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Sean Nash

Could the world famous Roman Baths help scientists counter the challenge of antibiotic ... - 1 views

  • Proteobacteria and Firmicutes
    • Sean Nash
       
      If we were able to sample various springs/baths in the midwest could we even culture strains like this, and then what would it take to identify them? You could compare that perhaps to total colony counts on Petri dishes.
  • a detailed examination of the bacterial and archaeal communities found within the waters of the popular tourist attraction in the city of Bath
    • Sean Nash
       
      The Elms is a famous springwater bath locale here in Excelsior Springs, Missouri less than an hour away. Eureka Springs, Arkansas is another area nearby off the top of my head. This also has me asking general questions about other bathing scenarios that would not likely feature ancient microbes, like hot tubs, swimming pools, etc. I wonder about ALL of the variables that go into the conditions of these baths and how that might correlate to total numbers of bacteria as well as differing types. There isn't a TON of microbiology that we can do in the high school lab without help, but I do know that we are generally permitted to work with environmentally-found bacteria (like the little lab we did in the Addie unit).
  • Scientists collected samples of water, sediment and biofilm from locations within the Roman Baths complex including the King's Spring (where the waters reach around 45°C) and the Great Bath, where the temperatures are closer to 30°C.
    • Sean Nash
       
      This means they collected from the water column itself, but also biofilms (which would be found along the edges of containments walls, etc... in addition to sediment found at the bottom of natural spring sources.
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  • The samples were then analysed using cutting edge sequencing technology and traditional culturing techniques were employed to isolate bacteria with antibiotic activity.
    • Sean Nash
       
      This obviously would require a significant bit of outside help. However, I'm still not sure we couldn't do more basic work that would be meaningful.
Sean Nash

Airplane Noise Exposure May Increase Risk of Chronic Disease | SPH - 0 views

  • people who were exposed to higher levels of noise from aircraft were more likely to have a higher body mass index, an indicator for obesity that can lead to stroke or hypertension. The findings highlight how the environment—and environmental injustices—can shape health outcomes
  • self-reported body mass index (BMI)
  • The study is the first to explore a connection between aircraft noise exposure and obesity nationwide in the United States; past studies on this subject have focused on European populations, and results have varied
    • Sean Nash
       
      It would be interesting to see how these studied varied. I would bet that there are other, stronger factors overlying this effect, and it would be challenging to tease out this signal from other socioeconomic factors, but I very much like this concept.
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  • “Prior research has shown that aircraft noise can elevate stress responses and disturb sleep, but there has been mixed evidence of any links with body mass index,” says study lead and corresponding author Matthew Bozigar, assistant professor of epidemiology at OSU and a former postdoctoral associate at SPH. “We were surprised to see a fairly robust link between aircraft noise and higher body mass index among women across the US.”
  • These new findings underscore the role of the environment on one’s risk of chronic disease.
  • Junenette Peters, associate professor of environmental health, and colleagues examined airplane noise exposure and self-reported BMI and other individual characteristics among nearly 75,000 participants living around 90 of the major US airports
  • The team examined aircraft noise levels every five years from 1995 to 2010, using a day-night estimate (DNL) that captures the average noise level over a 24-hour period and applies a 10 dB adjustment for aircraft noise occurring at night, when background noise is low.
    • Sean Nash
       
      I'm sure there are low-powered data loggers that measure dB that we could plant in various places (varying distances from airports (or other things... even just distances from population centers in general). This would allow us to not only work with and search for correlations between data points already collected, but also to generate more specific data on our own. The human data might not necessarily have to be collected by us. The challenge might be just to find databases that have already been collected for various reasons. Much science is done in this way, where instead of generating a ton of data to analyze, the researcher used previously collected data to ask new and interesting questions of.
  • Although the team acknowledges that BMI is a suboptimal metric, the independent and strong association between more aircraft noise exposure and higher BMI that they observed is notable.
  • “We can only hypothesize about why we saw these regional variations, but one reason may relate to the era of regional development, building characteristics, and climate which may affect factors such as housing age, design, and level of insulation,” says Peters. “Regional differences in temperature and humidity may influence behaviors such as window opening, so perhaps study participants living in the West were more exposed to aircraft noise due to open windows or housing type, which allowed more noise to penetrate.”
    • Sean Nash
       
      The really interesting work here would be teasing interesting patterns out of really complex data sets. For example, people living near airports typically live in housing that is less expensive due to the lesser desirability of living in that area. That tends to correlate with lower socio-economic status found near airports. However, this is interesting because the major flightpaths to the KCI airport do not exactly line up in this way. For example, three of the school districts in Missouri that line up with KCI runways (Park Hill Schools - where we live, Platte County Schools, Kearney Schools, Smithville Schools, and the northern part of North Kansas City Schools) are all of a higher than average socioeconomic status than outlying areas closer to the city. This is unusual in major metropolitan areas.
  • Previous data suggest that Black, Hispanic, and low-income populations are disproportionately exposed to aircraft noise. The participants in the NHS study groups were primarily White and of mid-level socioeconomic status. 
    • Sean Nash
       
