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Casey Finnerty

How Influenza (Flu) Vaccines Are Made | Seasonal Influenza (Flu) | CDC - 0 views

  • The most common way that flu vaccines are made is using an egg-based manufacturing process that has been in existence for more than 70 years. Egg-based vaccine manufacturing is used to make both
  • The most common way that flu vaccines are made is using an egg-based manufacturing process that has been in existence for more than 70 years.
  •  
    As a follow-up to yesterday, here is a nice summary on influenza vaccine production.
Sean Hogan

Rabies Virus Hijacks and Accelerates the p75NTR Retrograde Axonal Transport Machinery - 14 views

  • Our data support this finding, as we demonstrated that RABV is transported in acidic compartments (Fig. 6), and mostly in p75NTR-positive endosomes (Fig. 7).
    • nleonard11
       
      Why is RABV transported in acidic compartments? 
  • RABV enters the peripheral nervous system and undergoes long-distance transport arriving at the cell soma and subsequently the CNS [6]. As peripheral neurons are highly polarized cells with long axons, active intracellular transport is vital to the maintenance of neuronal function and survival [7], [8]
    • laceemarie
       
      As RABV is travelling along the axons, does it interfere with the nerve signals that are also travelling there? I know that rabies results in quite a few neurological symptoms, but do these occur when the virus reaches the central nervous system (ultimately the brain) or as soon as RABV enters an axon of the PNS?
  • In neurons, infected cells may mistake RABV particles for cargo and thus recruit trafficking components, allowing viral particles to undergo long-range axonal transport to the neuronal cell body, as was found in the case of adenovirus and the CAR receptor
    • ameliaobert
       
      Most confusing: How would a cell "mistake" a virus particle for cargo and then give it direct access to the nucleus? Does it have specific signals radiating from it or receptors that triggers this trafficking component mishap?
  • ...6 more annotations...
  • we suggest that RABV hijacks a specific mechanism that enables the neuron to transport cargos over long distances.
    • ameliaobert
       
      To my further question: is this the cellular "mistake" that is happening by the cell that aids in trafficking of this virus? If so interesting that is isn't the cell itself, but the virus taking over a cellular process.
  • Rabies virus (RABV) is a neurotropic virus that depends on long distance axonal transport in order to reach the central nervous system (CNS).
    • alexridesducati
       
      This research shows that RABV doesnt need to be transported via p75NTR, but when it is, it is done with acidic compartments and reaches the target area faster. Also, it was mentioned that the acididty of the compartment induced a conformational change of the virus for membrane fusion. Is there any sort of correlation between speed and compartment acidity, or are there significant structural changes due to acidity that may allow for the virus to reach its destination sooner than if it were p75NTR independent?
  • Measuring both the area and average intensities of the RABV particles in each group, we found that the p75NTR positive RABV particles were larger in size, (average area of 1.34±0.09 µm2 vs. 0.81±0.07 µm2, p<0.0005), and had stronger intensity of GFP signal, when normalized to the average intensity of RABV particles in each experiment (1.24±0.11 vs. 0.61±0.1, p<0.001) (Fig. 8K–L).
    • abachman12
       
      Does this occur naturally within the human body? So does this mean that the rabies virus can be even more dangerous than it already is?
  • ence there are likely to be additional ways for RABV to merge into the p75NTR-RABV endosome
    • rmeloche10
       
      Is there any sort of idea on the other ways that RABV can merge into an endosome, or is this just theoretical?
  • Other membrane-associated components have also been implicated in RABV binding [20]. By binding one of its receptors, RABV could enter the cell and activate downstream signaling which would allow it to hijack and manipulate axonal transport machineries. Although p75NTR is known to be involved in the retrograde transport of neurotrophic factors, little is known regarding its direct contribution to viral transport.
    • Sean Hogan
       
      Is the p75NTR receptor internalized and does it become part of the endosomal membrane during RABV internalization? Could continued signaling from the receptor bound to the endosome membrane be responsible for the manipulation of the axonal transport?
  • Possibly, RABV binding to dynein tethers projecting microtubules (MT) in the cell cortex thereby facilitating its retrograde trafficking from the cell periphery. Following this tethering, RABV particles can merge into the RABV-p75NTR endosomes and travel to the neuron cell body.
    • Sean Hogan
       
      So in the slower transport of RABV without the endosome the interaction between the negative phosphoprotein P and dynein must be sufficient for transport down the microtubules. 
  •  
    Friday 11-7-14, paper
slgoogin8981

Virus-Mediated Compartmentalization of the Host Translational Machinery - 22 views

  • Similarly, the viral single-stranded RNA binding protein σNS localized to the factory margins and had a tubulovesicular staining pattern that extended a short distance from the margins of the factories and colocalized with endoplasmic reticulum (ER) markers.
    • nleonard11
       
      This reovirus has single-stranded RNA rather than double stranded. Research. σNS is a binding protein that has an affinitiy for single-stranded RNA. Why is it used for doulbe-stranded RNA.
  • We further show that the nonstructural protein σNS strongly colocalizes and immunoprecipitates with two proteins in the 43S preinitiation complex (PIC), eIF3A and pS6R, suggesting a role for σNS in the recruitment or maintenance of ribosomes within VF.
    • laceemarie
       
