Group items tagged

The OBO Foundry is a collaborative experiment involving developers of science-based ontologies who are establishing a set of principles for ontology development with the goal of creating a suite of orthogonal interoperable reference ontologies in the biomedical domain. The groups developing ontologies who have expressed an interest in this goal are listed below, followed by other relevant efforts in this domain.

Social architecture is the conscious design of an environment that encourages certain social behavior leading towards some goal or set of goals

Insightful discussion around the coining of the term "Social Architecture"

Cyberinfrastructure for Phylogenetic Research (CIPRES) project is an open collaboration funded by the National Science Foundation. The group is led by Tandy Warnow and involves researchers (biologists, computer scientists, statisticians, and mathematicians) at sixteen institutions. The goal of the CIPRES project is to enable large-scale phylogenetic reconstructions on a scale that will enable analyses of huge data sets containing hundreds of thousands of bio molecular sequences. To achieve this goal we have brought together a group of researchers involved in phylogeny estimation, statistics, and computer science to create new solutions for the difficult computational problems that arise in inferring evolutionary relationships.

The project will create open content electronic textbooks that will be freely available from a website. Distribution will also be possible via paper, CD, or DVD. Our goal initially is to focus on content development and Web distribution, and we will work with relevant authorities to facilitate dissemination by other means when bandwidth is unavailable or inadequate. The goal is to make textbooks available to the many who cannot afford them.

The National Center for Biomedical Ontology is a consortium of leading biologists, clinicians, informaticians, and ontologists who develop innovative technology and methods allowing scientists to create, disseminate, and manage biomedical information and knowledge in machine-processable form. Our visionis that all biomedical knowledge and data are disseminated on the Internet using principled ontologies, such that they are semantically interoperable and useful for improving biomedical science and clinical care. Our resources include the Open Biomedical Ontologies (OBO) library, the Open Biomedical Data (OBD) repositories, and tools for accessing and using this information in research. The Center collaborates with biomedical researchers conducting Driving Biological Projects to enable outside research and stimulate technology development in the Center. The Center undertakes outreach and educational activities (Biomedical Informatics Program) to train future researchers to use biomedical ontologies and related tools with the goal of enhancing scientific discovery.

Mutual respect, trust, and recognition that cultural differences exist, matter, and must be explicitly dealt with are requirements of successful international projects. In summary, I would suggest these principles for the success of international collaboration: * Two (or more) teams share the same goal and seek the overall optimal result, not the local optimum. * Each team should clearly recognize and value the other party's different culture and traditions. * The single most important word in international projects is trust. Team members earn trust by being sincere, honest, and open-minded.

RPI's Tetherless World Constellation will address this emerging area of "Web Science," focusing on the World Wide Web and it's future use. Faculty in the constellation will explore the research and engineering principles that underlie the Web, will enhance the Web's reach beyond the desktop and laptop computer, and will develop new technologies and languages that expand the capabilities of the Web. We will use powerful scientific and mathematical techniques from many disciplines to explore the modeling of the Web from network- and information- centric views. Our goals will include making the next generation web natural to use while being responsive to the growing variety of policy and social needs, whether in the area of privacy, intellectual property, general compliance, or provenance. The Tetherless World Constellation will design new techniques to explore social, scientific, and legal impacts of the evolving technologies deployed on the Web.

The Biomedical Grid Terminology (BiomedGT) is an open, collaboratively developed terminology for translational research. BiomedGT builds on the strengths of the NCI Thesaurus, including concept orientation, description logic, and public accessibility. While the current terminology has been seeded with NCI Thesaurus content, it is being restructured to facilitate open content development. The goal is to evolve BiomedGT into a set of federated sub-terminologies, with content maintained by experts in the relevant research communities.

Sensemaking is the way in which people understand the world at large scale: how they decide what kind of goals are reasonable to try for and what kinds of strategies are worth trying or using. Sensemaking is related to what the military call situational awareness.

This article describes the motivation for and development of a project I have called PepysMap. PepysMap was inspired by the excellent 'blog of the diary of Samuel Pepys run by Phil Gyford 1. Phil posts diary entries day by day (currently for the year 1662). Each blog post contains the text of the diary entry hyperlinked to pages containing detail of people, places and cultural artifacts referenced from the text. The goal of PepysMap is to shadow the development of the Pepys blog by creating a topic map for each diary entry, showing the relationships between people, places and cultural artifacts.

DynaQ stands for 'Dynamic Queries for document based, personal information spaces'. The goal of the project is to conceptualise and to develop a prototypical inquiry system to explore the personal information space, that supports the user with the help of the searching paradigm orienteering. The document-based, personal information space of the user constitutes by all documents on his computer. Included are documents of several file formats (e.g. *.pdf), but also the users emails. Also included are all available meta informations and existing semantic informations according to the documents. Users that are not aware of the scientific context of the project can just think of DynaQ as an desktop search engine.

