptera physalus quoyi. This study assesses fin whale distribution in the Southern Hemisphere analysing acoustic recordings from 15 locations in Antarctic and Australian waters from 2002 to 2019. A seasonal acoustic presence of fin whales in Antarctic waters from late austral summer to autumn (February to June) with long-term, consistent annual usage areas was identified at the Southern Kerguelen Plateau and Dumont d'Urville sites. In comparison, limited vocal presence of fin whales was observed at the Casey site. In Australian waters, fin whales were seasonally present from austral autumn to mid-spring (May to October) on east and west coasts, with a decadal pattern of acoustic presence observed at Cape Leeuwin, WA. Two migratory pathways are identified, from the Indian sector of Antarctica to the west coast of Australia and from the Pacific sector of Antarctica to the east coast of Australia. The identified seasonal distributions and migratory pathways provide valuable information to aid in monitoring the recovery of this vulnerable sub-species. We suggest the identified distribution and dispersal from the Southern Kerguelen Plateau and Dumont d'Urville sites to the west and east coasts of Australia respectively, as well as the spatial separation between Antarctic sites, provide preliminary evidence of separate sub-populations of the Southern Hemisphere sub-species of fin whale.
Jérôme OLLIER

Via @Biomarine_fr @squamiferum - Endosymbiont population genomics sheds light on transm... - 0 views

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    The scaly-foot snail (Chrysomallon squamiferum) inhabiting deep-sea hydrothermal vents in the Indian Ocean relies on its sulphur-oxidising gammaproteobacterial endosymbionts for nutrition and energy. In this study, we investigate the specificity, transmission mode, and stability of multiple scaly-foot snail populations dwelling in five vent fields with considerably disparate geological, physical and chemical environmental conditions. Results of population genomics analyses reveal an incongruent phylogeny between the endosymbiont and mitochondrial genomes of the scaly-foot snails in the five vent fields sampled, indicating that the hosts obtain endosymbionts via horizontal transmission in each generation. However, the genetic homogeneity of many symbiont populations implies that vertical transmission cannot be ruled out either. Fluorescence in situ hybridisation of ovarian tissue yields symbiont signals around the oocytes, suggesting that vertical transmission co-occurs with horizontal transmission. Results of in situ environmental measurements and gene expression analyses from in situ fixed samples show that the snail host buffers the differences in environmental conditions to provide the endosymbionts with a stable intracellular micro-environment, where the symbionts serve key metabolic functions and benefit from the host's cushion. The mixed transmission mode, symbiont specificity at the species level, and stable intracellular environment provided by the host support the evolutionary, ecological, and physiological success of scaly-foot snail holobionts in different vents with unique environmental parameters.
Jérôme OLLIER

Australian Navy ship provides emergency assistance to French Fishing Vessel | Navy Daily - 0 views

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    Australian Navy ship provides emergency assistance to French Fishing Vessel.
Jérôme OLLIER

Via @savingoceans @DianeN56 - Laser 'Ruler' Measures Whale Sharks - @DNews - 0 views

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    A technique that combines lasers and photography provides a decent measurement of the largest fish in the world.
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    A technique that combines lasers and photography provides a decent measurement of the largest fish in the world.
Jérôme OLLIER

Barnacles help track MH370 debris - @NOCnews - 0 views

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    The type and size of barnacles on the Malaysian Airways MH370 flight debris could provide clues to the path it took through the Indian Ocean, according to researchers at the National Oceanography Centre (NOC).
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    The type and size of barnacles on the Malaysian Airways MH370 flight debris could provide clues to the path it took through the Indian Ocean, according to researchers at the National Oceanography Centre (NOC).
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