Group items tagged

One of the most surprising discoveries of modern physics is that objects aren't as separate as they may seem. When you drill down into the core of even the most solid-looking material, separateness dissolves. All that remains, like the smile of the Cheshire Cat from Alice in Wonderland, are relationships extending curiously throughout space and time.

The Semantic Web isn't just about putting data on the web. It is about making links, so that a person or machine can explore the web of data. With linked data, when you have some of it, you can find other, related, data. Like the web of hypertext, the web of data is constructed with documents on the web. However, unlike the web of hypertext, where links are relationships anchors in hypertext documents written in HTML, for data they links between arbitrary things described by RDF,. The URIs identify any kind of object or concept. But for HTML or RDF, the same expectations apply to make the web grow: 1. Use URIs as names for things 2. Use HTTP URIs so that people can look up those names. 3. When someone looks up a URI, provide useful information. 4. Include links to other URIs. so that they can discover more things.

SMORE is a tool that allows users to markup their documents in RDF using web ontologies in association with user-specific terms and elements. The aim of this software is as follows: To provide the user with a flexible environment in which he can create his web page without too many hindrances involving markup To allow the user to markup his document with minimal knowledge of RDF terms and syntax. However, the user should be able to semantically classify his data set for annotation i.e. breakup sentences into the basic subject-predicate-object model To provide a reference to existing ontologies on the Internet in order to use more precise references in his own web page/text. The user can also create his own ontology from scratch and borrow terms from existing ontologies To ensure accurate and complete RDF markup with scope to make modifications easily

ECOSPACE pursues the vision that by 2012 every Professional in Europe is empowered for seamless, dynamic and creative collaboration across teams, organisations and communities through a personalised collaborative working environment. ECOSPACE contributes to this vision through 4 main objectives: * The definition of innovative work paradigms through the analysis of eProfessionals and their related organisation. * The design and development of an open standards, service-oriented architecture for complementary and alike systems. * A collaboration middleware and services to enable seamless and instant collaboration among knowledge workers in group forming networks, beyond organisational boundaries. * The creation of new tools that simplify the complexity of collaboration in dynamic work environments and which enable users for creative and knowledge intensive tasks.

Drug Ontology is developed by the nosology project at Stanford Center for Biomedical Informatics Research. This project seeks to discover new therapeutic uses and adverse effects of drugs by finding diseases that have gene expression profiles similar to those of the known indications and adverse effects of drugs. The objectives of the Drug Ontology are: * defines a core set of concepts and relationships that allow us to integrate information from multiple sources, * provides classification services along multiple axes, * provides links to external sources so that data not in the ontology can be queried from these sources.

myExperiment is a collaborative environment where scientists can safely publish their workflows, share them with groups and find the workflows of others. Workflows, other digital objects and collections - called Packs - can now be swapped, sorted and searched like photos and videos on the Web. And unlike Facebook or MySpace, myExperiment fully understands the needs of the researcher. myExperiment makes it really easy for the next generation of scientists to contribute to a pool of scientific workflows, build communities and form relationships. It enables scientists to share, reuse and repurpose workflows and reduce time-to-experiment, share expertise and avoid reinvention.

Systems Biology Linker (Sybil) is a platform for the integration of BioPAX and SBML. It is part of the Virtual Cell but also a useful tool for any SBML and BioPAX integration, in other words for any one who wants to use BioPAX with an SBML-capable platform or vice versa. While Sybil can be used as an intelligent conversion tool between SBML and BioPAX, it is primarily intended for building a joint repository for SBML and BioPAX data, where links between SBML elements and BioPAX objects are maintained by SBPAX. Sybil uses SYBREAM for most of the intelligent work involved in building the SBML-SBPAX-BioPAX joint repository.

Group sensemaking strikes me as more like science, if it isn't 'meta-science'. In other words, we want to make sense we all agree on that isn't just another kind of ideology or dogma, but based on objective reality. Where science, or at least the reductive approach, aggregates facts and data, sensemaking, like integrative methods, puts the facts into context with a larger environment. Sensemaking, in my view, is about understanding reality sufficiently well that one feels comfortable making statements about the future. That is, not necessarily making predictions, but anticipating future possibilities based on understanding how the world works.

