Group items tagged

1 page summaries of different lines of evidence for evolution from Nature

Almost every cell in your body has the same DNA sequence. So how come a heart cell is different from a brain cell? Cells use their DNA code in different ways, depending on their jobs. Just like orchestras can perform one piece of music in many different ways. A cell's combined set of changes in gene expression is called its epigenome. This week Nature publishes a slew of new data on the epigenomic landscape in lots of different cells. Learn how epigenomics works in this video. Read the latest research on epigenetics at http://www.nature.com/epigenomeroadmap

The behavior of a person's genes doesn't just depend on the genes' DNA sequence - it's also affected by so-called epigenetic factors. Changes in these factors can play a critical role in disease.

Animal model remyelination study

A package of papers investigates the functional regulatory elements in genomes that have been obtained from human tissue samples and cell lines. The implications of the project are presented here from three viewpoints. 

From the following article: The velocity of climate change Scott R. Loarie, Philip B. Duffy, Healy Hamilton, Gregory P. Asner, Christopher B. Field & David D. Ackerly Nature 462, 1052-1055(24 December 2009) doi:10.1038/nature08649

A phylogenetic tree, also known as a phylogeny, is a diagram that depicts the lines of evolutionary descent of different species, organisms, or genes from a common ancestor. Phylogenies are useful for organizing knowledge of biological diversity, for structuring classifications, and for providing insight into events that occurred during evolution. Furthermore, because these trees show descent from a common ancestor, and because much of the strongest evidence for evolution comes in the form of common ancestry, one must understand phylogenies in order to fully appreciate the overwhelming evidence supporting the theory of evolution.

Almost every cell in the human body has the same DNA sequence. So why is a heart cell different from a brain cell? Cells use their DNA code in different ways, depending on their jobs - just as the orchestra in this video can perform one piece of music in many different ways. The combination of changes in gene expression in a cell is called its epigenome

Despite clinical and experimental evidence implicating the intestinal microbiota in a number of brain disorders, its impact on Alzheimer's disease is not known.

At the annual meeting of the American Association for Cancer Research in Washington DC this week, Wolchok and other researchers will report on their search for immunotherapy markers - ways to predict a patient's response to an immunotherapy or to show whether a given treatment is working. The work is hampered by the complexity of the immune system, but early results are converging on one point: that patients' own immune responses to cancer are crucial in determining outcomes.

Since their development in the mid-1990s, DNA microarrays have become a key tool in the fight against cancer. But just how do they help diagnose and treat patients?  Article with related links

Of two genetically identical mice, how can one be small and another fat? Research on epigenetic changes resulting from the environment can give us clues into obesity in mice--and humans.

The external environment's effects upon genes can influence disease, and some of these effects can be inherited in humans. Studies investigating how environmental factors impact the genetics of an individual's offspring are difficult to design. However, in certain parts of the world in which social systems are highly centralized, environmental information that might have influenced families can be obtained. For example, Swedish scientists recently conducted investigations examining whether nutrition affected the death rate associated with cardiovascular disease and diabetes and whether these effects were passed from parents to their children and grandchildren (Kaati et al., 2002). These researchers estimated how much access individuals had to food by examining records of annual harvests and food prices in Sweden across three generations of families, starting as far back as the 1890s. These researchers found that if a father did not have enough food available to him during a critical period in his development just before puberty, his sons were less likely to die from cardiovascular disease. Remarkably, death related to diabetes increased for children if food was plentiful during this critical period for the paternal grandfather, but it decreased when excess food was available to the father. These findings suggest that diet can cause changes to genes that are passed down though generations by the males in a family, and that these alterations can affect susceptibility to certain diseases. But what are these changes, and how are they remembered? The answers to questions such as these lie in the concept of epigenetics.

Almost every cell in the human body has the same DNA sequence. So why is a heart cell different from a brain cell? Cells use their DNA code in different ways, depending on their jobs - just as the orchestra in this video can perform one piece of music in many different ways. The combination of changes in gene expression in a cell is called its epigenome.

Lyme disease, Ebola and malaria all developed in animals before making the leap to infect humans. Predicting when such a 'zoonotic' disease will spark an outbreak remains difficult, but a new study suggests that artificial intelligence could give these efforts a boost. A computer model that incorporates machine learning can pinpoint, with 90% accuracy, rodent species that are known to harbour pathogens that can spread to humans, researchers report this week in the Proceedings of the National Academy of Sciences1. The model also identified more than 150 species that are likely to be disease reservoirs but have yet to be confirmed as such.

The cellular life cycle, also called the cell cycle, includes many processes necessary for successful self-replication. Beyond carrying out the tasks of routine metabolism, the cell must duplicate its components - most importantly, its genome - so that it can physically split into two complete daughter cells. The cell must also pass through a series of checkpoints that ensure conditions are favorable for division.

10:47 animation with text

How did viruses evolve? Are they a streamlined form of something that existed long ago, or an ultimate culmination of smaller genetic elements joined together?

Questions about the nature of viruses remain quite vexing. Recent studies of the giant Mimivirus illustrate this point. Its large size and correspondingly large genome test our general ideas of viruses as small, simple entities. The existence of genes associated with translation, metabolism, DNA repair, and protein folding raises questions about the evolutionary history of viruses. Further studies of this virus, and the search for other giant viruses, may shed light on these issues.

Researchers have made dramatic inroads into the study of polygenic and other complex human diseases, due in large part to knowledge of the human genome sequence, the generation of widespread markers of genetic variation, and the development of new technologies that allow investigators to associate disease phenotypes with genetic loci. Although polygenic diseases are more common than single-gene disorders, studies of monogenic diseases provide an invaluable opportunity to learn about underlying molecular mechanisms, thereby contributing a great deal to our understanding of all forms of genetic disease.