      Again, this is a bit different than around most airports. The area immediately surrounding KCI is rather white and mid-to-upper SES.
  • “We need to study the potential health impacts of environmental injustices in transportation noise exposures alongside other environmental drivers of poor health outcomes” Bozigar says. “There is a lot more to figure out, but this study adds evidence to a growing body of literature that noise negatively impacts health.”
    • Sean Nash
       
      What other environmental factors can be studied either by direct measurement, or by querying previously-collected data to ask/answer questions about environmental health?
joshkirkland

Study shows that opportunity costs influence when people leave social interactions - 1 views

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    I like this sort of research. Do you think a game like this is either build-able or perhaps even getting access to the one they used? Is it open source? Can you track down this paper? I'm wondering about tying it to depression, etc. That might drift into territory they might not approve at this age (especially since all participants have paperwork they have to sign off on, and any participants under 18 have to have the paperwork signed off by a parent. I wonder if you might dig into introversion/extroversion and whether that might have an impact on similar things. Seems like it might.
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    This also makes me think of the UCSD juncos... and how they forage longer in stressful environments due to decreased corticosterone levels....... and how that is a key characteristic allowing them to survive in a human-built environment.
Sean Nash

Q. What's the greener building material, fungus or concrete? - 1 views

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    This is more of a broad idea re: the use of living things as building materials - not so much detail in this specific article
katherine-medina

Frontiers | Overview of Carbon Capture Technology: Microalgal Biorefinery Concept and S... - 2 views

  • The impending danger of climate change and pollution can now be seen on the world panorama. The concentration of CO2, the most important Green House Gas (GHG), has reached to formidable levels.
    • Sean Nash
       
      OK: Is it an important field of study? Check. Is it timely? Check. Is it feasible? Let's see...
  • (iii) microalgae cultivation
    • Sean Nash
       
      You can instantly tell that there would be a strong math component to this work. You would need to show how your finding scale up to total carbon sequestered via whatever method? Biofuel production perhaps?
  • Furthermore, microalgae can be fed with notorious waste gasses such as CO2 and NOx, SOx from flue gas, inorganic and organic carbon, N, P and other pollutants from agricultural, industrial and sewage wastewater sources so as to provide us with opportunities to transform them into bioenergy, valuable products and forms that cause least harm to the environment
    • Sean Nash
       
      OK, so... you could likely create a biofuel from algae produced via the insertion of CO2 into a bioreactor system (perhaps even test the one you have vs. a creation fo your own to maximize growth with a more powerful set of lights and extensive tubing). Right off the top of my head, I know we can easily access commercial CO2 canisters that are used in aquarium setups to boost plant growth. Fluval makes such canisters. You would have to find out the volume/mass of CO2 contained in one. You'd have to be less concerned with toxins of you are able to choose a different algae for this capture vs. the rather toxic species you worked with last year.
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  • The uncomplicated cellular structures and rapid growth of microalgae endow them with CO2 fixation efficiency as higher as 10–50 folds than terrestrial plants
  • Recently, many research studies have come up showing the positive impact of growing microalgae under high concentrations of Ci in the form of pure gaseous CO2, real or simulated flue gas, or soluble carbonate (bicarbonate), reporting increased carbon bio-fixation and biomass productivity
    • Sean Nash
       
      How does the carbon concentration of such things as flue gas (from industry) compare to the levels in a commercially-available CO2 canister? I'm assuming those are lower, but that's OK. You would just need to be able to do the math to compare the ratios. Also, there is nothing that says you couldn't perhaps use multiple canisters to boost the CO2 levels assuming they could survive in whatever concentration you're feeding them with. It does acidify water.
  • Despite such remarkable potential, the production of microalgae for low-value bulk products, such as proteins for food/feed applications, fatty acids for nutraceuticals or bulk products such as biofuels, is heretofore, not economically feasible
    • Sean Nash
       
      So... this asserts that biofuel production (which would already be better than using human food crops such as corn) is not economically feasible. Let's find out WHY it isn't. What do the numbers look like? What is missing? Is there a way to engineer a process that boosts economic feasibility through some innovation?
  • The microalgal biomass majorly constituted of lipids (7–23%), proteins (6–71%) and carbohydrates (5–64%), depending upon the microalgal specie and culture conditions
    • Sean Nash
       
      Start searching for data on the differences of these compounds in algal cultures of various species. Finding the right species in terms of the components produced (though perhaps your process will boost these numbers in some way- verified by testing at a local lab). I would query perplexity to find papers that outline what components are produced by what species.... then you can compare that to the ease of culture of different species.
  • Biofuels from microalgae, production system, conversion technologies, life cycle analyses have been extensively reviewed, hence detailed description is not presented in this review.
    • Sean Nash
       
