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Erich Feldmeier

Olivia Diem, Prof. Christine Leib-Mösch: Antipsychotika können die Aktivitä... - 0 views

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    "Die Aktivität humaner endogener Retroviren (HERVs) in Gehirnzellen von Patienten mit Schizophrenie oder bipolaren Erkrankungen kann durch die Behandlung mit antipsychotischen Medikamenten verstärkt werden. Wissenschaftler des Helmholtz Zentrums München zeigen in der aktuellen Ausgabe des Fachjournals PLoS ONE, dass Medikamente wie Valproinsäure wahrscheinlich über epigenetische Veränderungen im Genom die HERV Expression beeinflussen."
Erich Feldmeier

Genome Alberta | Genomics Blog | Biohacking 101: Tools of the Biopunk Trade - 0 views

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    "Cathal Garvey demonstrating Do-it-Yourself DNA extraction in a tent from smarimc on Vimeo. Biohackers, like computer hackers before them, need little more than an electronic mailing list to trade tips and information and find the tools they need. DIYbio is by far the largest such list."
Erich Feldmeier

@vbioeev @biogarage Biohacking Pieter van Boheemen - Waag Society - 0 views

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    "Life Science Technologist Pieter van Boheemen works as a project developer for Waag Society's Open Wetlab. Pieter is a Life Science Technologist. In his work he mixes his Genomics degree with lots of experience in IT. He gets his every day inspiration from working with great people, then do cool stuff to maximize everyones motivation and performance"
thinkahol *

Jumping genes provide extensive 'raw material' for evolution, study finds - 0 views

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    ScienceDaily (June 2, 2010) - Using high-throughput sequencing to map the locations of a common type of jumping gene within a person's entire genome, researchers at the University of Pennsylvania School of Medicine found extensive variation in these locations among the individuals they studied, further underscoring the role of these errant genes in maintaining genetic diversity.
Charles Daney

The Great Beyond: Alzheimer's genes identified - 0 views

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    Three new genes associated with Alzheimer's have been discovered, to the delight of researchers in the field. In two papers published in Nature Genetics, two teams describe how they compared the genomes of sufferers to healthy controls to identify potential gene variations leading to the disease.
thinkahol *

Scientists identify DNA that may contribute to each person's uniqueness | KurzweilAI - 0 views

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    Building on a tool that they developed in yeast four years ago, researchers at the Johns Hopkins University School of Medicine scanned the human genome and discovered what they believe is the reason people have such a variety of physical traits and disease risks.
Charles Daney

Early Life Didn’t Just Divide, It United | Wired Science | Wired.com - 0 views

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    A massive analysis of almost every bacterial genome sequenced to date suggests a new shape for the tree of life. digg_url
Walid Damouny

Telomeres resemble DNA fragile sites - 0 views

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    Telomeres, the repetitive sequences of DNA at the ends of linear chromosomes, have an important function: They protect vulnerable chromosome ends from molecular attack. Researchers at Rockefeller University now show that telomeres have their own weakness. They resemble unstable parts of the genome called fragile sites where DNA replication can stall and go awry. But what keeps our fragile telomeres from falling apart is a protein that ensures the smooth progression of DNA replication to the end of a chromosome.
Skeptical Debunker

We're so good at medical studies that most of them are wrong - 0 views

  • Statistical validation of results, as Shaffer described it, simply involves testing the null hypothesis: that the pattern you detect in your data occurs at random. If you can reject the null hypothesis—and science and medicine have settled on rejecting it when there's only a five percent or less chance that it occurred at random—then you accept that your actual finding is significant. The problem now is that we're rapidly expanding our ability to do tests. Various speakers pointed to data sources as diverse as gene expression chips and the Sloan Digital Sky Survey, which provide tens of thousands of individual data points to analyze. At the same time, the growth of computing power has meant that we can ask many questions of these large data sets at once, and each one of these tests increases the prospects than an error will occur in a study; as Shaffer put it, "every decision increases your error prospects." She pointed out that dividing data into subgroups, which can often identify susceptible subpopulations, is also a decision, and increases the chances of a spurious error. Smaller populations are also more prone to random associations. In the end, Young noted, by the time you reach 61 tests, there's a 95 percent chance that you'll get a significant result at random. And, let's face it—researchers want to see a significant result, so there's a strong, unintentional bias towards trying different tests until something pops out. Young went on to describe a study, published in JAMA, that was a multiple testing train wreck: exposures to 275 chemicals were considered, 32 health outcomes were tracked, and 10 demographic variables were used as controls. That was about 8,800 different tests, and as many as 9 million ways of looking at the data once the demographics were considered.
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    It's possible to get the mental equivalent of whiplash from the latest medical findings, as risk factors are identified one year and exonerated the next. According to a panel at the American Association for the Advancement of Science, this isn't a failure of medical research; it's a failure of statistics, and one that is becoming more common in fields ranging from genomics to astronomy. The problem is that our statistical tools for evaluating the probability of error haven't kept pace with our own successes, in the form of our ability to obtain massive data sets and perform multiple tests on them. Even given a low tolerance for error, the sheer number of tests performed ensures that some of them will produce erroneous results at random.
thinkahol *

