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thinkahol *

Mind-reading scan identifies simple thoughts - health - 26 May 2011 - New Scientist - 3 views

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    A new new brain imaging system that can identify a subject's simple thoughts may lead to clearer diagnoses for Alzheimer's disease or schizophrenia - as well as possibly paving the way for reading people's minds. Michael Greicius at Stanford University in California and colleagues used functional magnetic resonance imaging (fMRI) to identify patterns of brain activity associated with different mental states. He asked 14 volunteers to do one of four tasks: sing songs silently to themselves; recall the events of the day; count backwards in threes; or simply relax. Participants were given a 10-minute period during which they had to do this. For the rest of that time they were free to think about whatever they liked. The participants' brains were scanned for the entire 10 minutes, and the patterns of connectivity associated with each task were teased out by computer algorithms that compared scans from several volunteers doing the same task. This differs from previous experiments, in which the subjects were required to perform mental activities at specific times and the scans were then compared with brain activity when they were at rest. Greicius reasons his method encourages "natural" brain activity more like that which occurs in normal thought.
thinkahol *

New MRSA superbug discovered in cows' milk - health - 03 June 2011 - New Scientist - 1 views

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    A new strain of MRSA has been identified in cows' milk and in people, but don't stop drinking milk - the bug is killed off in pasteurisation. However, the strain evades detection by standard tests used by some hospitals to screen for MRSA (methicillin-resistant Staphylococcus aureus), potentially putting people at risk. Laura Garcia Alvarez, then at the University of Cambridge, and colleagues were studying infections in British cows when they discovered antibiotic-resistant bacteria that they thought were MRSA. However, tests failed to identify the samples as any known strains of the superbug. Sequencing the mystery bacteria's genomes revealed a previously unknown strain of MRSA with a different version of a gene called MecA. The new strain was also identified in samples of human MRSA, and is now known to account for about 1 per cent of human MRSA cases.
Erich Feldmeier

Cory Abate-Shen: A Molecular Signature Predictive of Indolent Prostate Cancer - 0 views

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    Many newly diagnosed prostate cancers present as low Gleason score tumors that require no treatment intervention. Distinguishing the many indolent tumors from the minority of lethal ones remains a major clinical challenge. We now show that low Gleason score prostate tumors can be distinguished as indolent and aggressive subgroups on the basis of their expression of genes associated with aging and senescence. Using gene set enrichment analysis, we identified a 19-gene signature enriched in indolent prostate tumors. We then further classified this signature with a decision tree learning model to identify three genes-FGFR1, PMP22, and CDKN1A-that together accurately predicted outcome of low Gleason score tumors. Validation of this three-gene panel on independent cohorts confirmed its independent prognostic value as well as its ability to improve prognosis with currently used clinical nomograms. Furthermore, protein expression of this three-gene panel in biopsy samples distinguished Gleason 6 patients who failed surveillance over a 10-year period. We propose that this signature may be incorporated into prognostic assays for monitoring patients on active surveillance to facilitate appropriate courses of treatment.
Skeptical Debunker

Tally of Antarctic Sealife Sheds Light on Changing Climate - 0 views

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    More than 6,000 different species living on the sea-floor have been identified so far and more than half of these are unique to the icy continent. A combination of long-term monitoring studies, newly gathered information on the marine life distribution and global ocean warming models, enable the scientists to identify Antarctica's marine "biodiversity hotspots". Researcher Griffiths describes how krill populations (the shrimp-like invertebrates eaten by penguins, whales and seals) are reducing as a result of a decrease in sea-ice cover. A much smaller crustacean (copepods) is dominating the area once occupied by them. This shifts the balance of the food web to favour predators, like jellyfish, that are not eaten by penguins and other Southern Ocean higher predators. Sea-ice reduction is also affecting penguins that breed on the ice.
Janos Haits

About ORCID | Connecting Research and Researchers - 0 views

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    ORCID provides a persistent digital identifier that distinguishes you from every other researcher and, through integration in key research workflows such as manuscript and grant submission, supports automated linkages ..
Charles Daney

