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Weiye Loh

Cancer resembles life 1 billion years ago, say astrobiologists - microbiology, genomics... - 0 views

www.lifescientist.com.au/..._years_ago_say_astrobiologists

Cancer Evolution Life

shared by Weiye Loh on 17 Feb 11 - No Cached
  • astrobiologists, working with oncologists in the US, have suggested that cancer resembles ancient forms of life that flourished between 600 million and 1 billion years ago.
  • Read more about what this discovery means for cancer research.
  • The genes that controlled the behaviour of these early multicellular organisms still reside within our own cells, managed by more recent genes that keep them in check.It's when these newer controlling genes fail that the older mechanisms take over, and the cell reverts to its earlier behaviours and grows out of control.
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  • The new theory, published in the journal Physical Biology, has been put forward by two leading figures in the world of cosmology and astrobiology: Paul Davies, director of the Beyond Center for Fundamental Concepts in Science, Arizona State University; and Charles Lineweaver, from the Australian National University.
  • According to Lineweaver, this suggests that cancer is an atavism, or an evolutionary throwback.
  • In the paper, they suggest that a close look at cancer shows similarities with early forms of multicellular life.
  • “Unlike bacteria and viruses, cancer has not developed the capacity to evolve into new forms. In fact, cancer is better understood as the reversion of cells to the way they behaved a little over one billion years ago, when humans were nothing more than loose-knit colonies of only partially differentiated cells. “We think that the tumours that develop in cancer patients today take the same form as these simple cellular structures did more than a billion years ago,” he said.
  • One piece of evidence to support this theory is that cancers appear in virtually all metazoans, with the notable exception of the bizarre naked mole rat."This quasi-ubiquity suggests that the mechanisms of cancer are deep-rooted in evolutionary history, a conjecture that receives support from both paleontology and genetics," they write.
  • the genes that controlled this early multi-cellular form of life are like a computer operating system's 'safe mode', and when there are failures or mutations in the more recent genes that manage the way cells specialise and interact to form the complex life of today, then the earlier level of programming takes over.
  • Their notion is in contrast to a prevailing theory that cancer cells are 'rogue' cells that evolve rapidly within the body, overcoming the normal slew of cellular defences.
  • However, Davies and Lineweaver point out that cancer cells are highly cooperative with each other, if competing with the host's cells. This suggests a pre-existing complexity that is reminiscent of early multicellular life.
  • cancers' manifold survival mechanisms are predictable, and unlikely to emerge spontaneously through evolution within each individual in such a consistent way.
  • The good news is that this means combating cancer is not necessarily as complex as if the cancers were rogue cells evolving new and novel defence mechanisms within the body.Instead, because cancers fall back on the same evolved mechanisms that were used by early life, we can expect them to remain predictable, thus if they're susceptible to treatment, it's unlikely they'll evolve new ways to get around it.
  • If the atavism hypothesis is correct, there are new reasons for optimism," they write.
  • Weiye Loh on 17 Feb 11
     