Mahout's goal is to build scalable, Apache licensed machine learning libraries. Initially, we are interested in building out the ten machine learning libraries detailed in http://www.cs.stanford.edu/people/ang//papers/nips06-mapreducemulticore.pdf using Hadoop. While these algorithms are our initial focus, we welcome contributions of other machine learning approaches.

Our goal is to make the best arguments on all sides of any public debate freely available to all and continuously open to challenge and improvement by all.

This ethnographic study investigates how a project group deals with the contradiction between distributed knowledge in boundary-spanning collaborative processes and the expectation that software systems will provide unified, codified knowledge. Group and individual activities were observed over a period of 18 months, to examine the ways knowledge was presented, recognized, shared, or otherwise managed during joint design of business process and IT systems change. The study explores how knowledge and expertise were translated across organizational boundaries, and identifies four stages in the development of group understanding of how to manage sensemaking and expertise across knowledge boundaries: focus on defining shared goals; acknowledging and sharing tacit knowledge about organizational practice; identifying external influences; and explicit knowledge generation.

An individual may create or reinforce a relationship between two resources by applying a common tag or organizing them in a common folder. This has led to the exploration of techniques for building networks of resources, categories, and people using the social annotations. In order for these techniques to move from the lab to the real world, efficient building and maintenance of these potentially large networks remains a major obstacle. Methods for assembling and indexing these large networks will allow researchers to run more rigorous assessments of their proposed techniques. Toward this goal we explore an approach from the sparse matrix literature and apply it to our system, GiveALink.org. We also investigate distributing the assembly, allowing us to grow the network with the body of resources, annotations, and users.

The recent announcement by Microsoft of a bid to acquire Yahoo! in a hostile takeover provides stark evidence of the continuing complexity of the intersection of computing and media businesses battling for dominance in the global market. Just as in the case of Time-Warner and AOL (Klein, 2003), the proposed Microsoft-Yahoo! deal is about convergence. The big difference, however, is the new context of threats and opportunities which have led to Redmond's latest effort to deploy its legendary financial muscle in pursuit of corporate goals of market domination. This difference emerges from changing conditions of networked media-computing which are in part associated with the rise of Web 2.0 and which provide an essential clue to understanding why Web 2.0 occupies such an important position in contemporary thinking about the Internet. As I will explain in this paper, Web 2.0 can itself be understood fully only by locating its emergence and significance within the broad movement of convergence of old and new media forms.

MOAT (Meaning Of A Tag) provides a Semantic Web framework to publish semantically-annotated content from free-tagging. While tags are widely used in Web 2.0 services, their lack of machine-understandable meaning can be a problem for information retrieval, especially when people use tags that can have different meanings depending on the context. MOAT aims to solve this by providing a way for users to define meaning(s) of their tag(s) using URIs of Semantic Web resources (such as URIs from dbpedia, geonames … or any knowledge base), and then annotate content with those URIs rather than free-text tags, leveraging content into Semantic Web, by linking data together. Moreover, tag meanings can be shared between people, providing an architecture of participation to define and exchange potential meanings of tags within a community of users. To achieve this goal, MOAT relies on an architecture that can be deployed for any organisation or community and that involves a lightweight ontology, a MOAT server, and some third-party clients .

Felix is a community effort to implement the OSGi R4 Service Platform, which includes the OSGi framework and standard services, as well as providing and supporting other interesting OSGi-related technologies. The ultimate goal is to provide a completely compliant implementation of the OSGi framework and standard services and to support a community around this technology. Felix currently implements a large portion of the OSGi release 4 specification, but additional work is necessary for full compliance. Despite this fact, the OSGi framework functionality provided by Felix is very stable.

KHarvester (Informal Knowledge Harvester) is a SOA layer which collects RDF data from web pages. It provides REST based Web Services for managing data available on Social Semantic Information Sources (SSIS): semantic blogs, semantic wikis, and JeromeDL (the Social Semantic Digital Library). These Web Services allow saving harvested data in the informal knowledge repository, and providing them in a form of informal Learning Objects (LOs) that are described accroding to LOM (Learning Object Metadata) standard. Also, IKHarvester is an extension to Didaskon system. Didaskon (διδάσκω - gr. teach) delivers a framework for composing an on-demand curriculum from existing Learning Objects provided by e-Learning services (formal learning). Moreover, the system derives from SSIS which provide informal knowledge. Then, the selection and work-flow scheduling of Learning Objects is based on the semantically annotated specification of the user's current skills/knowledge (pre-conditions), anticipated resulting skills/knowledge (goal) and technical details of the clients platform.

The goal of this twine is to gather relevant information and people around the project of establishing a new adressing layer in cyberspace : semantic space. Semantic space is designed to augment : - semantic interoperability - distributed social semantic computing - exchange of personal and collective interpretation of vast amouts of data - collective intelligence reflexivity