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Luís F. Simões

Self-assembly of nano-rotors - 1 views

  • the coveted dream of using self-organization effects in such a way that nano machines assemble themselves is still a thing of the future. The rotors developed in Garching are an important step in this direction.
tvinko

Massively collaborative mathematics : Article : Nature - 28 views

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    peer-to-peer theorem-proving
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    Or: mathematicians catch up with open-source software developers :)
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    "Similar open-source techniques could be applied in fields such as [...] computer science, where the raw materials are informational and can be freely shared online." ... or we could reach the point, unthinkable only few years ago, of being able to exchange text messages in almost real time! OMG, think of the possibilities! Seriously, does the author even browse the internet?
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    I do not agree with you F., you are citing out of context! Sharing messages does not make a collaboration, nor does a forum, .... You need a set of rules and a common objective. This is clearly observable in "some team", where these rules are lacking, making team work inexistent. The additional difficulties here are that it involves people that are almost strangers to each other, and the immateriality of the project. The support they are using (web, wiki) is only secondary. What they achieved is remarkable, disregarding the subject!
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    I think we will just have to agree to disagree then :) Open source developers have been organizing themselves with emails since the early '90s, and most projects (e.g., the Linux kernel) still do not use anything else today. The Linux kernel mailing list gets around 400 messages per day, and they are managing just fine to scale as the number of contributors increases. I agree that what they achieved is remarkable, but it is more for "what" they achieved than "how". What they did does not remotely qualify as "massively" collaborative: again, many open source projects are managed collaboratively by thousands of people, and many of them are in the multi-million lines of code range. My personal opinion of why in the scientific world these open models are having so many difficulties is that the scientific community today is (globally, of course there are many exceptions) a closed, mostly conservative circle of people who are scared of changes. There is also the fact that the barrier of entry in a scientific community is very high, but I think that this should merely scale down the number of people involved and not change the community "qualitatively". I do not think that many research activities are so much more difficult than, e.g., writing an O(1) scheduler for an Operating System or writing a new balancing tree algorithm for efficiently storing files on a filesystem. Then there is the whole issue of scientific publishing, which, in its current form, is nothing more than a racket. No wonder traditional journals are scared to death by these open-science movements.
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    here we go ... nice controversy! but maybe too many things mixed up together - open science journals vs traditional journals, conservatism of science community wrt programmers (to me one of the reasons for this might be the average age of both groups, which is probably more than 10 years apart ...) and then using emailing wrt other collaboration tools .... .... will have to look at the paper now more carefully ... (I am surprised to see no comment from José or Marek here :-)
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    My point about your initial comment is that it is simplistic to infer that emails imply collaborative work. You actually use the word "organize", what does it mean indeed. In the case of Linux, what makes the project work is the rules they set and the management style (hierachy, meritocracy, review). Mailing is just a coordination mean. In collaborations and team work, it is about rules, not only about the technology you use to potentially collaborate. Otherwise, all projects would be successful, and we would noy learn management at school! They did not write they managed the colloboration exclusively because of wikipedia and emails (or other 2.0 technology)! You are missing the part that makes it successful and remarkable as a project. On his blog the guy put a list of 12 rules for this project. None are related to emails, wikipedia, forums ... because that would be lame and your comment would make sense. Following your argumentation, the tools would be sufficient for collaboration. In the ACT, we have plenty of tools, but no team work. QED
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    the question on the ACT team work is one that is coming back continuously and it always so far has boiled down to the question of how much there need and should be a team project to which everybody inthe team contributes in his / her way or how much we should leave smaller, flexible teams within the team form and progress, more following a bottom-up initiative than imposing one from top-down. At this very moment, there are at least 4 to 5 teams with their own tools and mechanisms which are active and operating within the team. - but hey, if there is a real will for one larger project of the team to which all or most members want to contribute, lets go for it .... but in my view, it should be on a convince rather than oblige basis ...
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    It is, though, indicative that some of the team member do not see all the collaboration and team work happening around them. We always leave the small and agile sub-teams to form and organize themselves spontaneously, but clearly this method leaves out some people (be it for their own personal attitude or be it for pure chance) For those cases which we could think to provide the possibility to participate in an alternative, more structured, team work where we actually manage the hierachy, meritocracy and perform the project review (to use Joris words).