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Weiye Loh

Skepticblog » A Creationist Challenge - 0 views

skepticblog.org/...a-creationist-challenge

Creationism Evolution Logic

shared by Weiye Loh on 01 Mar 11 - No Cached
  • The commenter starts with some ad hominems, asserting that my post is biased and emotional. They provide no evidence or argument to support this assertion. And of course they don’t even attempt to counter any of the arguments I laid out. They then follow up with an argument from authority – he can link to a PhD creationist – so there.
  • The article that the commenter links to is by Henry M. Morris, founder for the Institute for Creation Research (ICR) – a young-earth creationist organization. Morris was (he died in 2006 following a stroke) a PhD – in civil engineering. This point is irrelevant to his actual arguments. I bring it up only to put the commenter’s argument from authority into perspective. No disrespect to engineers – but they are not biologists. They have no expertise relevant to the question of evolution – no more than my MD. So let’s stick to the arguments themselves.
  • The article by Morris is an overview of so-called Creation Science, of which Morris was a major architect. The arguments he presents are all old creationist canards, long deconstructed by scientists. In fact I address many of them in my original refutation. Creationists generally are not very original – they recycle old arguments endlessly, regardless of how many times they have been destroyed.
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  • Morris also makes heavy use of the “taking a quote out of context” strategy favored by creationists. His quotes are often from secondary sources and are incomplete.
  • A more scholarly (i.e. intellectually honest) approach would be to cite actual evidence to support a point. If you are going to cite an authority, then make sure the quote is relevant, in context, and complete.
  • And even better, cite a number of sources to show that the opinion is representative. Rather we get single, partial, and often outdated quotes without context.
  • (nature is not, it turns out, cleanly divided into “kinds”, which have no operational definition). He also repeats this canard: Such variation is often called microevolution, and these minor horizontal (or downward) changes occur fairly often, but such changes are not true “vertical” evolution. This is the microevolution/macroevolution false dichotomy. It is only “often called” this by creationists – not by actual evolutionary scientists. There is no theoretical or empirical division between macro and micro evolution. There is just evolution, which can result in the full spectrum of change from minor tweaks to major changes.
  • Morris wonders why there are no “dats” – dog-cat transitional species. He misses the hierarchical nature of evolution. As evolution proceeds, and creatures develop a greater and greater evolutionary history behind them, they increasingly are committed to their body plan. This results in a nestled hierarchy of groups – which is reflected in taxonomy (the naming scheme of living things).
  • once our distant ancestors developed the basic body plan of chordates, they were committed to that body plan. Subsequent evolution resulted in variations on that plan, each of which then developed further variations, etc. But evolution cannot go backward, undo evolutionary changes and then proceed down a different path. Once an evolutionary line has developed into a dog, evolution can produce variations on the dog, but it cannot go backwards and produce a cat.
  • Stephen J. Gould described this distinction as the difference between disparity and diversity. Disparity (the degree of morphological difference) actually decreases over evolutionary time, as lineages go extinct and the surviving lineages are committed to fewer and fewer basic body plans. Meanwhile, diversity (the number of variations on a body plan) within groups tends to increase over time.
  • the kind of evolutionary changes that were happening in the past, when species were relatively undifferentiated (compared to contemporary species) is indeed not happening today. Modern multi-cellular life has 600 million years of evolutionary history constraining their future evolution – which was not true of species at the base of the evolutionary tree. But modern species are indeed still evolving.
  • Here is a list of research documenting observed instances of speciation. The list is from 1995, and there are more recent examples to add to the list. Here are some more. And here is a good list with references of more recent cases.
  • Next Morris tries to convince the reader that there is no evidence for evolution in the past, focusing on the fossil record. He repeats the false claim (again, which I already dealt with) that there are no transitional fossils: Even those who believe in rapid evolution recognize that a considerable number of generations would be required for one distinct “kind” to evolve into another more complex kind. There ought, therefore, to be a considerable number of true transitional structures preserved in the fossils — after all, there are billions of non-transitional structures there! But (with the exception of a few very doubtful creatures such as the controversial feathered dinosaurs and the alleged walking whales), they are not there.
  • I deal with this question at length here, pointing out that there are numerous transitional fossils for the evolution of terrestrial vertebrates, mammals, whales, birds, turtles, and yes – humans from ape ancestors. There are many more examples, these are just some of my favorites.
  • Much of what follows (as you can see it takes far more space to correct the lies and distortions of Morris than it did to create them) is classic denialism – misinterpreting the state of the science, and confusing lack of information about the details of evolution with lack of confidence in the fact of evolution. Here are some examples – he quotes Niles Eldridge: “It is a simple ineluctable truth that virtually all members of a biota remain basically stable, with minor fluctuations, throughout their durations. . . .“ So how do evolutionists arrive at their evolutionary trees from fossils of organisms which didn’t change during their durations? Beware the “….” – that means that meaningful parts of the quote are being omitted. I happen to have the book (The Pattern of Evolution) from which Morris mined that particular quote. Here’s the rest of it: (Remember, by “biota” we mean the commonly preserved plants and animals of a particular geological interval, which occupy regions often as large as Roger Tory Peterson’s “eastern” region of North American birds.) And when these systems change – when the older species disappear, and new ones take their place – the change happens relatively abruptly and in lockstep fashion.”
  • Eldridge was one of the authors (with Gould) of punctuated equilibrium theory. This states that, if you look at the fossil record, what we see are species emerging, persisting with little change for a while, and then disappearing from the fossil record. They theorize that most species most of the time are at equilibrium with their environment, and so do not change much. But these periods of equilibrium are punctuated by disequilibrium – periods of change when species will have to migrate, evolve, or go extinct.
  • This does not mean that speciation does not take place. And if you look at the fossil record we see a pattern of descendant species emerging from ancestor species over time – in a nice evolutionary pattern. Morris gives a complete misrepresentation of Eldridge’s point – once again we see intellectual dishonesty in his methods of an astounding degree.
  • Regarding the atheism = religion comment, it reminds me of a great analogy that I first heard on twitter from Evil Eye. (paraphrase) “those that say atheism is a religion, is like saying ‘not collecting stamps’ is a hobby too.”
  • Morris next tackles the genetic evidence, writing: More often is the argument used that similar DNA structures in two different organisms proves common evolutionary ancestry. Neither argument is valid. There is no reason whatever why the Creator could not or would not use the same type of genetic code based on DNA for all His created life forms. This is evidence for intelligent design and creation, not evolution.
  • Here is an excellent summary of the multiple lines of molecular evidence for evolution. Basically, if we look at the sequence of DNA, the variations in trinucleotide codes for amino acids, and amino acids for proteins, and transposons within DNA we see a pattern that can only be explained by evolution (or a mischievous god who chose, for some reason, to make life look exactly as if it had evolved – a non-falsifiable notion).
  • The genetic code is essentially comprised of four letters (ACGT for DNA), and every triplet of three letters equates to a specific amino acid. There are 64 (4^3) possible three letter combinations, and 20 amino acids. A few combinations are used for housekeeping, like a code to indicate where a gene stops, but the rest code for amino acids. There are more combinations than amino acids, so most amino acids are coded for by multiple combinations. This means that a mutation that results in a one-letter change might alter from one code for a particular amino acid to another code for the same amino acid. This is called a silent mutation because it does not result in any change in the resulting protein.
  • It also means that there are very many possible codes for any individual protein. The question is – which codes out of the gazillions of possible codes do we find for each type of protein in different species. If each “kind” were created separately there would not need to be any relationship. Each kind could have it’s own variation, or they could all be identical if they were essentially copied (plus any mutations accruing since creation, which would be minimal). But if life evolved then we would expect that the exact sequence of DNA code would be similar in related species, but progressively different (through silent mutations) over evolutionary time.
  • This is precisely what we find – in every protein we have examined. This pattern is necessary if evolution were true. It cannot be explained by random chance (the probability is absurdly tiny – essentially zero). And it makes no sense from a creationist perspective. This same pattern (a branching hierarchy) emerges when we look at amino acid substitutions in proteins and other aspects of the genetic code.
  • Morris goes for the second law of thermodynamics again – in the exact way that I already addressed. He responds to scientists correctly pointing out that the Earth is an open system, by writing: This naive response to the entropy law is typical of evolutionary dissimulation. While it is true that local order can increase in an open system if certain conditions are met, the fact is that evolution does not meet those conditions. Simply saying that the earth is open to the energy from the sun says nothing about how that raw solar heat is converted into increased complexity in any system, open or closed. The fact is that the best known and most fundamental equation of thermodynamics says that the influx of heat into an open system will increase the entropy of that system, not decrease it. All known cases of decreased entropy (or increased organization) in open systems involve a guiding program of some sort and one or more energy conversion mechanisms.
  • Energy has to be transformed into a usable form in order to do the work necessary to decrease entropy. That’s right. That work is done by life. Plants take solar energy (again – I’m not sure what “raw solar heat” means) and convert it into food. That food fuels the processes of life, which include development and reproduction. Evolution emerges from those processes- therefore the conditions that Morris speaks of are met.
  • But Morris next makes a very confused argument: Evolution has neither of these. Mutations are not “organizing” mechanisms, but disorganizing (in accord with the second law). They are commonly harmful, sometimes neutral, but never beneficial (at least as far as observed mutations are concerned). Natural selection cannot generate order, but can only “sieve out” the disorganizing mutations presented to it, thereby conserving the existing order, but never generating new order.
  • The notion that evolution (as if it’s a thing) needs to use energy is hopelessly confused. Evolution is a process that emerges from the system of life – and life certainly can use solar energy to decrease its entropy, and by extension the entropy of the biosphere. Morris slips into what is often presented as an information argument.  (Yet again – already dealt with. The pattern here is that we are seeing a shuffling around of the same tired creationists arguments.) It is first not true that most mutations are harmful. Many are silent, and many of those that are not silent are not harmful. They may be neutral, they may be a mixed blessing, and their relative benefit vs harm is likely to be situational. They may be fatal. And they also may be simply beneficial.
  • Morris finishes with a long rambling argument that evolution is religion. Evolution is promoted by its practitioners as more than mere science. Evolution is promulgated as an ideology, a secular religion — a full-fledged alternative to Christianity, with meaning and morality . . . . Evolution is a religion. This was true of evolution in the beginning, and it is true of evolution still today. Morris ties evolution to atheism, which, he argues, makes it a religion. This assumes, of course, that atheism is a religion. That depends on how you define atheism and how you define religion – but it is mostly wrong. Atheism is a lack of belief in one particular supernatural claim – that does not qualify it as a religion.
  • But mutations are not “disorganizing” – that does not even make sense. It seems to be based on a purely creationist notion that species are in some privileged perfect state, and any mutation can only take them farther from that perfection. For those who actually understand biology, life is a kluge of compromises and variation. Mutations are mostly lateral moves from one chaotic state to another. They are not directional. But they do provide raw material, variation, for natural selection. Natural selection cannot generate variation, but it can select among that variation to provide differential survival. This is an old game played by creationists – mutations are not selective, and natural selection is not creative (does not increase variation). These are true but irrelevant, because mutations increase variation and information, and selection is a creative force that results in the differential survival of better adapted variation.
  • Weiye Loh on 01 Mar 11
     
    One of my earlier posts on SkepticBlog was Ten Major Flaws in Evolution: A Refutation, published two years ago. Occasionally a creationist shows up to snipe at the post, like this one:i read this and found it funny. It supposedly gives a scientific refutation, but it is full of more bias than fox news, and a lot of emotion as well.here's a scientific case by an actual scientists, you know, one with a ph. D, and he uses statements by some of your favorite evolutionary scientists to insist evolution doesn't exist.i challenge you to write a refutation on this one.http://www.icr.org/home/resources/resources_tracts_scientificcaseagainstevolution/Challenge accepted.
Weiye Loh