The Great Beyond: Alzheimer's genes identified - 0 views

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    Three new genes associated with Alzheimer's have been discovered, to the delight of researchers in the field. In two papers published in Nature Genetics, two teams describe how they compared the genomes of sufferers to healthy controls to identify potential gene variations leading to the disease.
thinkahol *

Scientists identify DNA that may contribute to each person's uniqueness | KurzweilAI - 0 views

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    Building on a tool that they developed in yeast four years ago, researchers at the Johns Hopkins University School of Medicine scanned the human genome and discovered what they believe is the reason people have such a variety of physical traits and disease risks.
Skeptical Debunker

We're so good at medical studies that most of them are wrong - 0 views

  • Statistical validation of results, as Shaffer described it, simply involves testing the null hypothesis: that the pattern you detect in your data occurs at random. If you can reject the null hypothesis—and science and medicine have settled on rejecting it when there's only a five percent or less chance that it occurred at random—then you accept that your actual finding is significant. The problem now is that we're rapidly expanding our ability to do tests. Various speakers pointed to data sources as diverse as gene expression chips and the Sloan Digital Sky Survey, which provide tens of thousands of individual data points to analyze. At the same time, the growth of computing power has meant that we can ask many questions of these large data sets at once, and each one of these tests increases the prospects than an error will occur in a study; as Shaffer put it, "every decision increases your error prospects." She pointed out that dividing data into subgroups, which can often identify susceptible subpopulations, is also a decision, and increases the chances of a spurious error. Smaller populations are also more prone to random associations. In the end, Young noted, by the time you reach 61 tests, there's a 95 percent chance that you'll get a significant result at random. And, let's face it—researchers want to see a significant result, so there's a strong, unintentional bias towards trying different tests until something pops out. Young went on to describe a study, published in JAMA, that was a multiple testing train wreck: exposures to 275 chemicals were considered, 32 health outcomes were tracked, and 10 demographic variables were used as controls. That was about 8,800 different tests, and as many as 9 million ways of looking at the data once the demographics were considered.
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    It's possible to get the mental equivalent of whiplash from the latest medical findings, as risk factors are identified one year and exonerated the next. According to a panel at the American Association for the Advancement of Science, this isn't a failure of medical research; it's a failure of statistics, and one that is becoming more common in fields ranging from genomics to astronomy. The problem is that our statistical tools for evaluating the probability of error haven't kept pace with our own successes, in the form of our ability to obtain massive data sets and perform multiple tests on them. Even given a low tolerance for error, the sheer number of tests performed ensures that some of them will produce erroneous results at random.
Janos Haits

Frontpage | About ORCID - 0 views

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    ORCID.org provides a persistent digital identifier that distinguishes you from every other researcher and, through integration in key research workflows such as manuscript and grant submission, supports automated linkages between you and your professional activities ensuring that your work is recognized.
Erich Feldmeier

Kritika Moha, Gregory Weiss: Inexpensive, accurate way to detect prostate cancer: At-ho... - 0 views

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    "The same technology could potentially be used for bladder and multiple myeloma cancers, which also shed identifiable markers in urine. "Our goal is a device the size of a home pregnancy test priced around $10. Other prostate cancer tests coming to market cost up to $4,000 each. The UC Irvine team made price a key design factor of their work..The UC Irvine team developed a new type of sensor: They added nanoscale protein receptors to tiny, pencil-like viruses called phages that live only within bacteria. Double wrapping the phages with additional receptors greatly increases the capture and transmission of cancer molecule signals."
Janos Haits

UCSC Genomics Text Indexing - 0 views

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    UCSC Genome Bioinformatics Genocoding Project Genomic Text Indexing: Scanning papers for genomic identifiers and mapping them to the human genome. We currently recognize DNA and protein sequences, SNPs, bands and gene symbols.
Janos Haits

