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Mickey Tsai

Parkinson's disease sufferer Sheila Roy can write for the first time in 15 years thanks to new gene therapy | Mail Online - 0 views

  • one of only 15 people worldwide to undergo the radical treatment, which involves inserting corrective genes into the brain
  • The genes provide the coded instructions for proteins needed to make dopamine, a brain chemical essential for proper control of movement.
  • Lack of dopamine leads to the symptoms of tremor, stiffness and poor balance associated with Parkinson’s.
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  • Mrs Roy is taking part in an early-stage study of the ProSavin therapy
  • Following her treatment Sheila Roy has been able to carry out tasks like writing, something she has been unable to do for 15 years
  • Gene therapies hold great promise for people with Parkinson’s in the future, as they could mean an end to the daily regime of drugs that most people with the condition currently face.
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    A woman with Parkinson's was able to write for the first time in 15 years because of gene therapy. Parkinson's includes symptoms such as tremors, loss of balance which makes it impossible to do even simple tasks. Doctors injected a modified virus carrying the genes to the motor centre of her brain which provide coded instructions for proteins needed to make dopamine. Lack of dopamine leads of the symptoms associated with Parkinson's. This is part of the ProSavin therapy developed by Oxford BioMedica. Gene therapies hold a lot of hope for people with Parkinson's that could end the daily routine of drugs that most of them go through.
adisa narula

The Top 10 Everything of 2009 - TIME - 1 views

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    The decoding of the human genome nearly a decade ago fueled expectations that an understanding of all human hereditary influences was within sight. But the connections between genes and, say, disease turned out to be far more complicated than imagined.
Pop karnchanapimonkul

Dieting During Pregnancy Increases Risk Of Obesity And Diabetes For Offspring - 0 views

  • babies of mothers who diet around the time of conception and in early pregnancy, may have an increased risk of obesity and type 2 diabetes throughout their lives. This study provides exciting insights into how behavior can lead to epigenetic changes in offspring related to obesity and disease.
  • dieting around the time a baby is conceived may increase the chance of the child becoming obese later in life
  • changes in the genes that control food intake and glucose levels that may lead to obesity and diabetes.
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  • epigenetic changes with alterations in the structure of the DNA and its associated proteins, histones, which affects the way that genes can behave in later life.
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    Article about how dieting during pregnancy cause offsprings to have a change in genes.
Sea Maskulrath

The Ice Age Elephant - Mammuthus primigenius | Scitech | The Earth Times - 0 views

  • preserved remains of a shaggy monster that lived in Siberia at -40°C 10,000 years ago have been uncovered;
  • The frozen and p
  • reserved remains of a shaggy monster that lived in Siberia at -40°C 10,000 years ago have been uncovered;
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  • Only microscopic amounts of DNA are left on the skeletons, including all the bacteria that lived on the animals. No usable DNA is therefore often found in bone, but mammoth hair is plentiful. Shampooed and bleached and digested, the hair, even at 18,000 years old, can have 90% of the DNA left. The genome shows 4 different "races" of this species. Research has also shown the recreated blood of mammoth. It doesn't decrease its oxygen capacity at the low temperatures the mammoth had to endure. That increased oxygen-offloading ability was one of the essential physiological changes evolved especially for this species, just like the Yuka kidney.
  • Cloning the mammoth has been an aim of Japanese scientists for several years. They discovered almost intact bone marrow from a thigh bone in Yakutsk and hope to use a female elephant for what is obviously more than a simple experiment within the next 5 years.
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    The return of the giant, not a long wait :) 
Paige Prescott

Human Genome Project Science - 7 views

  • The human genome contains 3164.7 million chemical nucleotide bases (A, C, T, and G).
  • The average gene consists of 3000 bases, but sizes vary greatly, with the largest known human gene being dystrophin at 2.4 million bases.
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    check out when the last time this page was updated.  What information has changed in the last 4 years?
Sea Maskulrath

Scientists clone pashmina goat - Hindustan Times - 0 views

  • three years of producing the first-ever buffalo animal clone, Indian scientists have now successfully cloned the world's first pashmi
  • The cloned baby is kept under medical observation at the off campus sheep breeding centre and is in "fine health"
  • The cloned was produced with the help of a cost-effective "hand guided t
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  • echnique" and NDRI had used the same technology to clone two buffalo calves on its Karnal campus.
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    Now that the cost of the pashmina will be lowered, we have to thank Dr.Tej for his hard work and that we cannot underestimate indian biotechnology.   
wasin kusakabe