Can a group of scientists in California end the war on climate change? | Science | The ... - 0 views

www.guardian.co.uk/...entists-end-climate-change-war

Climate Science Academic Research Data Mining Data Open Source Funding ClimateGate Polarisation Statistics

shared by Weiye Loh on 01 Mar 11 - No Cached
  • Muller calls his latest obsession the Berkeley Earth project. The aim is so simple that the complexity and magnitude of the undertaking is easy to miss. Starting from scratch, with new computer tools and more data than has ever been used, they will arrive at an independent assessment of global warming. The team will also make every piece of data it uses – 1.6bn data points – freely available on a website. It will post its workings alongside, including full information on how more than 100 years of data from thousands of instruments around the world are stitched together to give a historic record of the planet's temperature.
  • Muller is fed up with the politicised row that all too often engulfs climate science. By laying all its data and workings out in the open, where they can be checked and challenged by anyone, the Berkeley team hopes to achieve something remarkable: a broader consensus on global warming. In no other field would Muller's dream seem so ambitious, or perhaps, so naive.
  • "We are bringing the spirit of science back to a subject that has become too argumentative and too contentious," Muller says, over a cup of tea. "We are an independent, non-political, non-partisan group. We will gather the data, do the analysis, present the results and make all of it available. There will be no spin, whatever we find." Why does Muller feel compelled to shake up the world of climate change? "We are doing this because it is the most important project in the world today. Nothing else comes close," he says.
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  • There are already three heavyweight groups that could be considered the official keepers of the world's climate data. Each publishes its own figures that feed into the UN's Intergovernmental Panel on Climate Change. Nasa's Goddard Institute for Space Studies in New York City produces a rolling estimate of the world's warming. A separate assessment comes from another US agency, the National Oceanic and Atmospheric Administration (Noaa). The third group is based in the UK and led by the Met Office. They all take readings from instruments around the world to come up with a rolling record of the Earth's mean surface temperature. The numbers differ because each group uses its own dataset and does its own analysis, but they show a similar trend. Since pre-industrial times, all point to a warming of around 0.75C.
  • You might think three groups was enough, but Muller rolls out a list of shortcomings, some real, some perceived, that he suspects might undermine public confidence in global warming records. For a start, he says, warming trends are not based on all the available temperature records. The data that is used is filtered and might not be as representative as it could be. He also cites a poor history of transparency in climate science, though others argue many climate records and the tools to analyse them have been public for years.
  • Then there is the fiasco of 2009 that saw roughly 1,000 emails from a server at the University of East Anglia's Climatic Research Unit (CRU) find their way on to the internet. The fuss over the messages, inevitably dubbed Climategate, gave Muller's nascent project added impetus. Climate sceptics had already attacked James Hansen, head of the Nasa group, for making political statements on climate change while maintaining his role as an objective scientist. The Climategate emails fuelled their protests. "With CRU's credibility undergoing a severe test, it was all the more important to have a new team jump in, do the analysis fresh and address all of the legitimate issues raised by sceptics," says Muller.
  • This latest point is where Muller faces his most delicate challenge. To concede that climate sceptics raise fair criticisms means acknowledging that scientists and government agencies have got things wrong, or at least could do better. But the debate around global warming is so highly charged that open discussion, which science requires, can be difficult to hold in public. At worst, criticising poor climate science can be taken as an attack on science itself, a knee-jerk reaction that has unhealthy consequences. "Scientists will jump to the defence of alarmists because they don't recognise that the alarmists are exaggerating," Muller says.
  • The Berkeley Earth project came together more than a year ago, when Muller rang David Brillinger, a statistics professor at Berkeley and the man Nasa called when it wanted someone to check its risk estimates of space debris smashing into the International Space Station. He wanted Brillinger to oversee every stage of the project. Brillinger accepted straight away. Since the first meeting he has advised the scientists on how best to analyse their data and what pitfalls to avoid. "You can think of statisticians as the keepers of the scientific method, " Brillinger told me. "Can scientists and doctors reasonably draw the conclusions they are setting down? That's what we're here for."
  • For the rest of the team, Muller says he picked scientists known for original thinking. One is Saul Perlmutter, the Berkeley physicist who found evidence that the universe is expanding at an ever faster rate, courtesy of mysterious "dark energy" that pushes against gravity. Another is Art Rosenfeld, the last student of the legendary Manhattan Project physicist Enrico Fermi, and something of a legend himself in energy research. Then there is Robert Jacobsen, a Berkeley physicist who is an expert on giant datasets; and Judith Curry, a climatologist at Georgia Institute of Technology, who has raised concerns over tribalism and hubris in climate science.
  • Robert Rohde, a young physicist who left Berkeley with a PhD last year, does most of the hard work. He has written software that trawls public databases, themselves the product of years of painstaking work, for global temperature records. These are compiled, de-duplicated and merged into one huge historical temperature record. The data, by all accounts, are a mess. There are 16 separate datasets in 14 different formats and they overlap, but not completely. Muller likens Rohde's achievement to Hercules's enormous task of cleaning the Augean stables.
  • The wealth of data Rohde has collected so far – and some dates back to the 1700s – makes for what Muller believes is the most complete historical record of land temperatures ever compiled. It will, of itself, Muller claims, be a priceless resource for anyone who wishes to study climate change. So far, Rohde has gathered records from 39,340 individual stations worldwide.
  • Publishing an extensive set of temperature records is the first goal of Muller's project. The second is to turn this vast haul of data into an assessment on global warming.
  • The big three groups – Nasa, Noaa and the Met Office – work out global warming trends by placing an imaginary grid over the planet and averaging temperatures records in each square. So for a given month, all the records in England and Wales might be averaged out to give one number. Muller's team will take temperature records from individual stations and weight them according to how reliable they are.
  • This is where the Berkeley group faces its toughest task by far and it will be judged on how well it deals with it. There are errors running through global warming data that arise from the simple fact that the global network of temperature stations was never designed or maintained to monitor climate change. The network grew in a piecemeal fashion, starting with temperature stations installed here and there, usually to record local weather.
  • Among the trickiest errors to deal with are so-called systematic biases, which skew temperature measurements in fiendishly complex ways. Stations get moved around, replaced with newer models, or swapped for instruments that record in celsius instead of fahrenheit. The times measurements are taken varies, from say 6am to 9pm. The accuracy of individual stations drift over time and even changes in the surroundings, such as growing trees, can shield a station more from wind and sun one year to the next. Each of these interferes with a station's temperature measurements, perhaps making it read too cold, or too hot. And these errors combine and build up.
  • This is the real mess that will take a Herculean effort to clean up. The Berkeley Earth team is using algorithms that automatically correct for some of the errors, a strategy Muller favours because it doesn't rely on human interference. When the team publishes its results, this is where the scrutiny will be most intense.
  • Despite the scale of the task, and the fact that world-class scientific organisations have been wrestling with it for decades, Muller is convinced his approach will lead to a better assessment of how much the world is warming. "I've told the team I don't know if global warming is more or less than we hear, but I do believe we can get a more precise number, and we can do it in a way that will cool the arguments over climate change, if nothing else," says Muller. "Science has its weaknesses and it doesn't have a stranglehold on the truth, but it has a way of approaching technical issues that is a closer approximation of truth than any other method we have."
  • It might not be a good sign that one prominent climate sceptic contacted by the Guardian, Canadian economist Ross McKitrick, had never heard of the project. Another, Stephen McIntyre, whom Muller has defended on some issues, hasn't followed the project either, but said "anything that [Muller] does will be well done". Phil Jones at the University of East Anglia was unclear on the details of the Berkeley project and didn't comment.
  • Elsewhere, Muller has qualified support from some of the biggest names in the business. At Nasa, Hansen welcomed the project, but warned against over-emphasising what he expects to be the minor differences between Berkeley's global warming assessment and those from the other groups. "We have enough trouble communicating with the public already," Hansen says. At the Met Office, Peter Stott, head of climate monitoring and attribution, was in favour of the project if it was open and peer-reviewed.
  • Peter Thorne, who left the Met Office's Hadley Centre last year to join the Co-operative Institute for Climate and Satellites in North Carolina, is enthusiastic about the Berkeley project but raises an eyebrow at some of Muller's claims. The Berkeley group will not be the first to put its data and tools online, he says. Teams at Nasa and Noaa have been doing this for many years. And while Muller may have more data, they add little real value, Thorne says. Most are records from stations installed from the 1950s onwards, and then only in a few regions, such as North America. "Do you really need 20 stations in one region to get a monthly temperature figure? The answer is no. Supersaturating your coverage doesn't give you much more bang for your buck," he says. They will, however, help researchers spot short-term regional variations in climate change, something that is likely to be valuable as climate change takes hold.
  • Despite his reservations, Thorne says climate science stands to benefit from Muller's project. "We need groups like Berkeley stepping up to the plate and taking this challenge on, because it's the only way we're going to move forwards. I wish there were 10 other groups doing this," he says.
  • Muller's project is organised under the auspices of Novim, a Santa Barbara-based non-profit organisation that uses science to find answers to the most pressing issues facing society and to publish them "without advocacy or agenda". Funding has come from a variety of places, including the Fund for Innovative Climate and Energy Research (funded by Bill Gates), and the Department of Energy's Lawrence Berkeley Lab. One donor has had some climate bloggers up in arms: the man behind the Charles G Koch Charitable Foundation owns, with his brother David, Koch Industries, a company Greenpeace called a "kingpin of climate science denial". On this point, Muller says the project has taken money from right and left alike.
  • No one who spoke to the Guardian about the Berkeley Earth project believed it would shake the faith of the minority who have set their minds against global warming. "As new kids on the block, I think they will be given a favourable view by people, but I don't think it will fundamentally change people's minds," says Thorne. Brillinger has reservations too. "There are people you are never going to change. They have their beliefs and they're not going to back away from them."
Weiye Loh