      This clearly suggests that a TON of work has been done in these areas. The negative? -> Harder to find original work, the positive -> here is a TON of search terms to build up your background knowledge on primary research in these areas. The real creativity in science often stems from finding a unique wrinkle that is embedded in extensive work.
  • the lipid content of common microalgae such as Chlorella, Dunaliella, Isochrysis, Nannochloris, Nannochloropsis, Neochloris, Phaeodactylum, Porphyridium, and Schizochytrium, varies between 20 and 50% of cell dry weight
    • Sean Nash
       
      So, fat production is what is important in biodiesel. That is why a former student of mine utilized kitchen fry oil (used) for the production of biodiesel back in the 90s. Look up the lipid content of each of these species and check that against their toxicity and ease of growing/working with/etc.
  • can be augmented to higher levels by manipulating environmental and other growth factors, process optimization and genetic modifications of the production strain. Nitrogen starvation and salinity stress are known to induce an increase in TAG (triacylglycerol) accumulation and relative content of oleic acid in most of the microalgal species
    • Sean Nash
       
      So, this suggests already some ways in which the lipid content can be augmented via the manipulation of several variables in growth factors. There might ba an angle here.
  • C14:0, C16:0, C18:1, C18:2, and C18:3 fatty acids, yet the relative composition varies from species to species
    • Sean Nash
       
      I'm confident that we can find a local lab that can help us test the length of chain that indicates exactly which fatty acids are being produced and perhaps how that ratio changes based upon some variable in your process.
  • The lipids can be converted into FAMEs (fatty acid methyl esters) via transesterification for biodiesel production.
    • Sean Nash
       
      This is key.... can we convert algal lipids into FAMEs in the lab at school with the help of Harkleroad & Tabor? Find out what all chemical processes are involved. My initial gut feeling i that it isn't an terribly prohibitive process considering how simple biodiesel was to produce in the school lab previously.
  • Furthermore, the residual de-oiled microalgal biomass can be used for animal feed.
    • Sean Nash
       
      Also, a very cool side element to consider. This might help you decide upon an algal species considering the concentration of toxins in various species, etc.
  • The resistance of cell wall to enzyme hydrolysis is one of the prime bottleneck in the Anaerobic digestion (AD) process. The overall economic feasibility of the process depends on the factors affecting AD, microalgal strain, biomass pretreatment, and culture methods (Jankowska et al., 2017). Lately, to make the system economically viable and environmentally sustainable, a closed-loop production scheme is being adopted wherein AD effluents are recycled and used as an input in the first step of AD. Jankowska et al. (2017) have presented a detailed review microalgae’s cultivation, harvesting and pretreatment for AD for biogas production.
    • Sean Nash
       
      This is a fascinating element, and one I know less about. This might be significantly more sophisticated, but that in no way should scare you. Perhaps it isn't that difficult and it would be super fun and challenging to engineer a way to do (or improve) this. (?) However, my initial gut feeling is that working with biogas production would be more difficult than liquid forms.
  • Bioethanol The carbohydrate part (mainly glucose, starch, cellulose, and hemicellulose) of the microalgal dry biomass can be used for transforming into bioethanol via fermentation. Although, microalgae accumulate relatively low quantities of sugars, the absence of lignin from microalgal structure makes them advantageous over other feedstock such as corn, sugarcane, and lignocellulosic biomass (Odjadjare et al., 2015; Jambo et al., 2016). Isochrysis galbana, Porphyridium cruentum, Spirogyra sp., Nannochloropsis oculate, Chlorella sp., are mainly exploited microalgae for the production of carbohydrates
    • Sean Nash
       
      OK, now I'm starting to see where they're going with this specific paper.... they are asserting that you'd have to find a way to separate out all of the components of the produced algal mass to gain value for each component to make it economically feasible. Do you perhaps end up finding that one particular species has both a high lipid profile (for biodiesel) as well as a reasonable carbohydrate profile (for bioethanol)?
    • Sean Nash
       
      I know less about this... is more of a fermentation process and might be a bit more dangerous that biodiesel production. Not sure, just a gut feeling when keeping in mind the safety forms. Something to bookmark.
  • Despite having notable significance, limited number of studies have reported laboratory stage work on the fermentation of microalgae biomass to butanol (Cheng et al., 2015; Gao et al., 2016; Wang et al., 2016).
    • Sean Nash
       