Athletic frogs have faster-changing genomes - 0 views

    • wasin kusakabe
       
      Physical activities can change the DNA sequence which can be passed on to later generations. However this has only been tested on frogs and may not apply to mammals like us.
  • Physically fit frogs have faster-changing genomes
  • Stretches of DNA accumulate changes over time
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  • athletic frogs tended to have faster-changing genomes.
  • During exercise, the circulatory system provides blood and oxygen to the tissues that are needed most
  • When physical activity has stopped, the rush of blood and oxygen when circulation is restored to those tissues produces a burst of free radicals that can cause wear and tear on DNA, eventually causing genetic changes that -- if they affect the DNA of cells that make eggs or sperm -- can be passed to future generations.
Mickey Tsai

Autism gender bias clue found - Health - CBC News - 0 views

  • four times more common among males than females.
  • rare family with four generations in which males carrying the glitch were affected but females were not.
  • When male fetuses are missing one copy of the gene, it throws off their developmental process enough to lead to autism but female biology differs enough that it doesn't matter.
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  • now that doctors know that the SHANK 1 gene is involved and it can be tested for, they'll know to follow affected males very closely and offer treatments early on.
  • lved and it can be tested for, they'll know to follow affected males very c
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    Scientists have long wondered why autism is much more common among males than females. When males miss one copy of a gene it messes up the development process enough to cause autism but female biology differs enough to make it not matter. Now that scientists have identified that the SHANK 1 gene is involved they can test for it and could offer treatments early.
Nitchakan Chaiprukmalakan

Proteins and quantum transition: Instant shape-shifting - 0 views

  • The genetic code in DNA provides the template to manufacture protein into all the cells of an organism.
  • Proteins are made by stringing together amino acids. For general purposes there are twenty amino acids in protein and they can be put together in endless combinations, some in short chains (yeast averages 466 amino acids), some long chains (titins have nearly 27,000 amino acids) and everything in-between. The pattern of amino acids determines much of the functionality of the protein.
  • Proteins are three-dimensional puzzle pieces. They are generally very complicated in shape. Even a small protein of only 100 amino acids can theoretically have 10^100 (ten to the hundredth power) different configurations.
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  • most protein reconfigurations occur in nanoseconds
  • In research on proteins, it was assumed (given their chemical composition) proteins would uniformly fold as they cool down and unfold as they heat up. (Think of a balloon expanding and shrinking with the temperature of the air inside.) The experiments didn’t bear this out; the rate of folding or unfolding according to temperature change was unequal (asymmetric) and uneven (nonlinear).
  • In recent biochemistry a great deal of work is done with ‘tagging’ or ‘marking’ molecules with fluorescent and phosphorescent materials. It’s well known that fluorescence and phosphorescence are phenomena closely related to protein folding and they can only be understood in terms of quantum transition between molecules.
  • With a quantum transition, the protein could change configuration by ‘jumping’ – skipping all the transition steps – to the final configuration. They call this quantum folding and they developed a mathematical model that shows how the folding, which is virtually instantaneous, would react to change in temperature.
  • Their quantum transition model matched the folding curves for 15 different proteins and also provides an explanation for the different rates of folding and unfolding among these proteins.
  • Luo and Lu’s paper is short, a mere 16 pdf pages, and the model is unpretentious mathematically. (Luo has several other related papers on arXiv.) It comes from unknown researchers in an unknown corner of the academic world, and it’s published on the open-source arXiv system. The lack of pedigree means that it will take more time than usual for scientists around the world to learn of it, examine it, and possibly test it.
    • Nitchakan Chaiprukmalakan
       
      This is not accepted as a true fact yet and has to be proven.
Nitchakan Chaiprukmalakan