Real Climate faces libel suit | Environment | guardian.co.uk - 0 views

www.guardian.co.uk/...real-climate-libel-threat

Libel Climate Science Academic Journal Academic Research Social Social Media

shared by Weiye Loh on 26 Feb 11 - No Cached
  • Gavin Schmidt, a climate modeller and Real Climate member based at Nasa's Goddard Institute for Space Studies in New York, has claimed that Energy & Environment (E&E) has "effectively dispensed with substantive peer review for any papers that follow the editor's political line." The journal denies the claim, and, according to Schmidt, has threatened to take further action unless he retracts it.
  • Every paper that is submitted to the journal is vetted by a number of experts, she said. But she did not deny that she allows her political agenda to influence which papers are published in the journal. "I'm not ashamed to say that I deliberately encourage the publication of papers that are sceptical of climate change," said Boehmer-Christiansen, who does not believe in man-made climate change.
  • Simon Singh, a science writer who last year won a major libel battle with the British Chiropractic Association (BCA), said: "A libel threat is potentially catastrophic. It can lead to a journalist going bankrupt or a blogger losing his house. A lot of journalists and scientists will understandably react to the threat of libel by retracting their articles, even if they are confident they are correct. So I'm delighted that Gavin Schmidt is going to stand up for what he has written." During the case with the BCA, Singh also received a libel threat in response to an article he had written about climate change, but Singh stood by what he had written and threat was not carried through.
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  • Schmidt has refused to retract his comments and maintains that the majority of papers published in the journal are "dross"."I would personally not credit any article that was published there with any useful contribution to the science," he told the Guardian. "Saying a paper was published in E&E has become akin to immediately discrediting it." He also describes the journal as a "backwater" of poorly presented and incoherent contributions that "anyone who has done any science can see are fundamentally flawed from the get-go."
  • Schmidt points to an E&E paper that claimed that the Sun is made of iron. "The editor sent it out for review, where it got trashed (as it should have been), and [Boehmer-Christiansen] published it anyway," he says.
  • The journal also published a much-maligned analysis suggesting that levels of the greenhouse gas carbon dioxide could go up and down by 100 parts per million in a year or two, prompting marine biologist Ralph Keeling at the Scripps Institute of Oceanography in La Jolla, California to write a response to the journal, in which he asked: "Is it really the intent of E&E to provide a forum for laundering pseudo-science?"
  • Schmidt and Keeling are not alone in their criticisms. Roger Pielke Jr, a professor of environmental studies at the University of Colorado, said he regrets publishing a paper in the journal in 2000 – one year after it was established and before he had time to realise that it was about to become a fringe platform for climate sceptics. "[E&E] has published a number of low-quality papers, and the editor's political agenda has clearly undermined the legitimacy of the outlet," Pielke says. "If I had a time machine I'd go back and submit our paper elsewhere."
  • Any paper published in E&E is now ignored by the broader scientific community, according to Pielke. "In some cases perhaps that is justified, but I would argue that it provided a convenient excuse to ignore our paper on that basis alone, and not on the merits of its analysis," he said. In the long run, Pielke is confident that good ideas will win out over bad ideas. "But without care to the legitimacy of our science institutions – including journals and peer review – that long run will be a little longer," he says.
  • she has no intention of changing the way she runs E&E – which is not listed on the ISI Journal Master list, an official list of academic journals – in response to his latest criticisms.
  • Schmidt is unsurprised. "You would need a new editor, new board of advisors, and a scrupulous adherence to real peer review, perhaps ... using an open review process," he said. "But this is very unlikely to happen since their entire raison d'être is political, not scientific."
Weiye Loh

Missing Micrograms Set a Standard on Edge - NYTimes.com - 0 views

www.nytimes.com/...13kilogram.html

Latour Pandora's Box International System Measurement

shared by Weiye Loh on 17 Mar 11 - No Cached
  • No one knows exactly why the international prototype of the kilogram, as pampered a hunk of platinum and iridium as ever existed, appears to weigh less than it did when it was manufactured in the late 19th century.
  • It is here that the kilogram — the universal standard against which all other kilograms are measured — resides in controlled conditions set out in 1889, in an underground vault that can be opened only with three different keys possessed by three different people. The change, discovered when the prototype was compared with its official copies, amounts only to some 50 micrograms, equal to the mass of a smallish grain of sand. But it shows that the prototype has fallen down on its primary job, to be a beacon of stability in a world of uncertainty.
  • scientists say, that it is time to find a new way to calculate the kilogram, which currently enjoys a delightfully frustrating definition: “a unit of mass equal to the mass of the international prototype of the kilogram.”
  • ...1 more annotation...
  • The idea would be to base the future kilogram on a fundamental physical constant, not an inconstant object, said Dr. Peter J. Mohr, a theoretical physicist at the National Institute of Standards and Technology in Gaithersburg, Md. “We want to have something that’s not changing, so that we can have a stable system of measurement,” he said.
Weiye Loh