      A huge flag that this is an area ripe for innovation. I don't know much about the feasibility of this.... but it's interesting for sure.
  • Value-Added Products In the context of biorefinery approach, intracellular compounds and metabolites have gained immense importance owing to their high monetary value. Microalgal pigments: chlorophyll a and b, lutein, astaxanthin, β-carotene, phycobilins, C- phycocyanin have found wide application in dyes, cosmetics, food and feed additives, nutraceuticals and pharmaceuticals, as natural colors, bioactive components, anti-oxidants, nutritive and neuro-protective agents (Koller et al., 2014; Begum et al., 2016). Microalgae are also exploited as rich source of amino acids (leucine, asparagine, glutamine, cysteine, arginine, aspartate, alanine, glycine, lysine, and valine), Carbohydrates (β1–3- glucan, amylose, starch, cellulose, and alginates), Vitamins and minerals (vitamin B1, B2, B6, B12, C, and E; biotin, folic acid, magnesium, calcium, phosphate, iodine) that are widely used in Food additives, health supplements and medicine. Microalgae, such as Nannochloropsis, Tetraselmis, and Isochrysis are used for extraction of long chain fatty acids popularly known as the omega fatty acids such as DHA (Docosahexaenoic Acid) and EPA (Eicosapentaenoic Acid), have lately gained prime attention as essential for human brain development and health. Other than these, microalgae are also used for production of Extracellular Polymeric Substances (EPSs) which have many industrial applications and Polyhydroxyalkanoates (PHAs). PHAs can be used for manufacturing bioplastics that are very sought after because of their biodegradability (Markou and Nerantzis, 2013; Koller et al., 2014).
    • Sean Nash
       
      This area is more novel.... and thus, I know the least about the feasibility of this, or our ability to measure the production of such compounds. I know the capability exists in the KC area, but you'd have to establish a relationship with someone who could help with this instrumental analysis.
  • Although many have reported successful utilization of microalgal biomass for the production of bioproducts within a biorefinery framework, the economic feasibility is unrealized and the microalgae biorefinery is way much expensive (’t Lam et al., 2017; Zhou et al., 2017). To attain feasibility and sustainability, both upstream processing (USP) and downstream processing (DSP) need to be efficiently simplified and integrated. The efficiency of the USP is determined by microalgal strain selection, nutrient supply (CO2, N, and P) and culture conditions (temperature, light intensity) (Vanthoor-Koopmans et al., 2013). Whereas, the constraints at the DSP level are mainly characterized by harvesting, cell disruption, and extraction methods. DSP, specifically harvesting accounts for 20–40% of the total production costs and for a multi-product biorefinery, the cost increases to 50–60% (’t Lam et al., 2017).
    • Sean Nash
       
      Managing what is done to the algae PRE growth and POST growth. So many variables here. This is a TON of figure out, but with more variables comes more opportunity if you're willing to learn a broad new area of science (to you).
  • Bioprospecting suitable microalgae is a crucial but time intensive step
  • high throughput screening techniques like 96-well microplate swivel system (M96SS) have made processing upto 768 microalgal samples at the same time, possible
    • Sean Nash
       
      This suggests to me that rather than go down this path of full discovery... can we learn from the extensive work that has already been done here? In other words, your innovation would be less about discovering the right species to use... and more about innovating around the process. (?)
  • mixed diverse community of microalgae, dominated by Desmodesmus spp., could be adapted over a time of many months to survive in 100% flue gas from an unfiltered coal-fired power plant containing 11% CO2
  • Besides stress manipulation and acclimatization, desirable traits of the microalgal strains can be effectively improved by genetic and metabolic engineering/synthetic biology. Lately, genome editing tools such as Clustered Regularly Interspaced Short Palindromic Repeats – CRISPR associated protein 9 (CRISPR-Cas9) and Transcription Activator-Like (TAL) Effector Nucleases (TALEN) are being used in microalgal gene alterations. Moreover, gene-interfering tools, such as CRISPR-dCas9, micro RNA (miRNA), and silence RNA (siRNA) are being explored to alter the gene expression unlike gene modification.
    • Sean Nash
       
      The least "immediately feasible" area of this paper.....
  • Large scale microalgal cultivation and nutrient supply pose huge economic burden. In this context emphasis is being laid on biofilm based attached cultivation rather than aqua-suspend methods that have massive water requirement, low biomass productivity, energy intensive and cannot be easily scaled up
    • Sean Nash
       
      So... the scale is the problem. Methods of growing suspended in water are all I have been thinking of.... even engineering some crazy method of networks of fine, clear tubes full of algae, etc... here they're saying this is a massive challenge and requires a big industrial output to make it economically feasible. The good and the bad? The bad is that you could do a ton fo work that in the end isn't economically feasible for real world use. The good is that optimizing some stage or element of the process could potentially change this calculaton.
  • Centrifugation is the most efficient (>95% efficiency) method for harvesting microalgae
    • Sean Nash
       