Hoogsteen base pairs: An alternate structure in DNA - 0 views

  • This discovery, made by a team of researchers from the University of Michigan (USA) and the University of California, Irvine (USA) and published in the journal Nature January 26, 2011 [Transient Hoogsteen base pairs in canonical duplex DNA] involves a new capability of nuclear magnetic resonance (NMR) machines and something most people have never heard of (including me): Hoogsteen base pairs.
  • It was discovered by the biologist Karst Hoogsteen in 1963. In effect, the Hoogsteen base pair is a ‘normal’ Watson-Crick base pair (usually A-T) flipped-over like an upside-down step on a ladder.
  • It changes the geometry and allows for truly exotic formations such as a triple helix or even quadruplex structures.
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  • Hoogsteen base pairs were known to exist primarily in RNA and had been observed in DNA only when there was damage to the DNA structure, or something else like a protein or drug was bound to it.
  • In RNA the Hoogsteen base pairs have been studied fairly extensively. They are considered an “excited state” and are useful to observe unusual protein binding. In DNA the Hoogsteen base pairing, which by the way has two forms, normal and reverse, was considered an anomaly.
  • It was discovered that normal DNA undergoes these shifts about 1% of the time and they last only milliseconds.
  • “Together, these data suggest that there are multiple layers of information stored in the genetic code.” Because critical interactions between DNA and proteins are thought to be directed by both the sequence of bases and the flexing of the DNA molecule, these excited states represent a whole new level of information contained in the genetic code.
Rafael Chen

Biotechdaily - First Microbes Found to Break Down PCBs - 0 views

  • PCBs can buildup in fish and marine mammals, reaching thousands of times higher levels than found in the water they live in
  • using a rapid, DNA screening method, researchers have discovered a bacterium capable of degrading PCBs
  • this will lead to the complete dechlorination of persistant molecules
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  • important for bioremediation efforts and for developing molecular probes to monitor PCB degrading
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    Using DNA screening method, researchers have discovered a bacterium capable of degrading PCBs
orasa sukmark

Junk DNA Can Revive and Cause Disease, Study Finds - NYTimes.com - 0 views

  • can rise from the dead like zombies
  • dead gene come back to life and cause a disease
  • a dead gene come back to life and cause a disease.
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  • Some of those genes, surprised geneticists reported Thursday, can rise from the dead like zombies, waking up to cause one of the most common forms of muscular dystrophy.
    • adisa narula
       
      Do these genes revive automatically?
  • It is a dominant genetic disease.
  • people who have the disease cannot smile.
  • FSHD affects about 1 in 20,000 people
  • function, if any, is largely unknown.
  • function, if any, is largely unknown
  • FSHD, is one of the most common forms of muscular dystrophy.
  • in a way FSHD was the easy case — it is a disease that affects every single person who inherits the genetic defect. Other diseases are more subtle, affecting some people more than others, causing a range of symptoms.
  • The dead gene was also repeated on chromosome 10, but that area of repeats seemed innocuous, unrelated to the disease. Only chromosome 4 was a problem.
  • chromosome 4 was a problem.
  • No one whose dead gene was repeated more than 10 times ever got FSHD
  • it was not completely inactive. It is always transcribed
  • copied by the cell as a first step to making a protein.
  • But the transcriptions were faulty, disintegrating right away. They were missing a crucial section, called a poly (A) sequence, needed to stabilize them.
  • But the transcriptions were faulty, disintegrating right away. They were missing a crucial section, called a poly (A) sequence, needed to stabilize them.
  • extra copies change the chromosome’s structure, shutting off the whole region so it cannot be used.
orasa sukmark

Shot of Young Stem Cells Makes Rapidly Aging Mice Live Much Longer and Healthier - Gate2Biotech.com - 1 views

  • animals that got the stem/progenitor cells improved their health and lived two to three times longer than expected,
  • "Our experiments showed that mice that have progeria, a disorder of premature aging, were healthier and lived longer after an injection of stem cells from young, healthy animals," Dr. Niedernhofer said. "That tells us that stem cell dysfunction is a cause of the changes we see with aging."
  • "Typically the progeria mice die at around 21 to 28 days of age, but the treated animals lived far longer -- some even lived beyond 66 days. They also were in better general health."
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  • we injected stem/progenitor cells from young, healthy mice into the abdomens of 17-day-old progeria mice,
  • As the progeria mice age, they lose muscle mass in their hind limbs, hunch over, tremble, and move slowly and awkwardly. Affected mice that got a shot of stem cells just before showing the first signs of aging were more like normal mice, and they grew almost as large.
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    the experiment from the University of Pittsburgh shows that the mice can be stronger live longer after they were injected with stem cells from young healthy animals.
chanon chiarnpattanodom