Roger Pielke Jr.'s Blog: The Guardian on Difficult Energy Choices - 0 views

rogerpielkejr.blogspot.com/...-difficult-energy-choices.html

Green Energy Nuclear Energy

shared by Weiye Loh on 16 Mar 11 - No Cached
  • For all the emotive force of events in Japan, though, this is one issue where there is a pressing need to listen to what our heads say about the needs of the future, as opposed to subjecting ourselves to jittery whims of the heart. One of the few solid lessons to emerge from the aged Fukushima plant is that the tendency in Britain and elsewhere to postpone politically painful choices about building new nuclear stations by extending the life-spans of existing ones is dangerous. Beyond that, with or without Fukushima, the undisputed nastiness of nuclear – the costs, the risks and the waste – still need to be carefully weighed in the balance against the different poisons pumped out by coal, which remains the chief economic alternative. Most of the easy third ways are illusions. Energy efficiency has been improving for over 200 years, but it has worked to increase not curb demand. Off-shore wind remains so costly that market forces would simply push pollution overseas if it were taken up in a big way. A massive expansion of shale gas may yet pave the way to a plausible non-nuclear future, and it certainly warrants close examination. The fundamentals of the difficult decisions ahead, however, have not moved with the Earth.
  • Weiye Loh on 16 Mar 11
     
    The Guardian hits the right note on energy policy choices in the aftermath of the still unfolding Japanese nuclear crisis:
Weiye Loh

Open science: a future shaped by shared experience | Education | The Observer - 0 views

www.guardian.co.uk/...ience-shared-research-internet

Open Source Science

shared by Weiye Loh on 25 May 11 - No Cached
  • one day he took one of these – finding a mathematical proof about the properties of multidimensional objects – and put his thoughts on his blog. How would other people go about solving this conundrum? Would somebody else have any useful insights? Would mathematicians, notoriously competitive, be prepared to collaborate? "It was an experiment," he admits. "I thought it would be interesting to try."He called it the Polymath Project and it rapidly took on a life of its own. Within days, readers, including high-ranking academics, had chipped in vital pieces of information or new ideas. In just a few weeks, the number of contributors had reached more than 40 and a result was on the horizon. Since then, the joint effort has led to several papers published in journals under the collective pseudonym DHJ Polymath. It was an astonishing and unexpected result.
  • "If you set out to solve a problem, there's no guarantee you will succeed," says Gowers. "But different people have different aptitudes and they know different tricks… it turned out their combined efforts can be much quicker."
  • There are many interpretations of what open science means, with different motivations across different disciplines. Some are driven by the backlash against corporate-funded science, with its profit-driven research agenda. Others are internet radicals who take the "information wants to be free" slogan literally. Others want to make important discoveries more likely to happen. But for all their differences, the ambition remains roughly the same: to try and revolutionise the way research is performed by unlocking it and making it more public.
  • ...10 more annotations...
  • Jackson is a young bioscientist who, like many others, has discovered that the technologies used in genetics and molecular biology, once the preserve of only the most well-funded labs, are now cheap enough to allow experimental work to take place in their garages. For many, this means that they can conduct genetic experiments in a new way, adopting the so-called "hacker ethic" – the desire to tinker, deconstruct, rebuild.
  • The rise of this group is entertainingly documented in a new book by science writer Marcus Wohlsen, Biopunk (Current £18.99), which describes the parallels between today's generation of biological innovators and the rise of computer software pioneers of the 1980s and 1990s. Indeed, Bill Gates has said that if he were a teenager today, he would be working on biotechnology, not computer software.
  • open scientists suggest that it doesn't have to be that way. Their arguments are propelled by a number of different factors that are making transparency more viable than ever.The first and most powerful change has been the use of the web to connect people and collect information. The internet, now an indelible part of our lives, allows like-minded individuals to seek one another out and share vast amounts of raw data. Researchers can lay claim to an idea not by publishing first in a journal (a process that can take many months) but by sharing their work online in an instant.And while the rapidly decreasing cost of previously expensive technical procedures has opened up new directions for research, there is also increasing pressure for researchers to cut costs and deliver results. The economic crisis left many budgets in tatters and governments around the world are cutting back on investment in science as they try to balance the books. Open science can, sometimes, make the process faster and cheaper, showing what one advocate, Cameron Neylon, calls "an obligation and responsibility to the public purse".
  • "The litmus test of openness is whether you can have access to the data," says Dr Rufus Pollock, a co-founder of the Open Knowledge Foundation, a group that promotes broader access to information and data. "If you have access to the data, then anyone can get it, use it, reuse it and redistribute it… we've always built on the work of others, stood on the shoulders of giants and learned from those who have gone before."
  • moves are afoot to disrupt the closed world of academic journals and make high-level teaching materials available to the public. The Public Library of Science, based in San Francisco, is working to make journals more freely accessible
  • it's more than just politics at stake – it's also a fundamental right to share knowledge, rather than hide it. The best example of open science in action, he suggests, is the Human Genome Project, which successfully mapped our DNA and then made the data public. In doing so, it outflanked J Craig Venter's proprietary attempt to patent the human genome, opening up the very essence of human life for science, rather than handing our biological information over to corporate interests.
  • the rise of open science does not please everyone. Critics have argued that while it benefits those at either end of the scientific chain – the well-established at the top of the academic tree or the outsiders who have nothing to lose – it hurts those in the middle. Most professional scientists rely on the current system for funding and reputation. Others suggest it is throwing out some of the most important elements of science and making deep, long-term research more difficult.
  • Open science proponents say that they do not want to make the current system a thing of the past, but that it shouldn't be seen as immutable either. In fact, they say, the way most people conceive of science – as a highly specialised academic discipline conducted by white-coated professionals in universities or commercial laboratories – is a very modern construction.It is only over the last century that scientific disciplines became industrialised and compartmentalised.
  • open scientists say they don't want to throw scientists to the wolves: they just want to help answer questions that, in many cases, are seen as insurmountable.
  • "Some people, very straightforwardly, said that they didn't like the idea because it undermined the concept of the romantic, lone genius." Even the most dedicated open scientists understand that appeal. "I do plan to keep going at them," he says of collaborative projects. "But I haven't given up on solitary thinking about problems entirely."
Weiye Loh

Can We Kill Off This Myth That The Internet Is A Wild West That Needs To Be Tamed? | Te... - 0 views