      We have a centrifuge. (about a $4000 one, in fact) but it is useful only for small amounts. That doesn't solve the "how do we centrifuge large amounts of algae/water mix to harvest it," but it does allow a scaled-down version for testing small amounts that could be mathematically scaled up.
  • Flocculation is a low-cost alternative. Cationic chemical flocculants and polymeric flocculants are generally used (Brennan and Owende, 2010), but can negatively affect the toxicity of the biomass and output water (Ryan, 2009). Zhou et al. (2012) reported a novel fungi assisted bioflocculation technique, in which a filamentous fungal spores were added to the algal culture under optimized conditions and the pellets were formed after 2 days that can be harvested by simple filtration. Attached culture can also make harvesting simple (Wang et al., 2017).
    • Sean Nash
       
      This whole topic you have stumbled upon (bioengineering of algae as ultimately a way to sequester carbon in an economically-feasible way) is massive in terms of complexity of the entire system. But, subsystems are less complex and more ripe for digging into. The key thing is that this has to be interesting enough to you.... that you are willing to understand ALL of the moving parts so that you would know how your component of the puzzle fits into the broader scope of the work. It is super interesting to me and I do think there are a million variables to choose form here.... once you decide IF this is worth pouring your heart into... it is time to read read read!
  • Microalgae based carbon capture technologies are certainly promising but their successful implementation is still to be realized.
  • But, the prospects of successful commercial deployment lie in unsophisticated innovations in DSP, particularly harvesting, cell disruption and extraction, which can actually cut down the costs at a biorefinery level, along with process integration.
    • Sean Nash
       
      THIS is the sort of thing that should be encouraging. When they say that success lies in "unsophisticated innovations," that should read like: this takes tons of hard work and perseverance, but technically it isn't all that fancy.... to you. This is a good thing.
  • on can
  • . Recent technoeconomic analyses and life-cycle assessments of microalgae-based production systems have suggested that the only possible way for scaling up the production is to completely use the biomass in an integrated biorefinery set-up wherein every valuable component is extracted, processed and valorized.
  • The temperature of the planet has risen by 0.85°C from 1880 to 2012 and it has been forecasted that by the end of this century
  • CCS operate over 3 major steps: CO2 capture, CO2 transportation and CO2 storage.
  • CO2 capture is done from large point sources such as power plants and cement manufacturing plants. The separation and capture of CO2 from other exhaust components is usually done via following methods: (i) chemical absorption; (ii) physical adsorption; (iii) membrane separation; and (iv) cryogenic distillation (Figueroa et al., 2008; Pires et al., 2011, 2012).
  • carbon capture and storage (CCS)
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    I haven't fully finished reading it, but it does seem to be interesting. It may be a rabbit hole I wanna go down.
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    Annotating thoughts for Katherine...
emmarrogers

Biodegradation of polyethylene by the marine fungus Parengyodontium album - ScienceDirect - 1 views

  • UV light
    • emmarrogers
       
      If we were to use X or Gamma rays, would that speed up the process?
  • Graphical abstract
    • emmarrogers
       
      Why does it need the 9 day incubation period? Could we lower that
    • emmarrogers
       
      So, could we just do this with a plastic bottle?
  • degradation
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  • Other important plastic types afloat in the sea are polypropylene (PP) and to a lesser degree polystyrene (PS) and polyethylene terephthalate (PET).
    • emmarrogers
       
      Does/ Could this fungi degrade these as well
  • Zalerion maritimum (Paço et al., 2017), Alternaria alternata FB1 (Gao et al., 2022) and Rhodotorula mucilaginosa (Vaksmaa et al., 2023a), while Cladosporium halotolerans 6UPA1 was shown to degrade PUR (Zhang et al., 2022).
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    Strange.... when I go to this article, I can see your highlights, but I cannot see your comments. Usually, when I can see those, I can comment back right there as opposed to saving it myself. Grrrr...
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    Super interesting topic (I saw this one last week). The work with isotopes they did here is well beyond feasibility for us, but that doesn't mean there isn't something here that could be done. You'd have to work through the set up of marine environments (tanks) and acquisition of these fungal strains. I'm betting the one they recently recovered from biofilm on plastic trash in the ocean would be super difficult to get our hands on, but they do mention several others that have previously been found to degrade plastics. perhaps those are more easily obtained. (?) Degredation fo plastic by microbes is EXACTLY what the cheater-guy did in lasy year's winning ISEF project, but like this article says, most of this work has been done with bacteria, not eukaryotic organisms like fungi. I also thing the area of biofilms is super interesting. The analysis (beyond weighing the plastic pre/post) is rather instrumental and that might be difficult depending upon our ability to find someone to help us analyze instrumentally. I like the idea, but feasibility is unknown at the moment. You might want to keep reading down this area. It is certainly interesting and important. Keep an eye on feasibility as you go forward.
emmarrogers