      If σNS is involved in ribosome recruitment and/or maintenance, this seems like a good target for an antiviral therapy. 
  • This model implies that newly synthesized viral proteins must, by some mechanism(s), be trafficked back into the factory to participate in replication and assembly. Data supporting this model are limited.
    • laceemarie
       
      "Limited," but still exists. So under what circumstances did/could this happen? Could it be a possible way to avoid an antiviral drug that inhibits σNS?
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  • Within the VF, viral core particles transcribe and release viral mRNAs that possess a dimethylated cap 1 structure at the 5′ terminus but lack a poly(A) tail (19).
    • alexridesducati
       
      It seems that Reovirus recruits host proteins in order to replicate, and in this sentence we see that the viral mRNAs use a dimethlyated cap vs. the traditional host methylguanosine cap. Does this have any sort of impact on initiation factors associated with the ribosome? The viral mRNA also seems to be lacking in a poly-A tail. Is it because the mRNAs are created in a VF that they dont need to worry about having one?
    • abachman12
       
      I was also thinking the same thing. Does this have any effects on the initiation factors in whole? Does it change anything or do anything different than normal?
  • Consistent with our findings, the authors noted that the rough endoplasmic reticulum (RER) made numerous contacts with VF, which they suggested may indicate a role for RER in the transport of newly synthesized viral proteins to the VF, as is the case for rubella virus (64).
    • joeyevenson
       
      The rough endoplasmic reticulum may be involved in the transport of newly synthesizes viral proteins to the viral factory, could an antiviral that targets the endoplasmic reticulum prevent these newly synthesized proteins from ever getting that far? Does the host do this as a response to the virus? Or is it the virus controlling the cell to transport the viral proteins?
  • To address this, we monitored protein expression levels of eIF4E, eIF4A1, and eIF4G over the course of an infection. As others have found (39), we were unable to detect any difference in the levels of total protein in mock versus infected cells from 0 to 20 h p.i. (Fig. 3C and data not shown). Together, these data suggest that cellular translation proteins are redistributed to the VF.
    • becky214
       
      I am confused as to how the data is showing that these proteins are redistributed to the VF.
  • Most reovirus strains form filamentous VF through an association with stabilized microtubules. However, the T3D strain used in these experiments contains a temperature-sensitive mutation in the viral protein μ2 that prevents this association, resulting in the production of globular VF at 37°C (27, 28). Therefore, to evaluate if PMY labeling occurs within filamentous viral factories, we infected cells with the serotype 1 Lang (T1L) strain. As we found for T3D-infected cells, the PMY labeling localized to T1L VF at 18 h postinfection
    • rmeloche10
       
      Is this temperature sensitive mutation put in place by the authors? Or is the mutation a natural feature of the virus, if it is would there be any reason for inhibiting the micro tubule stabalization? 
  • It was unclear if this was a result of increased expression levels or as a consequence of redistribution of the proteins to the factories. To address this, we monitored protein expression levels of eIF4E, eIF4A1, and eIF4G over the course of an infection. As others have found (39), we were unable to detect any difference in the levels of total protein in mock versus infected cells from 0 to 20 h p.i. (Fig. 3C and data not shown). Together, these data suggest that cellular translation proteins are redistributed to the VF.
    • Sean Hogan
       
      I had a little trouble wrapping my brain around this part. If the IF proteins are expressed at similar levels then what is the cause of the redistribution? Does it have to do with the sigma NS interaction and then eventually the preinitiation complex is recruited?
  • Our finding that σNS interacts with eIF3A and pS6R suggests that translational machinery is recruited to the factory by viral proteins. This is consistent with the finding of others that σNS cosediments with 40S and 60S ribosomes (62) and suggests that σNS is directly involved in viral translation.
    • Sean Hogan
       
      I feel like a  loss of function experiment (sigma NS) would provide an answer for this.  
  • FIG 3  Cellular translation initiation factors colocalize to viral factories. (A, B) CV-1 cells were infected with T3D or T1L at an MOI of 1. At 18 h p.i., RPM-labeled cells were coimmunostained for μNS and eIF4E (A) or eIF3A (B). Scale bars, 10 µm. (C) CV-1 cells were infected with T3D, MOI of 3, for the times indicated. Protein levels were assessed by immunoblotting. M = mock.
    • apopp10
       
      I am having trouble interpreting both this figure and figure 4 immediately following it. How do these figures exactly support the claim that transcription initiation, elongation, termination and recycling factors are recruited to viral factories?
    • slgoogin8981
       
      Does the viral factor protect the dsRNA from RIG-1? Earlier the paper spoke of energy balances, does the viral factor require a lot of energy to be created?
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    Focus paper for friday
Casey Finnerty

Retroviruses and the Placenta - 0 views

  •  
    This paper is a nice review of the ERV/placental evolution story.
apopp10

CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes - 4 views

  • Numerous bacteria have been selected by humans and used extensively for fermentation and biotechnology processes. Unfortunately, domesticated bacteria used in industrial applications are often susceptible to phage attack, including genera and species widely used as dairy cultures (4).
    • apopp10
       
      Which bacteria are most susceptible to these phage attacks? Those that do not contain these CRISPR sequences? It would be interesting to see the breadth of phages that this "immune response" of bacteria could fight off.
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