www.techdirt.com/...t-that-needs-to-be-tamed.shtml

Internet Censorship Regulation

shared by Weiye Loh on 29 May 11 - No Cached
  • The latest version of this, is a horrible, dangerous and ridiculous editorial from Martin Kettle, at The Guardian, who insists that it's time to bring the internet "under control." Yet whatever one's qualms about Sarkozy and his plan, he is surely on to something that should not be so sweepingly dismissed. Looking at British politics this week, it is hard to make an intellectually serious case that internet regulation issues should not be raised. Not only has the balance between parliament, the courts and the media been made to look irrelevant over superinjunctions by the twitterati, but almost the first act of the new Scottish government on Thursday was to promise a clampdown on internet sectarian hate postings. The fact that Facebook's Mark Zuckerberg also popped up this week with the casual suggestion that children under 13 should be able to use social networking sites dramatically underlines the argument that there are issues of importance to discuss here.
  • on the issue of the superinjunction, it suggests the exact opposite of what Kettle is arguing. It's pointing out the ridiculousness of analog-era regulations in a digital age. That's not a case for controls. It's a case for removing controls.
  • issue of hate speech is another one where people overreact emotionally. The best way to counter hate speech (which is almost always ignorance) is with more speech. "Clamping down" only convinces those who hate that they're "onto something" and that they're being persecuted.
  • ...5 more annotations...
  • Zuckerberg's claim -- which he's already pointed out involved taking his words out of context -- was just that there could be socially useful reasons why younger people might be helped if they could have accounts, but over aggressive internet controls prevent that. Again, that seems to argue against control, not for it.
  • The internet does not exist as untouchable. Morality and the rule of law do apply to the actions people do there. The question is whether those laws are appropriate. In many cases, it appears they're not.
  • the fallacy is not that these laws are obsolete because they're difficult to enforce. It's that they're obsolete because many of them don't make any sense, such as these injunctions that seek to merely protect the rich and famous from having their own embarrassing actions discussed.
  • ome of these laws aren't "difficult" to enforce, they're impossible to enforce. And it's not because the internet is some "wild west," but because it's a very different platform of communication -- a many to many platform, which the world has not had before. We've had one-to-one and one-to-many forms of communication, but a many-to-many platform really does change some important fundamentals when it comes to speech. Far more important are the questions of internet access to unsuitable material, especially but not solely by children, as well as the danger to children from inadequately policed social media. Merely to write such a sentence is to invite outrage in some quarters, but these issues are all too easy for a society to ignore until they return to haunt us. And the proper response, if there is "unsuitable" (unsuitable to whom, by the way?) content is to go after those who produced and distributed it. Not to seek to block access and sweep it under the rug. That's denial. Let's live in reality.
  • Kettle talks about spam and pornography. Yet, I almost never see spam any more. Why? Because technologists came in and built filters. I never see pornography either. And not because of any laws or filters, but because the websites I surf don't display any, and contrary to the myth makers, it's pretty difficult to "accidentally" run into porn. I do a lot of surfing and can't recall ever accidentally coming across any.
Weiye Loh

Freakonomics » How Advancements in Neuroscience Will Influence the Law - 0 views

www.freakonomics.com/...science-will-influence-the-law

Neuroscience Law

shared by Weiye Loh on 01 Jun 11 - No Cached
  • as new technologies emerge to better reveal people’s experiences, the law ought to do more to take these experiences into account. In tort and criminal law, we often ignore or downplay the importance of subjective experience. This is no surprise. During the hundreds of years in which these bodies of law developed, we had very poor methods of making inferences about the experiences of others. As we get better at measuring experiences, however, I make the normative claim that we ought to change fundamental aspects of the law to take better account of people’s experiences.
  • Researchers are trying to develop more accurate methods of detecting deception using brain imaging.    While many in the scientific community doubt that current brain-based methods of lie detection are sufficiently accurate and reliable to use in forensic contexts, that has stopped neither companies from marketing fMRI lie detection services to the public, nor litigants from trying to introduce such evidence in court.
  • Given the substantial possibility that we will develop reasonably accurate lie detectors within the next thirty years, our current secretive behaviors have already become harder to hide.
  • Weiye Loh on 01 Jun 11
     
    A new article published in the Emory Law Journal (full version here) entitled "The Experiential Future of the Law," by Brooklyn Law School professor Adam Kolber, looks at how these advancements will continue over the next 30 years (to the point of near mind-reading), and how they'll inevitably lead to changes in the law.
Weiye Loh

Maria Popova: In a new world of informational abundance, content curation is ... - 0 views

www.niemanlab.org/...on-is-a-new-kind-of-authorship

Content Curation Crowd Curation Social Media

shared by Weiye Loh on 12 Jun 11 - No Cached
  • When it comes to this curatorial, directional model of Twitter as a discovery mechanism, applying the conventions of speech or text to it is largely moot.
Weiye Loh

Roger Pielke Jr.'s Blog: Faith-Based Education and a Return to Shop Class - 0 views

rogerpielkejr.blogspot.com/...d-education-and-return-to.html

Technology Education ICT

shared by Weiye Loh on 04 Sep 11 - No Cached
  • In the United States, nearly a half century of research, application of new technologies and development of new methods and policies has failed to translate into improved reading abilities for the nation’s children1.
  • the reasons why progress has been so uneven point to three simple rules for anticipating when more research and development (R&D) could help to yield rapid social progress. In a world of limited resources, the trick is distinguishing problems amenable to technological fixes from those that are not. Our rules provide guidance\ in making this distinction . . .
  • unlike vaccines, the textbooks and software used in education do not embody the essence of what needs to be done. That is, they don’t provide the basic ‘go’ of teaching and learning. That depends on the skills of teachers and on the attributes of classrooms and students. Most importantly, the effectiveness of a vaccine is largely independent of who gives or receives it, and of the setting in which it is given.
  • ...5 more annotations...
  • The three rules for a technological fix proposed by Sarewitz and Nelson are: I. The technology must largely embody the cause–effect relationship connecting problem to solution. II. The effects of the technological fix must be assessable using relatively unambiguous or uncontroversial criteria. III. Research and development is most likely to contribute decisively to solving a social problem when it focuses on improving a standardized technical core that already exists.
  • technology in the classroom fails with respect to each of the three criteria: (a) technology is not a causal factor in learning in the sense that more technology means more learning, (b) assessment of educational outcome sis itself difficult and contested, much less disentangling various causal factors, and (c) the lack of evidence that technology leads to improved educational outcomes means that there is no such standardized technological core.
  • This conundrum calls into question one of the most significant contemporary educational movements. Advocates for giving schools a major technological upgrade — which include powerful educators, Silicon Valley titans and White House appointees — say digital devices let students learn at their own pace, teach skills needed in a modern economy and hold the attention of a generation weaned on gadgets. Some backers of this idea say standardized tests, the most widely used measure of student performance, don’t capture the breadth of skills that computers can help develop. But they also concede that for now there is no better way to gauge the educational value of expensive technology investments.
  • absent clear proof, schools are being motivated by a blind faith in technology and an overemphasis on digital skills — like using PowerPoint and multimedia tools — at the expense of math, reading and writing fundamentals. They say the technology advocates have it backward when they press to upgrade first and ask questions later.
  • [D]emand for educated labour is being reconfigured by technology, in much the same way that the demand for agricultural labour was reconfigured in the 19th century and that for factory labour in the 20th. Computers can not only perform repetitive mental tasks much faster than human beings. They can also empower amateurs to do what professionals once did: why hire a flesh-and-blood accountant to complete your tax return when Turbotax (a software package) will do the job at a fraction of the cost? And the variety of jobs that computers can do is multiplying as programmers teach them to deal with tone and linguistic ambiguity. Several economists, including Paul Krugman, have begun to argue that post-industrial societies will be characterised not by a relentless rise in demand for the educated but by a great “hollowing out”, as mid-level jobs are destroyed by smart machines and high-level job growth slows. David Autor, of the Massachusetts Institute of Technology (MIT), points out that the main effect of automation in the computer era is not that it destroys blue-collar jobs but that it destroys any job that can be reduced to a routine. Alan Blinder, of Princeton University, argues that the jobs graduates have traditionally performed are if anything more “offshorable” than low-wage ones. A plumber or lorry-driver’s job cannot be outsourced to India.
  • Weiye Loh on 04 Sep 11
     