Frequent mowing puts poisonous weed into survival mode | ScienceDaily - 1 views

  • The taproot went down further
  • More spikes popped out on the stem
  • The flowers became more toxic
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  • Although studies have often highlighted weed fitness and defense traits resulting from disturbances like mowing, most were limited to foliar, or leaf, defenses, Kariyat said. That changed when Vasquez and fellow master's biology students at the University of Texas Rio Grande Valley monitored fields of mowed, unmowed and frequently mowed silverleaf nightshade in and around Edinburg, Texas.
  • "Alejandro's question was, 'how do these flowers differ between mowed and unmowed plants?'"
  • "You are trying to mow these plants so that the plants are getting eliminated," Kariyat said. "But what you are actually doing here, you are making them much worse, much stronger."
  • The observations of mowed, unmowed and frequently mowed areas with silverleaf nightshade provide evidence that could prompt further studies by weed scientists on best management practices, Kariyat said.
    • Sean Nash
       
      Again... when you see a callout like this for more research in an area... especially one that might be feasible with some serious planning/organization... you might be on to something.
  • the study does provide more insight into the defensive capabilities of plants pitted against human disturbance
  • "Continuous mowing differentially affects floral defenses in the noxious and invasive weed Solanum elaeagnifolium in its native range."
  • Journal Reference: Alejandro Vasquez, Alexa Alaniz, Robert Dearth, Rupesh Kariyat. Continuous mowing differentially affects floral defenses in the noxious and invasive weed Solanum elaeagnifolium in its native range. Scientific Reports, 2024; 14 (1) DOI: 10.1038/s41598-024-58672-w
  • Solanum ptychanthum or black nightshade, and Solanum carolinense, or Carolina horsenettle, also produce toxic berries and are native to Arkansas.
    • emmarrogers
       
      Could we possibly research different types of weeds similar to the silver Nightshade, like one of these plants?
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    There is a TON of data that can be measured & analyzed in a study like this. Easier to do in a less time-dependent way in the lab, but easier and more realistic (in vivo) to do if you have access to similar fields that are mowed and unmowed to differing extents. So many variables to examine and consider here for how plants may change physiologically based upon how we interact with them. This goes beyond that analogy I always use for fast evolution in Honors Biology: how dandelion populations become shorter based upon frequent mowing. This gets into the physiological responses. Very cool methinks.
Sean Nash

Traffic speeds decrease when bike lane is present | ScienceDaily - 0 views

  • Researchers conducting a study at a high-traffic intersection in a Jersey Shore town have found that the installation of a bike lane along the road approaching the convergence reduced driving speeds.
  • "We are giving you more evidence that bike lanes save lives,"
  • The research team started by creating a temporary bike lane on Cookman and Asbury Avenues on the side of the road heading toward the beach, delineating it with orange road cones.
    • Sean Nash
       
      Though you COULD NOT do something this manipulative, you COULD contact municipalities nearby and inquire about current and near-future efforts to install bike lanes... and THEN collect pre-and most traffic data in real-time. This would be quite feasible and super interesting. It would be all about doing the legwork to find where these design changes are being made, and of course the timing of it all.
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  • They found that the presence of the delineated bike lane made a difference: a 28 percent reduction in average maximum speeds and a 21 percent decrease in average speeds for vehicles turning right.
  • In addition, drivers moving at a perpendicular angle to the bike lane did not slow down.
  • With pedestrian deaths rising nationally, a study such as this could contribute to the development of new traffic policies or the reversal of older ones, Younes said.
nataliegomes

Crab's Brain Encodes Complex Memories | Scientific American - 1 views

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    Two reasons to like this one... both invertebrates & learning/behavioral science tend to be feasible areas for research at our level. Keep reading... more deeply AND more broadly.
Sean Nash

The Incomplete Guide to the Art of Discovery - 0 views

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    Link on the left here for free download of a PDF book about the nature of science, discovery, and research. This would make a great summer read!
Sean Nash

Study suggests 'biodegradable' teabags don't readily deteriorate in the environment and... - 0 views

  • The research looked at commonly available teabags made using three different compositions of polylactic acid (PLA), which is derived from sources such as corn starch or sugar cane.
  • The teabags were buried in soil for seven months, and a range of techniques were then used to assess whether -- and to what extent -- they had deteriorated.
  • The study also examined the impacts of the discs cut from the teabags on a species of earthworm, Eisenia fetida, which has a critical role in soil nutrient turnover as it consumes organic matter.
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  • Researchers found that being exposed to three different concentrations of teabag discs -- equivalent to the mass of half, one and two teabags -- resulted in up to 15% greater mortality, while some concentrations of PLA had a detrimental effect on earthworm reproduction.
  • It used analytical techniques such as size exclusion chromatography, nuclear magnetic resonance, and scanning electron microscopy allowing scientists to examine not just how the teabags had changed visibly but also structurally.
    • Sean Nash
       
