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Giving unique and meaningful names to every human gene

biocurator.org is intended to give a stable web address for information and meetings relating to curation of biological data.

An international research consortium has been formed to create the most detailed and medically useful picture to date of human genetic variation. The 1000 Genomes Project will involve sequencing the genomes of at least a thousand people from around the world. The project will receive major support from the Wellcome Trust Sanger Institute in Hinxton, England, the Beijing Genomics Institute Shenzhen in China and the National Human Genome Research Institute (NHGRI), part of the National Institutes of Health (NIH).

Picturing to Learn (PtL) is founded on the following core premises: one From a student's perspective: undergraduate students can clarify their own understanding of scientific concepts and processes by creating drawings that explain these concepts to non-experts. two From a teacher's perspective: drawings can be useful as: * assessment tools, allowing instructors to identify students' scientific understanding and pinpoint their misconceptions * educational tools, to help inform instructors' lecture preparation

Academic Researcher Social Network

The National Center for Biomedical Ontology is a consortium of leading biologists, clinicians, informaticians, and ontologists who develop innovative technology and methods allowing scientists to create, disseminate, and manage biomedical information and knowledge in machine-processable form. Our visionis that all biomedical knowledge and data are disseminated on the Internet using principled ontologies, such that they are semantically interoperable and useful for improving biomedical science and clinical care. Our resources include the Open Biomedical Ontologies (OBO) library, the Open Biomedical Data (OBD) repositories, and tools for accessing and using this information in research. The Center collaborates with biomedical researchers conducting Driving Biological Projects to enable outside research and stimulate technology development in the Center. The Center undertakes outreach and educational activities (Biomedical Informatics Program) to train future researchers to use biomedical ontologies and related tools with the goal of enhancing scientific discovery.

Welcome to the biology portal. Biology, from the Greek words bios (life) and the suffix -ology, meaning study of, is a branch of science. It is concerned with the characteristics and behaviors of organisms, how species and individuals come into existence, and the interactions they have with each other and with their environment. Biology encompasses a broad spectrum of academic fields that are often viewed as independent disciplines. Together, they study life over a wide range of scales.

The Distributed Annotation System (DAS) defines a communication protocol used to exchange biological annotations. It is motivated by the idea that such annotations should not be provided by single centralized databases, but should instead be spread over multiple sites. Data distribution, performed by DAS servers, is separated from visualization, which is done by DAS clients. DAS is a client-server system in which a single client integrates information from multiple servers. It allows a single machine to gather up sequence annotation information from multiple distant web sites, collate the information, and display it to the user in a single view. Little coordination is needed among the various information providers. DAS is heavily used in the genome bioinformatics community. Over the last years we have also seen growing acceptance in the protein sequence and structure communities.

BioForge was created to encourage online collaborations between diverse research groups under BiOS-based licensing schemes. CAMBIA believes that enabling technologies in the life sciences need to remain available to anyone to improve or use in new innovations, both commercial and non-commercial.

Open Context features an innovative folksonomy system that will encourage individual users to add value to the information in Open Context. This powerful social software allows users to add meaningful tags (keywords) to data they discover in their searches.

A Semantic Map is kind of like a dictionary, in that it's a representation of Cognition's ability to define things. Cognition claims that its Semantic Map has over 10 million semantic connections; over 4 million semantic contexts (word meanings that create contexts for specific meanings of other related words); over 536,000 word senses (word and phrase meanings); 75,000 concept classes (or synonym classes of word meanings); 7,500 nodes in the technology's ontology or classification scheme; and 506,000 word stems (roots of words) for the English language.

Panda, an open source project, will let any site owner willing to do a little coding and integration work to allow user video uploads and playback. Think YouTube in a box. The software itself is free and will run on Amazon Web Services EC2, S3 and SimpleDB. You'll have to pay for the Amazon services, but this is a nice step forward from a variety of existing paid services out there like Zencoder, SesameVault and Hey!Watch. Panda handles all aspects of uploading, transcoding and streaming, handing things off to a Flash player like JW FLV Player by default.

Personal knowledge management is becoming one of the most critical skills that information workers like journalists, marketers and PR pros need to succeed today. Specifically, I am talking about the efficient collecting, processing and weeding of massive amounts of data. In this post I want to offer tips on how to take full advantage of tagging information in Gmail.

Here, we present a computational model that learns structures of many different forms and that discovers which form is best for a given dataset. The model makes probabilistic inferences over a space of graph grammars representing trees, linear orders, multidimensional spaces, rings, dominance hierarchies, cliques, and other forms and successfully discovers the underlying structure of a variety of physical, biological, and social domains. Our approach brings structure learning methods closer to human abilities and may lead to a deeper computational understanding of cognitive development.

Vannevar Bush's 1945 article, "As We May Think," has been much celebrated as a central inspiration for the development of hypertext and the World Wide Web. Less attention, however, has been paid to Bush's motivation for imagining a new generation of information technologies; it was his hope that more powerful tools, by automating the routine aspects of information processing, would leave researchers and other professionals more time for creative thought. But now, more than sixty years later, it seems clear that the opposite has happened, that the use of the new technologies has contributed to an accelerated mode of working and living that leaves us less to think, not more. In this talk I will explore how this state of affairs has come about and what we can do about it.

The OBO Foundry is a collaborative experiment involving developers of science-based ontologies who are establishing a set of principles for ontology development with the goal of creating a suite of orthogonal interoperable reference ontologies in the biomedical domain. The groups developing ontologies who have expressed an interest in this goal are listed below, followed by other relevant efforts in this domain.

ECOSPACE pursues the vision that by 2012 every Professional in Europe is empowered for seamless, dynamic and creative collaboration across teams, organisations and communities through a personalised collaborative working environment. ECOSPACE contributes to this vision through 4 main objectives: * The definition of innovative work paradigms through the analysis of eProfessionals and their related organisation. * The design and development of an open standards, service-oriented architecture for complementary and alike systems. * A collaboration middleware and services to enable seamless and instant collaboration among knowledge workers in group forming networks, beyond organisational boundaries. * The creation of new tools that simplify the complexity of collaboration in dynamic work environments and which enable users for creative and knowledge intensive tasks.