    In 2008 Dick Nelson and Dan Sarewitz had a commentary in Nature (here in PDF) that eloquently summarized why it is that we should not expect technology in the classroom to reault in better educational outcomes as they suggest we should in the case of a tehcnology like vaccines
Weiye Loh

flaneurose: The KK Chemo Misdosage Incident - 0 views

flaneurose.blogspot.com/...-chemo-misdosage-incident.html

Medicine Technology Design Capitalism

shared by Weiye Loh on 19 Nov 09 - Cached
  • Labelling the pump that dispenses in ml/hr in a different color from the pump that dispenses in ml/day would be an obvious remedy that would have addressed the KK incident. It's the common-sensical solution that anyone can think of.
  • Sometimes, design flaws like that really do occur because engineers can't see the wood for the trees.
  • But sometimes the team is aware of these issues and highlights them to management, but the manufacturer still proceeds as before. Why is that? Because in addition to design principles, one must be mindful that there are always business considerations at play as well. Manufacturing two (or more) separate designs for pumps incurs greater costs, eliminates the ability to standardize across pumps, increases holding inventory, and overall increases complexity of business and manufacturing processes, and decreases economies of scale. All this naturally reduces profitability.It's not just pumps. Even medicines are typically sold in identical-looking vials with identically colored vial caps, with only the text on the vial labels differentiating them in both drug type and concentration. You can imagine what kinds of accidents can potentially happen there.
  • ...2 more annotations...
  • Legally, the manufacturer has clearly labelled on the pump (in text) the appropriate dosing regime, or for a medicine vial, the type of drug and concentration. The manufacturer has hence fulfilled its duty. Therefore, if there are any mistakes in dosing, the liability for the error lies with the hospital and not the manufacturer of the product. The victim of such a dosing error can be said to be an "externalized cost"; the beneficiaries of the victim's suffering are the manufacturer, who enjoys greater profitability, the hospital, which enjoys greater cost-savings, and the public, who save on healthcare. Is it ethical of the manufacturer, to "pass on" liability to the hospital? To make it difficult (or at least not easy) for the hospital to administer the right dosage? Maybe the manufacturer is at fault, but IMHO, it's very hard to say.
  • When a chemo incident like the one that happened in KK occurs, there are cries of public remonstration, and the pendulum may swing the other way. Hospitals might make the decision to purchase more expensive and better designed pumps (that is, if they are available). Then years down the road, when a bureaucrat (or a management consultant) with an eye to trim costs looks through the hospital purchasing orders, they may make the suggestion that $XXX could be saved by buying the generic version of such-and-such a product, instead of the more expensive version. And they would not be wrong, just...myopic.Then the cycle starts again.Sometimes it's not only about human factors. It could be about policy, or human nature, or business fundamentals, or just the plain old, dysfunctional way the world works.
    • Weiye Loh
      Weiye Loh on 19 Nov 09
       
      Interesting article. Explains clearly why our 'ethical' considerations is always only limited to a particular context and specific considerations. 
Weiye Loh

Rationally Speaking: Don't blame free speech for the murders in Afghanistan - 0 views

rationallyspeaking.blogspot.com/...ree-speech-for-murders-in.html

Islam Religion Murder Freedom of Speech

shared by Weiye Loh on 08 Apr 11 - No Cached
  • The most disturbing example of this response came from the head of the U.N. Assistance Mission in Afghanistan, Staffan de Mistura, who said, “I don't think we should be blaming any Afghan. We should be blaming the person who produced the news — the one who burned the Koran. Freedom of speech does not mean freedom of offending culture, religion, traditions.” I was not going to comment on this monumentally inane line of thought, especially since Susan Jacoby, Michael Tomasky, and Mike Labossiere have already done such a marvelous job of it. But then I discovered, to my shock, that several of my liberal, progressive American friends actually agreed that Jones has some sort of legal and moral responsibility for what happened in Afghanistan
  • I believe he has neither. Here is why. Unlike many countries in the Middle East and Europe that punish blasphemy by fine, jail or death, the U.S., via the First Amendment and a history of court decisions, strongly protects freedom of speech and expression as basic and fundamental human rights. These include critiquing and offending other citizens’ culture, religion, and traditions. Such rights are not supposed to be swayed by peoples' subjective feelings, which form an incoherent and arbitrary basis for lawmaking. In a free society, if and when a person is offended by an argument or act, he or she has every right to argue and act back. If a person commits murder, the answer is not to limit the right; the answer is to condemn and punish the murderer for overreacting.
  • Of course, there are exceptions to this rule. Governments have an interest in condemning certain speech that provokes immediate hatred of or violence against people. The canonical example is yelling “fire!” in a packed room when there in fact is no fire, since this creates a clear and imminent danger for those inside the room. But Jones did not create such an environment, nor did he intend to. Jones (more precisely, Wayne Sapp) merely burned a book in a private ceremony in protest of its contents. Indeed, the connection between Jones and the murders requires many links in-between. The mob didn’t kill those accountable, or even Americans.
  • ...3 more annotations...
  • But even if there is no law prohibiting Jones’ action, isn’t he morally to blame for creating the environment that led to the murders? Didn’t he know Muslims would riot, and people might die? It seems ridiculous to assume that Jones could know such a thing, even if parts of the Muslim world have a poor track record in this area. But imagine for a moment that Jones did know Muslims would riot, and people would die. This does not make the act of burning a book and the act of murder morally equivalent, nor does it make the book burner responsible for reactions to his act. In and of itself, burning a book is a morally neutral act. Why would this change because some misguided individuals think book burning is worth the death penalty? And why is it that so many have automatically assumed the reaction to be respectable? To use an example nearer to some of us, recall when PZ Myers desecrated a communion wafer. If some Christian was offended, and went on to murder the closest atheist, would we really blame Myers? Is Myers' offense any different than Jones’?
  • the deep-seated belief among many that blasphemy is wrong. This means any reaction to blasphemy is less wrong, and perhaps even excused, compared to the blasphemous offense. Even President Obama said that, "The desecration of any holy text, including the Koran, is an act of extreme intolerance and bigotry.” To be sure, Obama went on to denounce the murders, and to state that burning a holy book is no excuse for murder. But Obama apparently couldn’t condemn the murders without also condemning Jones’ act of religious defiance.
  • As it turns out, this attitude is exactly what created the environment that led to murders in the first place. The members of the mob believed that religious belief should be free from public critical inquiry, and that a person who offends religious believers should face punishment. In the absence of official prosecution, they took matters into their own hands and sought anyone on the side of the offender. It didn’t help that Afghan leaders stoked the flames of hatred — but they only did so because they agreed with the mob’s sentiment to begin with. Afghan President Hamid Karzai said the U.S. should punish those responsible, and three well-known Afghan mullahs urged their followers to take to the streets and protest to call for the arrest of Jones
Weiye Loh

Chickens are capable of feeling empathy, scientists believe - Telegraph - 0 views

www.telegraph.co.uk/...mpathy-scientists-believe.html

Animal Rights Emotion Science

shared by Weiye Loh on 20 Apr 11 - No Cached
  • When chicks were exposed to puffs of air, they showed signs of distress that were mirrored by their mothers. The hens' heart rate increased, their eye temperature lowered - a recognised stress sign - and they became increasingly alert. Levels of preening were reduced, and the hens made more clucking noises directed at their chicks.
  • Researcher Jo Edgar, from the School of Veterinary Sciences at the University of Bristol, said: ''The extent to which animals are affected by the distress of others is of high relevance to the welfare of farm and laboratory animals. ''Our research has addressed the fundamental question of whether birds have the capacity to show empathic responses.
  • Weiye Loh on 20 Apr 11
     
    Domestic chickens display signs of empathy, the ability to ''feel another's pain'' that is at the heart of compassion, a study has found.
Weiye Loh