      This sort of work could be done by visual analysis alone with a rubric of sorts, but once data is derived, reaching out to a local lab might provide access to some of these tools for a tighter analysis and an even more convincing project,
  • we've shown that when it is not properly disposed of, for example after seven months in the soil, its molecular structure remains intact
  • But it is with immense frustration that I see alternative and substitute materials entering the market without clear guidance on how their benefits might be realised. Even if consumers understand how to dispose of these products only around half of households in the UK currently have access to the necessary waste streams for the type of composting required.
  • It is essential we learn from the mistakes we made with plastic materials by testing and labelling these novel materials in relation to the prevailing waste management infrastructure.
    • Sean Nash
       
      Again, when you find a call for more research (aka: "learning" in this case) it is a good sign that you have found an area ripe for more work to be done.
  • "In this study PLA-based teabags did not fully deteriorate, and it seems that composting worms may be harmed by them. The lack of clear labelling can lead to consumers disposing of teabags in their compost, where any limit to complete degradation of the material raises the potential for plastics to enter the soil when compost is added to the garden, with potential impacts on garden wildlife and uptake by food plants."
Sean Nash

Scientists develop visual tool to help people group foods based on their levels of proc... - 0 views

  • Scientists studying ultra-processed foods have created a new tool for assessing the rewarding and reinforcing properties of foods that make up 58 percent of calories consumed in the United States. The foods have been linked to a wide range of negative health outcomes.
    • Sean Nash
       
      I couldn't locate this imageset and associated tools online, but I am willing to bet they might make it available to us, and the generation of more future research in this area is a key purpose of this work.
  • provides a collection of carefully curated images of minimally processed and ultra-processed foods matched on 26 characteristics, including macronutrients, sodium, dietary fiber, calories, price, and visual characteristics such as a color and portion size
    • Sean Nash
       
      Perhaps we just need to get the full journal article to get the raw materials (images) created and used.
  • The scale has its detractors. "A major criticism of the NOVA scale is that it's difficult to use or that foods are classified differently by different people," said Alexandra DiFeliceantonio, corresponding author and assistant professor at the Fralin Biomedical Research Institute. "We found that people with education in nutrition generally agreed on the food classifications, providing some data that it might not be a valid criticism."
    • Sean Nash
       
      See... this is the sort of thing I see as an opportunity. If the scale has detractors or isn't yet perfect, perhaps there is an opening here for a project. Perhaps there is even an opening to create something focused on teens (who I would argue are at most risk for the consumption of ultra-processed foods). This is an interesting area to me, not only behavioral science, but human diet in general.
  • ...7 more annotations...
  • To develop the picture set, a team of psychologists, neuroscientists, and registered dietitians selected foods to represent either minimally processed or ultra-processed foods.
  • The foods were prepared in a lab, visually represented through professional photography, and controlled for consistency. Researchers also gathered price, food weights, and nutritional information -- calories, macronutrients, sodium, and dietary fiber -- for the food in each image.
  • researchers recruited 67 nutrition professionals and asked them to classify the foods as minimally or ultra-processed
  • "There is very little experimental research on ultra-processed foods, and part of what's been holding us back is better tools for measuring and assessing their effects,"
    • Sean Nash
       
      Another big GREEN flag that this is an area ripe for new and creative approaches!
  • The Virginia Tech team is making the pictures and associated data accessible through the Virginia Tech Data Repository of the Virginia Tech University Libraries. This will allow scientists to test hypotheses in behavioral economic and neuroimaging studies.
    • Sean Nash
       
      This states that the images/research tools WILL BE MADE AVAILABLE (if not already). This is very cool. So, could the already-existing tool be leveraged in a novel way compared to what the researchers used it for, or does this provide somewhat of a template for someone to create a better or more-helpful tool perhaps for teens?
  • Story Source: Materials provided by Virginia Tech. Original written by Leigh Anne Kelley. Note: Content may be edited for style and length.
  • Journal Reference: Zach Hutelin, Monica Ahrens, Mary Elizabeth Baugh, Mary E. Oster, Alexandra L. Hanlon, Alexandra G. DiFeliceantonio. Creation and validation of a NOVA scored picture set to evaluate ultra-processed foods.. Appetite, 2024; 198: 107358 DOI: 10.1016/j.appet.2024.107358
Sean Nash

Foraging ants navigate more efficiently when given energy-drink-like doses of caffeine ... - 0 views