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    I am, and was, involved in "collaboration" but I can say from experience that we are mostly a sum of individuals. In the end, it is always one or two individuals doing the job, and other waiting. Sometimes even, some people don't do what they are supposed to do, so nothing happens ... this could not be defined as team work. Don't get me wrong, this is the dynamic of the team and I am OK with it ... in the end it is less work for me :) team = 3 members or more. I am personally not looking for a 15 member team work, and it is not what I meant. Anyway, this is not exactly the subject of the paper.
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    My opinion about this is that a research team, like the ACT, is a group of _people_ and not only brains. What I mean is that people have feelings, hate, anger, envy, sympathy, love, etc about the others. Unfortunately(?), this could lead to situations, where, in theory, a group of brains could work together, but not the same group of people. As far as I am concerned, this happened many times during my ACT period. And this is happening now with me in Delft, where I have the chance to be in an even more international group than the ACT. I do efficient collaborations with those people who are "close" to me not only in scientific interest, but also in some private sense. And I have people around me who have interesting topics and they might need my help and knowledge, but somehow, it just does not work. Simply lack of sympathy. You know what I mean, don't you? About the article: there is nothing new, indeed. However, why it worked: only brains and not the people worked together on a very specific problem. Plus maybe they were motivated by the idea of e-collaboration. No revolution.
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    Joris, maybe I made myself not clear enough, but my point was only tangentially related to the tools. Indeed, it is the original article mention of "development of new online tools" which prompted my reply about emails. Let me try to say it more clearly: my point is that what they accomplished is nothing new methodologically (i.e., online collaboration of a loosely knit group of people), it is something that has been done countless times before. Do you think that now that it is mathematicians who are doing it makes it somehow special or different? Personally, I don't. You should come over to some mailing lists of mathematical open-source software (e.g., SAGE, Pari, ...), there's plenty of online collaborative research going on there :) I also disagree that, as you say, "in the case of Linux, what makes the project work is the rules they set and the management style (hierachy, meritocracy, review)". First of all I think the main engine of any collaboration like this is the objective, i.e., wanting to get something done. Rules emerge from self-organization later on, and they may be completely different from project to project, ranging from almost anarchy to BDFL (benevolent dictator for life) style. Given this kind of variety that can be observed in open-source projects today, I am very skeptical that any kind of management rule can be said to be universal (and I am pretty sure that the overwhelming majority of project organizers never went to any "management school"). Then there is the social aspect that Tamas mentions above. From my personal experience, communities that put technical merit above everything else tend to remain very small and generally become irrelevant. The ability to work and collaborate with others is the main asset the a participant of a community can bring. I've seen many times on the Linux kernel mailing list contributions deemed "technically superior" being disregarded and not considered for inclusion in the kernel because it was clear that
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    hey, just catched up the discussion. For me what is very new is mainly the framework where this collaborative (open) work is applied. I haven't seen this kind of working openly in any other field of academic research (except for the Boinc type project which are very different, because relying on non specialists for the work to be done). This raise several problems, and mainly the one of the credit, which has not really been solved as I read in the wiki (is an article is written, who writes it, what are the names on the paper). They chose to refer to the project, and not to the individual researchers, as a temporary solution... It is not so surprising for me that this type of work has been first done in the domain of mathematics. Perhaps I have an ideal view of this community but it seems that the result obtained is more important than who obtained it... In many areas of research this is not the case, and one reason is how the research is financed. To obtain money you need to have (scientific) credit, and to have credit you need to have papers with your name on it... so this model of research does not fit in my opinion with the way research is governed. Anyway we had a discussion on the Ariadnet on how to use it, and one idea was to do this kind of collaborative research; idea that was quickly abandoned...
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    I don't really see much the problem with giving credit. It is not the first time a group of researchers collectively take credit for a result under a group umbrella, e.g., see Nicolas Bourbaki: http://en.wikipedia.org/wiki/Bourbaki Again, if the research process is completely transparent and publicly accessible there's no way to fake contributions or to give undue credit, and one could cite without problems a group paper in his/her CV, research grant application, etc.
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    Well my point was more that it could be a problem with how the actual system works. Let say you want a grant or a position, then the jury will count the number of papers with you as a first author, and the other papers (at least in France)... and look at the impact factor of these journals. Then you would have to set up a rule for classifying the authors (endless and pointless discussions), and give an impact factor to the group...?
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    it seems that i should visit you guys at estec... :-)
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    urgently!! btw: we will have the ACT christmas dinner on the 9th in the evening ... are you coming?
Marcus Maertens