Europeana - the European digital library, museum and archive - is a 2-year project that began in July 2007. It will produce a prototype website giving users direct access to some 2 million digital objects, including film material, photos, paintings, sounds, maps, manuscripts, books, newspapers and archival papers. The prototype will be launched in November 2008 by Viviane Reding, European Commissioner for Information Society and Media.

Virtual worlds are governed not only by the source code used to develop the world, but also by civil code documents that establish a governance structure that constrains the interactions of users of the virtual world and regulates relationships among stakeholders of the virtual world. While previous research has examined specific aspects of these documents, this paper analyzes these governing documents as a totality. By examining the totality of and the interplay among the governing documents of a number of established social worlds, this paper seeks to discover insights that can prove valuable both for scholarly understanding of social world governance and for the various stakeholders of social worlds. Following this analysis, the paper offers a set of policy recommendations and considerations to facilitate the development of governing documents that more democratically and equally serve the needs and rights of all stakeholders in virtual worlds. The paper concludes that virtual worlds and their governing documents are boundary objects with agency, in that they are the result of interactions among stakeholder groups and in turn reshape the relationships among those stakeholder groups.

Primary Objectives * Build a demo that spans from bench to bedside using RDF and OWL. * Explore the effectiveness of current tools. * Document our finding to help accelerate adoption of the Semantic Web.

IkeWiki is a new kind of Wiki (a Semantic Wiki ) developed by SalzburgResearch that allows users to annotate pages and links between pages with semantic annotations. Such annotations are useful because they give machines a certain amount of "understanding" of the content that goes beyond merely displaying the page. This information can then e.g. be used for context-specific presentation of pages, advanced querying, consistency verification or drawing conclusions. Currently, IkeWiki can make use of some of the knowledge represented in RDFS and OWL schemas to display enhanced navigation tools. Furthermore, we implemented a sample "biology ontology" that automatically displays a taxonomy box for biological objects. Although IkeWiki looks and behaves like Wikipedia/MediaWiki in many aspects, it is a complete rewrite, and the system design significantly differs from other Wikis. IkeWiki makes full use of Semantic Web technologies like RDF(S) and OWL using the Jena RDF store, and is implemented as an AJAX-based Rich Internet Application, based on the Dojo Toolkit

BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It includes objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic programming toolkit.

GUESS is an exploratory data analysis and visualization tool for graphs and networks. The system contains a domain-specific embedded language called Gython (an extension of Python, or more specifically Jython) which supports the operators and syntactic sugar necessary for working on graph structures in an intuitive manner. An interactive interpreter binds the text that you type in the interpreter to the objects being visualized for more useful integration. GUESS also offers a visualization front end that supports the export of static images and dynamic movies.

Integrate. Relate. Infer. Share. IRIS is a semantic desktop application framework that enables users to create a "personal map" across their office-related information objects. IRIS includes a machine-learning platform to help automate this process. It provides "dashboard" views, contextual navigation, and relationship-based structure across an extensible suite of office applications, including a calendar, web and file browser, e-mail client, and instant messaging client.

The project's major objective is enriching the toolkit used for the assessment of the impact of scholarly communication items, and hence of scholars, with metrics that derive from usage data. mesur

Federating Distributed Social Data to Build an Interlinked Online Information Society

Rapid advances in information technologies continue to drive a flood of data and analysis techniques in ecological and environmental sciences. Using these resources more effectively and taking advantage of associated cross-disciplinary research opportunities poses a major challenge to both scientists and information technologists. These challenges are now being addressed in projects that apply knowledge representation and Semantic Web technologies to problems in discovering and integrating ecological data and data analysis techniques. In this paper, we present an overview of the major ontological components of our project, SEEK ("Science Environment for Ecological Knowledge"). We describe the concepts and models that are represented in each, and present a discussion of potential applications of these ontologies on the Semantic Web

This talk is an essay on design. In the 16th century, Michel de Montaigne invented a new genre of writing he called an essai, which in modern French translates to attempt. Since then, the best essays have been explorations by an author of a topic or question, perhaps or probably without a definitive conclusion. Certainly in a good essay there can be no theme or conclusion stated at the outset, repeated several times, and supported throughout, because a true essay takes the reader on the journey of discovery that the author has or is experiencing. This essay-on design-is based on my reflections on work I've done over the past 3 years. Some of that work has been on looking at what constitutes an "ultra large scale software system" and some on researching how to keep a software system operating in the face of internal and external errors and unexpected conditions.

Multi-ontology sense making a new simplicity in decision making