  • Ants who receive a caffeine-laced sugary reward become more efficient at navigating back to the reward's location compared to ants that only receive sugar. Researchers report on May 23 in the journal iScience that caffeinated ants move toward the reward via a more direct path but do not increase their speed, suggesting that caffeine improved their ability to learn.
  • "The idea with this project was to find some cognitive way of getting the ants to consume more of the poisonous baits we put in the field,"
  • it pushes them into having straighter paths and being able to reach the reward faster
  • ...7 more annotations...
  • Control efforts, which focus on using poisonous baits, have proven ineffective, likely due to low bait uptake and bait abandonment. The researchers wanted to test whether using caffeine, which has been shown to improve learning in honeybees and bumblebees, might improve the ants' ability to learn the bait location and guide their nestmates back there
  • The ants walked down a Lego drawbridge onto a testing platform -- an A4 sheet of paper overlaying an acrylic surface -- on which the researchers had placed a drop of sucrose solution laced with 0, 25 ppm, 250 ppm, or 2,000 ppm of caffeine
  • The lowest dose we used is what you find in natural plants, the intermediate dose is similar to what you would find in some energy drinks, and the highest amount is set to be the LD50 of bees -- where half the bees fed this dose die -- so it's likely to be quite toxic for them," says Galante.
  • Overall, they tested 142 ants, and each ant was tested four times
  • Foraging time dropped by 28% per visit for ants that received 25 ppm of caffeine and by 38% per visit for ants that received 250 ppm of caffeine, meaning that if an ant took 300 s in its first visit, by the final trial, it would be expected to take 113 s at the low caffeine dose and 54 s at the intermediate dose. This effect was not seen at the highest caffeine dose.
  • The researchers showed that caffeine lowered the ants' foraging times by making them more efficient, not by making them speedier. There was no effect of caffeine on the ants' pace at any dosage, but ants that received low to intermediate doses of caffeine trips traveled by less tortuous paths. "What we see is that they're not moving faster, they're just being more focused on where they're going," says Galante. "This suggests that they know where they want to go, therefore, they have learned the locations of the reward."
  • Henrique Galante, Massimo De Agrò, Alexandra Koch, Stefanie Kau, Tomer J. Czaczkes. Acute exposure to caffeine improves foraging in an invasive ant. iScience, 2024; 109935 DOI: 10.1016/j.isci.2024.109935
katherine-medina

Romanian Journal of Plant Protection Vol. VI (2013) - 0 views

  •  
    A paper on the application of a seaweeds macro-algae on a tomato plant that had been going through a drought.
Kylie John

World's largest hummingbird is actually two species | ScienceDaily - 0 views

  • "They are as different from each other as chimpanzees are from bonobos,"
    • Kylie John
       
      The article does not go into any more depth about the behavioural differences the two birds have. I wish it did.
Kylie John

Extreme solar storm generated aurorae-and 'surprise' | Science | AAAS - 0 views

  • Although this weekend’s storm didn’t appear to take out any satellites, it may shorten some of their life spans.
    • Kylie John
       
      I just find it interesting that these solar storms effect satellites
Kylie John

Nature's 3D printer: Bristle worms form bristles piece by piece | ScienceDaily - 1 views

  • Nature's 3D printer: Bristle worms form bristles piece by piece
  • The Raible group is currently working on improving the resolution of the observation in order to reveal even more details about bristle biogenesis.
Kylie John

Five Hormones that Control Plant Growth & Development - dummies - 2 views

  •  
    Just a SUPER basic overview of phytohormones. The + is that we can obtain ALL of these for use in pure form. The - is that you need to develop a unique question/experimental design.
Sean Nash

Bee body mass, pathogens and local climate influence heat tolerance - 1 views

  • "But few studies have examined biotic impacts, such as pathogen infection, on thermal tolerance in natural populations in combination with abiotic factors," she explained.
  • examined bee physical traits—such as sex differences in body mass—to understand how these traits interact with environmental conditions, pathogens and other factors
  • They found that variation in heat tolerance was influenced by size, sex and infection status of the bees. "Small-bodied, ectothermic—or cold-blooded—insects are considered to be highly vulnerable to changing climate because their ability to maintain proper body temperature depends on external conditions,"
  • ...3 more annotations...
  • researchers hypothesized that the bees' heat tolerance would increase with body size; that male heat tolerance would increase with ambient temperatures above ground whereas female heat tolerance would increase with sandier soils; and that parasite infection would reduce heat tolerance
  • To test these hypotheses, the researchers collected squash bees from 14 sites across Pennsylvania that varied in mean temperature, precipitation and soil texture. They measured individuals' critical thermal maximum—the temperature above which an organism cannot function—as a proxy for heat tolerance
  • Although both sexes showed a positive correlation between heat tolerance and size, male squash bees had a greater change in their critical thermal maximum per unit body mass than females, suggesting that there may be another biological trait influencing the impact of body mass on heat tolerance that differs between the sexes
  •  
    There is a strong feasibility element to this sort of work. Being invertebrates, there would be no problem collecting large numbers of bees from the environment for testing. Now... how that is typically done in other research studies... is something to dig into. The challenge here would be the observation/measurement of parasites (like the trypanosomes mentioned here). It might be worth digging into microdissection methods and techniques that others have reported on when working with pollinators and other small insects. It might not be impossible, even in our lab, but it would definitely be a (good) challenge and perhaps something we could find an expert to help us with.
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