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video 2:47 Gene 'switches' are what really make humans tick

Early-response genes, which are important for synaptic plasticity, are "switched off" under basal conditions by topological constraints. Neuronal activity triggers DNA breaks in a subset of early-response genes, which overrides these topological constraints, and "switches on" gene expression.

A Cornell study offers further proof that the divergence of humans from chimpanzees some 4 million to 6 million years ago was profoundly influenced by mutations to DNA sequences that play roles in turning genes on and off.

Meiosis, the form of cell division unique to egg and sperm production, sets the stage for sex determination by creating sperm that carry either an X or a Y sex chromosome. But what is it about the X or Y that determines sex? Before a meiotic cell divides, its two sets of chromosomes come together and cross over, or swap, segments. The first animation shows normal crossing over, where the X and Y chromosomes exchange pieces only at their tips. The second animation shows a rare mistake in which the Y chromosome transfers a gene called SRY to the X chromosome, resulting in sex-reversed babies. Studies of sex-reversed individuals led researchers to identify the master switch for sex determination, the SRY gene, which tells a fetus to become a boy.

Meiosis, the form of cell division unique to egg and sperm production, sets the stage for sex determination by creating sperm that carry either an X or a Y sex chromosome. But what is it about the X or Y that determines sex? Before a meiotic cell divides, its two sets of chromosomes come together and cross over, or swap, segments. The first animation shows normal crossing over, where the X and Y chromosomes exchange pieces only at their tips. The second animation shows a rare mistake in which the Y chromosome transfers a gene called SRY to the X chromosome, resulting in sex-reversed babies. Studies of sex-reversed individuals led researchers to identify the master switch for sex determination, the SRY gene, which tells a fetus to become a boy.

An environmentally dependent method to excise particular genes and eliminate genetically modified organisms (GMOs) if they leave the lab, published this week (May 19) in Nature Communications, uses an inducible CRISPR/Cas9 genome-editing system to snip out vital pieces of the E. coli genome.

Why does a snake have 25 or more rows of ribs, whereas a mouse has only 13? The answer, according to a new study, may lie in "junk DNA," large chunks of an animal's genome that were once thought to be useless. The findings could help explain how dramatic changes in body shape have occurred over evolutionary history. Scientists began discovering junk DNA sequences in the 1960s. These stretches of the genome-also known as noncoding DNA-contain the same genetic alphabet found in genes, but they don't code for the proteins that make us who we are. As a result, many researchers long believed this mysterious genetic material was simply DNA debris accumulated over the course of evolution. But over the past couple decades, geneticists have discovered that this so-called junk is anything but. It has important functions, such as switching genes on and off and setting the timing for changes in gene activity. 

Hyper-IgM syndrome is an X-linked genetic disorder more commonly affecting males than females. It is caused by the lack of heavy chain class-switching from IgM to other isotypes. Patients with hyper-IgM syndrome are susceptible to a variety of infections as demonstrated in this medical case study. Students are presented patient information, symptoms and a diagnosis that must be interpreted. The case was written for use with the team-based learning (TBL) format involving groups of 4-5 students per group, but it could also be completed as an individual project. The case is targeted to premedical/allied health advanced students and is appropriate for any immunology course at the undergraduate or graduate level in a biomedical science program, or health-related professional courses such as advanced physiology, pathophysiology, microbiology, or histology and cytology.

Solar power is cheaper and more sustainable than our current coal-fueled power plants, so why haven't we made the switch? The real culprits here are the clouds, which make solar power difficult to control.

Quick look: In its modern sense, epigenetics is the term used to describe inheritance by mechanisms other than through the DNA sequence of genes. It can apply to characteristics passed from a cell to its daughter cells in cell division and to traits of a whole organism. It works through chemical tags added to chromosomes that in effect switch genes on or off.

When you look at yourself in the mirror you may ask, 'How, given that all the cells in my body carry the same DNA, can my organs look so unlike and function so differently?' With the recent progress in epigenetics, we are beginning to understand. We now know that cells use their genetic material in different ways: genes are switched on and off, resulting in the astonishing level of differentiation within our bodies.

Over a million people in the United States have some form of Inflammatory Bowel Disease or IBD. It can be caused by intestinal bacteria, environment or genetics. One thing is for sure, the lining of the intestines don't work correctly because the cells have been disturbed by one of these things. A common finding in Crohn's and IBD is that a molecule called TNF is elevated, and starts the inflammation process. Researchers still don't know what signals the TNF to go up, but maybe they can turn it off with another molecule.

Sonnenburg, his wife Erica, and the graduate student Samuel Smits confirmed this idea in a recent experiment. The researchers started with mice that had been raised in sterile bubbles and then loaded with identical collections of gut microbes. They then fed these mice a high-fiber diet, before randomly switching half of them to low-fiber chow for seven weeks. Predictably, the fall in fiber caused upheavals in the rodents' guts. In the low-fiber group, the numbers of 60 percent of the local microbe species fell dramatically, and some remained low even after the mice returned to high-fiber meals. Those seven low-fiber weeks left lingering scars on the animals' microbiomes.

This flipped case was designed to introduce students in a general introductory biology course to basic protein structure. The two videos and interrupted case use keratins in hair as model proteins. From the videos students learn how amino acids regulate protein structure, and how small changes in amino acid sequence have large impacts on overall protein organization and function. The case story focuses on a puppy whose hair changes from straight to curly when it sheds its coat. The protagonist tests the adult versus puppy hair, and discovers that the amino acid composition is different in the curly versus straight hair samples. Students apply basic principles of protein structure to hypothesize why the dog's coat switched from straight to curly. The case intentionally stops short of providing a complete answer to the mystery, so students think through the molecular processes logically rather than having a final "correct" answer. An optional activity is provided that makes the case more appropriate for an introductory cell biology class.

activities complementing 15 minute video about evolution and natural selection in stickleback fishes

Sometimes, a genetic tweak can make a really big difference in an animal's appearance. That's what likely happened when the predecessors of modern snakes lost their legs, a process that started some 150 million years ago, two separate groups of scientists have discovered. Although the teams took very different approaches to solve the mystery of how those limbs vanished, both came up with similar results: Mutations in DNA located near a gene key to limb formation keep that gene from ever turning on, they report today.

This case study focuses on the relationship between evolution and plasticity using a hands-on, inquiry-based approach. Students view examples from the literature that illustrate the difference between nature and nurture, or the relative contributions of genes and the environment in shaping phenotypes. Using the Trinidadian guppy system as an example, students learn about seminal work in the field in addition to exploring quantitative genetic techniques used to partition phenotypic variance between genes (G) and the environment (E). They use real data from one of the publications cited in the case to graph reaction norms illustrating GxE interactions at the family and population level. The inquiry-based approach means that students are introduced to new concepts in a stepwise fashion, and asked to develop and build their understanding using causal, explanatory evidence. The case concludes with an exercise in which students apply their knowledge to a real conservation problem in Trinidad and Tobago, where guppies are native. This case would be appropriate for an upper level biology, genetics, or evolution course.

Almost every cell in your body has the same DNA sequence. So how come a heart cell is different from a brain cell? Cells use their DNA code in different ways, depending on their jobs. Just like orchestras can perform one piece of music in many different ways. A cell's combined set of changes in gene expression is called its epigenome. This week Nature publishes a slew of new data on the epigenomic landscape in lots of different cells. Learn how epigenomics works in this video. Read the latest research on epigenetics at http://www.nature.com/epigenomeroadmap