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This interrupted case study for the flipped classroom introduces the human microbiome from the perspective of one of its occupants, Heidi Helicobacter (Helicobacter pylori).  Heidi lives in the gut of Kristen, a college student, and discusses her fellow microbial inhabitants, functions of these various microbes, and alludes to factors that can disrupt the healthy human microbiome. Students prepare for class by viewing several brief videos and then discuss in class whether Kristen should undergo a fecal microbiota transplant to treat her Clostridium difficile infection.  A lab component has students model, using colored beads, how antibiotics can act as a selective agent for drug-resistant microbes such as C. difficile. The case concludes with Kristen about to give birth to a new baby several years later.  Students listen in as Kristen's microbes discuss the formation of the new baby's microbiome. The case has been used successfully in a general biology class and could easily be adapted for a microbiology, human physiology, ecology, or evolution course.

Researchers at the University of Pennsylvania performed "stress tests" on pregnant mice using a predator's odor, restraint, or unfamiliar noises. After the mice gave birth, the scientists analyzed the bacterial communities in their vaginas and in their pups' colons. The researchers found that stress during pregnancy altered the expression levels of several proteins involved in vaginal immunity and the frequency of Lactobacillus bacteria, which, expectedly, correlated to lower frequencies of Lactobacillus within their pups' gut microbiomes. Male pups of stressed mothers also displayed an increase in anaerobic bacteria like Clostridium and Bacteroidesin.

Our bodies are home to approximately 100 trillion bacteria living inside us and on us-a vast community known as the microbiome. The Secret World Inside You explores the rapidly evolving science that is revealing the complexities of the human microbiome and reshaping our ideas about human health, offering new perspectives on common health problems including allergies, asthma, and obesity. 

The next time you look in a mirror, think about this: In many ways you're more microbe than human. There are 10 times more cells from microorganisms like bacteria and fungi in and on our bodies than there are human cells. But these tiny compatriots are invisible to the naked eye. So we asked artist Ben Arthur to give us a guided tour of the rich universe of the human microbiome.

Sonnenburg, his wife Erica, and the graduate student Samuel Smits confirmed this idea in a recent experiment. The researchers started with mice that had been raised in sterile bubbles and then loaded with identical collections of gut microbes. They then fed these mice a high-fiber diet, before randomly switching half of them to low-fiber chow for seven weeks. Predictably, the fall in fiber caused upheavals in the rodents' guts. In the low-fiber group, the numbers of 60 percent of the local microbe species fell dramatically, and some remained low even after the mice returned to high-fiber meals. Those seven low-fiber weeks left lingering scars on the animals' microbiomes.

Microbiome cloud story 4:12

Research has revealed striking differences in the trillions of bacteria - a.k.a., the microbiome - in the intestines of children with and without autism. But the gut bacteria in individuals with autism aren't just different. Researchers at the California Institute of Technology have shown for the first time that they may actually contribute to the disorder. They reported in the journal Cell in December 2013 that an experimental probiotic therapy alleviated autism-like behaviors in mice and are already planning a clinical trial.

The bacteria in our guts can break down food the body can't digest, produce important nutrients, regulate the immune system, and protect against harmful germs. And while we can't control all the factors that go into maintaining a healthy gut microbiome, we can manipulate the balance of our microbes by paying attention to what we eat. Shilpa Ravella shares the best foods for a healthy gut.

In short, you have an aura, except it isn't made of purplish light; it's your personal cloud of dead skin cells, fungus and many, many microbes. And researchers are learning to be able to identify you by it.

human microbiology lessons

OpenBiome (full name Microbiome Health Research Institute Inc.) is a nonprofit organization dedicated to expanding safe access to fecal microbiota transplantation (FMT) therapies. Founded by a small team of microbiologists, public health advocates, and concerned citizens, OpenBiome aims to significantly reduce the practical barriers for clinicians providing FMTs, while connecting scientists across studies and disciplines. 

Hilary Brown is a PhD student, working in the infection genomics group at the Wellcome Trust Sanger Institute. In this film he describes how to work safely in the lab with bacteria from the human gut including culturing them on agar plates and extracting the DNA for genome sequencing. The infection genomics programme uses a variety of different research approaches to study the biology and evolution of disease-causing organisms such as viruses, bacteria and parasites and understand how they cause disease in humans and other animals.

American Museum of Natural History Explore the natural world with Science Bulletins; our documentary Feature Stories, Data Visualizations, and News updates focus on recent discoveries and new technologies in astrophysics, Earth science, biodiversity, and human health and evolution.

UCLA researchers now have the first evidence that bacteria ingested in food can affect brain function in humans. In an early proof-of-concept study of healthy women, they found that women who regularly consumed beneficial bacteria known as probiotics through yogurt showed altered brain function, both while in a resting state and in response to an emotion-recognition task.

Dubilier is hardly alone in her plight. A heaping teaspoon of soil or a shot of ocean water may contain as many as one million bacterial species. Many of them are potential gold mines of chemicals and metabolites with medicinal, engineering, and energy applications. But when researchers have tried to culture these microbes in the lab, only a minority of cells form colonies. Clearly, nutrients, a carbon source, and time are usually not enough to coax bacteria isolated from the wild to grow in a laboratory setting. So what's the missing ingredient?

3:45 video, From the microbes in our stomachs to the ones on our teeth, we are homes to millions of unique and diverse communities which help our bodies function. Jessica Green and Karen Guillemin emphasize the importance of understanding the many organisms that make up each and every organism.

Why do we smell different when we're sick? Why does cheese smell like feet? Why don't vultures get sick from eating rotting meat? Science is filled with stories: some of them are beautiful and some of them are gross. Really gross. Gross Science, a YouTube series hosted by Anna Rothschild, tells bizarre stories from the slimy, smelly, creepy world of science. In this collection, you'll find original short-form videos and DIY experiments from Gross Science, which is produced by NOVA and PBS Digital Studios. Learn about amphibians that eat their mother's skin, strange uses for bacon, how poop can be used to cure an infection, and more gross science topics.

For more than 100 years, the standard treatment for appendicitis has been surgery. Now a large Finnish study provides the best evidence to date that most patients can be treated with antibiotics alone. The study, published Tuesday in JAMA, involved 530 patients aged 18 to 60 who agreed to have their treatment - antibiotics or surgery - decided at random.

If you think you can rid your body of bacteria with a quick squirt of hand sanitizer, you'd be oh so wrong. Turns out we have an incredible array of microorganisms living on us AND inside us. But as Anthony tells you, these little guys do some very important work.