New MRSA superbug discovered in cows' milk - health - 03 June 2011 - New Scientist - 1 views

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    A new strain of MRSA has been identified in cows' milk and in people, but don't stop drinking milk - the bug is killed off in pasteurisation. However, the strain evades detection by standard tests used by some hospitals to screen for MRSA (methicillin-resistant Staphylococcus aureus), potentially putting people at risk. Laura Garcia Alvarez, then at the University of Cambridge, and colleagues were studying infections in British cows when they discovered antibiotic-resistant bacteria that they thought were MRSA. However, tests failed to identify the samples as any known strains of the superbug. Sequencing the mystery bacteria's genomes revealed a previously unknown strain of MRSA with a different version of a gene called MecA. The new strain was also identified in samples of human MRSA, and is now known to account for about 1 per cent of human MRSA cases.
thinkahol *

An introduction to the microbiome | Not Exactly Rocket Science | Discover Magazine - 0 views

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    You could be sitting alone and still be completely outnumbered for your body is home to trillions upon trillions of tiny passengers - bacteria. Your body is made up of around ten trillion cells, but you harbour a hundred trillion bacteria. For every gene in your genome, there are 100 bacterial ones. This is your 'microbiome' and it has a huge impact on your health, your ability to digest food and more. We, in turn, affect them. Everything from the food we eat to the way we're born influences the species of bacteria that take up residence in our bodies.This slideshow is a tour through this "universe of us". Every slide has links to previous pieces that I've written on the subject if you want to delve deeper.Image by David Gregory & Debbie Marshall, Wellcome Images
thinkahol *

Drug reverses accelerated aging | KurzweilAI - 2 views

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    An immune-suppressing drug called rapamycin could possibly treat Hutchinson-Gilford progeria syndrome (HGPS), a rare genetic disease that causes premature aging, and advance biological understanding of the normal aging process, according to researchers from the National Human Genome Research Institute (NHGRI) at the National Institutes of Health, the University of Maryland and Massachusetts General Hospital. Progeria is a genetic disorder characterized by dramatic premature aging. "Progerin that causes progeria also accumulates, although in very small amounts, in normal aging," said Dimitri Krainc, M.D., Ph.D., associate professor of neurology at Harvard Medical School. "However, if rapamycin proves to have beneficial effects in lifespan in humans it is safe to assume that it will not be just because it may clear progerin from cells, but also because it clears other toxic products that accumulate during aging." Ref.: Francis S. Collins, et al., Rapamycin Reverses Cellular Phenotypes and Enhances Mutant Protein Clearance in Hutchinson-Gilford Progeria Syndrome Cells, Science, 2011; [DOI: 10.1126/scitranslmed.3002346]
anonymous

Klebsiella Pneumoniae Experiment - Trivedi Science - 0 views

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    Trivedi Science - Solation of genomic DNA from Klebsiella pneumonia (ATCC 15380) samples, generating RAPD-Fingerprinting profiles showing Polymorphic bands with five RAPD primers
anonymous

Vibrio Parahaemolyticus Test and Experiment - Mahendra Trivedi - 0 views

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    Vibrio Parahaemolyticus - Genomic DNA was isolated from the pure culture pellet provided by Medical Research Centre- (Mumbai), on behalf of Mahendra Trivedi.
anonymous

Ending The Web Of Diseases Through Genetic Research - 2 views

The study of human DNA and genetic material belonging to other organisms to discover what genes and external environmental factors add to is called Genetic Research. If we find out what causes seve...

genetic research genetic modification

started by anonymous on 17 Jan 15 no follow-up yet
Erich Feldmeier

Computer Security and DNA sequencing , dnasec.pdf @vbioev @synbioinfo @gedankenstuecke ... - 0 views

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    "The rapid improvement in DNA sequencing has sparked a big data revolution in genomic sciences, which has in turn led to a proliferation of bioinformatics tools. To date, these tools have encountered little adversarial pressure. This paper evaluates the robustness of such tools if (or when ) adversarial attacks manifest. We demonstrate, for the first time, the synthesis of DNA which - when sequenced and processed - gives an at- tacker arbitrary remote code execution. To study the feasibility of creating and synthesizing a DNA-based exploit, we performed our attack on a modified down- stream sequencing utility with a deliberately introduced vulnerability. "
Walid Damouny

Key information about breast cancer risk and development is found in 'junk' DNA - 0 views

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    "A new genetic biomarker that indicates an increased risk for developing breast cancer can be found in an individual's "junk" (non-coding) DNA, according to a new study featuring work from researchers at the Virginia Bioinformatics Institute (VBI) at Virginia Tech and their colleagues."
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