ResearcherID.com - 0 views

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    ResearcherID is a global, multi-disciplinary scholarly research community. With a unique identifier assigned to each author in ResearcherID, you can eliminate author misidentification and view an author's citation metrics instantly. Search the registry to find collaborators, review publication lists and explore how research is used around the world.
Erich Feldmeier

K.Fliessbach, B. Weber, ... Frontiers | Neural responses to advantageous and disadvanta... - 0 views

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    "It is a widely accepted principle of distributive justice that goods should be distributed to individuals according to their contribution, i.e., people should receive equal pay for equal work (equity principle)...Recently, neuroscientific studies have begun to address neural processes underlying social and economic phenomena like e.g., reactions to norm violations, status concerns, and reactions to unfair behavior. These studies have convergingly identified brain regions that are important for these aspects of social behavior. One consistent finding is that activations of the dopaminergic mesolimbic ("reward") system, especially the nucleus accumbens (NAcc) do not exclusively reflect material self-interest, but also social aspects
Janos Haits

Aristotele - 0 views

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    ARISTOTELE aims at relating the learning process to the organizational one as well as to the innovation process management. In the organizational contexts three main kinds of processes are traditionally identified: organizational processes (marketing & communication, human resources management, business), learning processes (group training sessions) and social collaboration processes (spontaneous formation of groups within the organization).
Erich Feldmeier

Enterotypes of the human gut microbiome : Nature : Nature Publishing Group - 0 views

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    "Our knowledge of species and functional composition of the human gut microbiome is rapidly increasing, but it is still based on very few cohorts and little is known about variation across the world. By combining 22 newly sequenced faecal metagenomes of individuals from four countries with previously published data sets, here we identify three robust clusters (referred to as enterotypes hereafter) that are not nation or continent specific. We also confirmed the enterotypes in two published, larger cohorts, indicating that intestinal microbiota variation is generally stratified, not continuous. This indicates further the existence of a limited number of well-balanced host-microbial symbiotic states that might respond differently to diet and drug intake."
Janos Haits

Home : SAGE Research Methods Online - 0 views

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    SAGE Research Methods Online (SRMO) is an award-winning research methods tool created to help researchers, faculty and students with their research projects. SRMO links over 100,000 pages of SAGE's renowned book, journal and reference content with truly advanced search and discovery tools. Researchers can explore methods concepts to help them design research projects, understand a particular method or identify a new method, and write up their research. Since SRMO focuses on methodology rather than disciplines, it can be used by researchers from the social sciences, health sciences and more.
Ilmar Tehnas

Mars Express radar gives strong evidence for former Mars ocean - 1 views

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    Would be nice to see the actual strata that has been identified. As such, it is a statement with no supporting evidence. Has a paper been written?
Janos Haits

Research [OCLC - Home] - 0 views

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    OCLC Research works with the community to collaboratively identify problems and opportunities, prototype and test solutions, and share findings through publications, presentations and professional interactions.
Erich Feldmeier

Spiegelman: Scientists find molecular link to obesity/insulin resistance in mice - 0 views

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    "For this study, the investigators bred mice lacking TRPV4 or administered a drug to deactivate it. In the absence of TRPV4, white cells turned on a set of genes that consume energy to produce heat, rather than storing the energy as excess fat. This "thermogenic" process normally occurs in brown or beige fat (commonly called "good fat"), which is found mostly in small animals and human infants to protect against cold. When the TRPV4-deficient mice were put on a high-calorie diet for several weeks, they did not become obese, and their level of fat cell inflammation and insulin resistance was lowered. "We have identified a target that, when inhibited, can activate beige adipose tissue and suppress inflammation," said Spiegelman."
Janos Haits

Real-time Web Monitor - 0 views

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    "Akamai monitors global Internet conditions around the clock. With this real-time data we identify the global regions with the greatest attack traffic, cities with the slowest Web connections (latency), and geographic areas with the most Web traffic (traffic density)."
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