Roger Pielke Jr.'s Blog: Analysis of the Nisbet Report -- Part II, Political Views of S... - 0 views

rogerpielkejr.blogspot.com/...-of-nisbet-report-part-ii.html

Science Politics Conservative Liberal Ideological Affiliation Data

shared by Weiye Loh on 24 Apr 11 - No Cached
  • One part of Matthew Nisbet's recent report that has received very little attention is its comparative analysis of ideological and partisan perspectives of members of the American Association for the Advancement of Science. Nisbet shows that AAAS members are extremely partisan and ideological.  The word "extremely" is mine, and what do I mean by it?  Look at the figure above:  AAAS members are more partisan than MSNBC viewers and even Tea Party members.  AAAS members are more ideological than evangelical churchgoers but less so than Fox News viewers.  In both cases AAAS members are very different than the public as a whole.
  • Dan Sarewitz has discussed the problems with the ideological and partisan likemindedness of our scientific community, which has been exploited and reenforced in political debates: During the Bush administration, Democrats discovered that they could score political points by accusing Bush of being anti-science. In the process, they seem to have convinced themselves that they are the keepers of the Enlightenment spirit, and that those who disagree with them on issues like climate change are fundamentally irrational. Meanwhile, many Republicans have come to believe that mainstream science is corrupted by ideology and amounts to no more than politics by another name. Attracted to fringe scientists like the small and vocal group of climate skeptics, Republicans appear to be alienated from a mainstream scientific community that by and large doesn't share their political beliefs. The climate debacle is only the most conspicuous example of these debilitating tendencies, which play out in issues as diverse as nuclear waste disposal, protection of endangered species, and regulation of pharmaceuticals. How would a more politically diverse scientific community improve this situation? First, it could foster greater confidence among Republican politicians about the legitimacy of mainstream science. Second, it would cultivate more informed, creative, and challenging debates about the policy implications of scientific knowledge. This could help keep difficult problems like climate change from getting prematurely straitjacketed by ideology. A more politically diverse scientific community would, overall, support a healthier relationship between science and politics.
  • It should come as no surprise that the increasing politicization of science has come to make science more political rather than politics more scientific.  At the same time, the more partisan and/or and ideological that you are, the more welcome and comfortable that you will find the politicization of science, as it reenforces your preconceptions.
  • ...7 more annotations...
  • It also fits perfectly into a political strategy that holds that arguments about science can help to resolve political debates.  Climate change is only the most visible of this tendency, where the empirical evidence shows that efforts to wage climate politics through climate science have had the greatest effect in magnifying the partisan divide.  Some are blinded by these dynamics -- for instance Chris Mooney excuses the extreme partisanship/ideology of AAAS members by blaming  . . . George W. Bush.
  • Anyone concerned with political decision making in a society that contains a diversity of partisan and ideological perspectives should be concerned that, in one sector at least, the experts that we rely on have views that are far different than the broader society.  One response to this would be to wage a political battle to try to convert the broader society to the values of the experts, perhaps through the idea that improving science communication or education a great value transformation will occur.
  • My sense is that this strategy is not just doomed to fail, but will have some serious blowback effects on the scientific community itself.  More likely from my view is that such efforts to transform society through science will instead lead to the partisan debates across society taking firmer root within our expert communities. This is a topic that deserves more discussion and debate.  Dan Sarewitz concludes provocatively that, "A democratic society needs Republican scientists."
  • It is important to recognize that hyper-partisans like Joe Romm and Chris Mooney will continue to seek to poison the wells of discussion within the scientific community (which is left-leaning, so this is a discuss that needs to occur at least to start within the left) through constant appeals to partisanship and ideology.  Improving the role of science and scientists in our political debates will require an ability to rise above such efforts to associate the scientific community with only a subset of partisan and ideological perspectives.  But science and expertise belongs to all of us, and should make society better as a whole.
  • anecdote is not the singular of data.
  • One benefit of the politicizing of science is that it caused smart people outside the field to look closely at what was going on behind the curtain. That has been harmful to the short run reputation of science, but helpful to the long run competence of science.
  • I think that the Nisbet report missed the point entirely.This is a better summary of the problem the AGW promotion industry is facing:http://www.publicserviceeurope.com/article/136/climate-fatigue-leaves-global-warming-in-the-cold#commentHere is a nice part:"The public's concern about global warming as a pressing problem is in marked decline not least because of the growing realisation that governments and the international community are ignoring the advice of climate campaigners. Instead, most policy makers around the world refuse to accept any decisions that are likely to harm national interests and economic competitiveness.They are assisted in this policy of benign neglect by a public that has largely become habituated to false alarms and is happy to ignore other claims of environmental catastrophe that are today widely disregarded or seen as scare tactics."Nisbet's intricate mechanisms resolutely avoid facing this reality, and in doing so is left with little meaning.
Weiye Loh

Rationally Speaking: The Michael Hecht-Rationally Speaking affair - 0 views

rationallyspeaking.blogspot.com/...hecht-rationally-speaking.html

Podcast Plagiarism New Media

shared by Weiye Loh on 23 Jun 11 - No Cached
  • As many of our readers and podcast listeners have now learned, author, colleague and friend Jennifer Michael Hecht has started an internet campaign on June 22nd using social media to accuse us of plagiarism.
  • Jennifer apparently believes that we in some form stole her ideas, as presented in her 2008 book, The Happiness Myth
  • We protested our innocence, emphasizing that the only areas of overlap between her book and our podcast concern a few very common topics about happiness (its treatment by Aristotle and Epicurus, so-called happiness “set points,” and the question of whether wealth is connected to happiness). These, we pointed out, are so fundamental to a discussion of happiness that they are practically mandatory in any treatment of it. It would be odd indeed to have a show on happiness and not mention the research on set points, or on income and happiness — sort of like talking about evolution without mentioning Darwin and natural selection. We also pointed out that said topics make up only a small fraction of those we discussed in the podcast, and of her book for that matter. These ideas are certainly not Jennifer’s original contributions (of which there are many genuine examples in her book); rather, they have been widely discussed in the media, academic journals, and in many popular press books, such as Stumbling on Happiness by Daniel Todd Gilbert, Authentic Happiness by Martin E. P. Seligman, and The Happiness Hypothesis, by Jonathan Haidt.
  • ...3 more annotations...
  • a podcast (as opposed to, say, a book, or a technical paper) is a summary for a lay audience, and is not in any way a scholarly pursuit towards defining new ideas on the topic. This means that it isn't even clear how the very concept of plagiarism could possibly apply in this context. Nevertheless, we asked Jennifer — multiple times — to provide us with a detailed list of her charges, such as at what points in the podcast we used exactly what from her book. We thought that was fair, considering that she was the one making the potentially damaging charges. She refused, stating that we should do that kind of home work on our own. So we did. Below is a table that Julia and I put together, with a minute-by-minute summary and commentary of the entire podcast.
  • c) Those ideas that do overlap with Jennifer’s are common knowledge in the field. 
  • We deeply regret this incident, particularly the manner in which Jennifer has chosen to exploit social networks to smear our reputation before even attempting to contact us and hear our side of the story. We stand by the content and form of our podcast, which we think is intrinsically interesting (while certainly not groundbreaking!). We also still profess admiration for Jennifer’s work, not just about happiness, but in her other books as well, and hope that this ugly incident can soon be put behind us so that we can all get back to what we enjoy doing: writing and talking about interesting topics for an intelligent and informed audience.
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