Cancer epigenetics takes center stage - 1 views

    • chanon chiarnpattanodom
       
      DNA methylation is a chemical process where a methyl group is added on either the cytosine ring or the adenine ring, used in "higher leveled" organisms. Important in cell differentiation since methylation will cause cells to "remember" and remain differenciated instead of expressing other genes. 
  • Epigenetics is defined as modifications of the genome, heritable during cell division, that do not involve a change in the DNA sequence.
  • Epigenetic alterations in cancer include global hypomethylation
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  • the promoters of housekeeping genes that are generally protected from methylation.
  • may lead to aberrant silencing of tumor suppressor genes
  • discovered loss of imprinting (LOI) in cancer
  • Genomic imprinting, the subject of the report by Nakagawa et al. (2), is an epigenetic modification of a specific parental allele of a gene, or the chromosome on which it resides, in the gamete or zygote, leading to differential expression of the two alleles of the gene in somatic cells of the offspring.
  • we found that LOI can occur in the normal colonic mucosa of colorectal cancer patients with LOI in their tumors
  • This LOI was linked to cases showing microsatellite instability (MSI) in the tumors
  • However, these patients do not have mutations in mismatch repair genes
  • One potential cause of MSI in these sporadic cancers is hypermethylation and epigenetic silencing of the hMLH1 mismatch repair gene
  • Nakagawa et al. (2) now confirm the original study of Cui et al. that LOI occurs in both tumor and normal tissue of patients
  • The present study (2) also offers an intriguing mechanistic hypothesis to explain the relationship between H19 DMR methylation and LOI in these patients
  • Nevertheless, the study calls attention to this remarkable highly conserved multifunctional protein,
  • The potential link to CTCF suggested by this study also calls our attention to the link among DNA methylation, epigenetics, and chromatin.
  • A clue to the link between MSI and epigenetics may be provided by another sometimes overlooked common thread in epigenetics, namely DNA replication
  • repeat-induced gene silencing is thought to be propagated through hemimethylated intermediates during DNA replication
  • The studies of Cui et al. (11), Nishihara et al. (20), and Nakagawa et al. (2) suggest a new and provocative view of the timing of epigenetic changes in cancer.
  • Studies of transgenic mice with constitutive biallelic expression of IGF2, comparable to LOI, show reduced apoptosis and increased tumor formation
  • I conclude by noting that the distinction between cancer genetics and epigenetics has blurred considerably in recent years
  • Many conventional “genetic” mechanisms directly affect proteins that regulate chromatin,
Sasicha Manupipatpong

Gene switches do more than flip 'on' or 'off': Can exhibit much more complex binding behavior - 1 views

  • right genes for the job are turned on only in the specific cells where they are needed
  • molecular "clutch" that converts treadmilling to a stable bound state, moving the transcription process forward to completion to turn the gene on
  • act like a switch; they are either "on" (bound to DNA) or "off" (not bound)
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  • can exhibit much more complex binding behavior
  • transcription factors' binding process is dynamic and involves more than just being bound or unbound
  • In addition to a stable binding state (on or off)
  • "treadmilling," where no forward transcription process is occurring
  • indicator of whether a gene was turned on or off
  • measure and calculate how long a protein is associated with all of the different genes it regulates
  • proteins that bind in the stable state are associated with high levels of gene transcription
  • if we can regulate the transition between treadmilling and stable binding, we can regulate the outcome in terms of gene expression
  • genetic medicine -- a new way to regulate the 'switches' that turn gene expression associated with disease on or off.
  • measured how long it took the competitor transcription factor to replace the resident protein and used this data to calculate the residence time at each location in the genome
  • specific proteins called "transcription factors" that control which genes are turned on or off in cells by binding to nearby DNA
  • new insights on how cells respond to developmental cues and how they adapt to changing environmental conditions
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    Genes have been discovered to be more complex than we previously thought--rather than having only on and off states, there is an intermediate state called "treadmilling".
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