Gadget Genius - nanotechnology breakthrough is big deal for electronics : The Universit... - 2 views

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    Quote: "This is exactly what we are pursuing - self-assembling materials that organize at smaller sizes, say, less than 20 or even 10 nanometers"
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    Direct Self-Assembly (DSA) is one of the competitors for the next-generation 'lithography' together with direct-write via electron beam and the more traditional extreme UV (EUV) lithography. Although there are huge benefits to use DSA, the technology does have some drawbacks when it comes to line edge roughness. It seems however particularly good for repetitive structures that are used in memory chips. As long as EUV is struggling to get it working, DSA definitely has a fighting chance to enter the market one day.
Tobias Seidl

Journal of the Royal Society Interface - Focus: Synthetic Biology - 0 views

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    A toc of a spcial issue on synthetic biology: How to assemble organisms from scratch. Could one day be intersting for large scale deterministic self assembly or some other crazy idea...
Tom Gheysens

Programmable glue made of DNA directs tiny gel bricks to self-assemble | KurzweilAI - 3 views

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    New method could help to reconnect injured organs or build functional human tissues from the ground up
Francesco Biscani

DIRECT - Wikipedia, the free encyclopedia - 0 views

  • DIRECT is a proposed alternative Shuttle-Derived Launch Vehicle architecture supporting NASA's Vision for Space Exploration, which would replace the space agency's planned Ares I and Ares V rockets with a family of launch vehicles named "Jupiter."
  • DIRECT is advocated by a group of space enthusiasts that asserts it represents a broader team of dozens of NASA and space industry engineers who actively work on the proposal on an anonymous, volunteer basis in their spare time.
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    Just read about this, it looks like an interesting example of bottom-up innovation and self-organization.
ESA ACT

Technology Review: Managing Energy with Swarm Logic - 0 views

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    Self-organizing equipment could cut energy bills.
Thijs Versloot

A Groundbreaking Idea About Why Life Exists - 1 views

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    Jeremy England, a 31-year-old assistant professor at the Massachusetts Institute of Technology, has derived a mathematical formula that he believes explains this capacity. The formula, based on established physics, indicates that when a group of atoms is driven by an external source of energy (like the sun or chemical fuel) and surrounded by a heat bath (like the ocean or atmosphere), it will often gradually restructure itself in order to dissipate increasingly more energy. This could mean that under certain conditions, matter inexorably acquires the key physical attribute associated with life. The simulation results made me think of Jojo's attempts to make a self-assembling space structure. Seems he may have been on the right track, just not thinking big enough
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    :-P Thanks Thijs... I do not agree with the premise of the article that a possible correlation of energy dissipation in living systems and their fitness means that one is the cause for the other - it may just be that both go hand-in-hand because of the nature of the world that we live in. Maybe there is such a drive for pre-biotic systems (like crystals and amino acids), but once life as we know it exists (i.e., heredity + mutation) it is hard to see the need for an amendment of Darwin's principles. The following just misses the essence of Darwin: "If England's approach stands up to more testing, it could further liberate biologists from seeking a Darwinian explanation for every adaptation and allow them to think more generally in terms of dissipation-driven organization. They might find, for example, that "the reason that an organism shows characteristic X rather than Y may not be because X is more fit than Y, but because physical constraints make it easier for X to evolve than for Y to evolve." Darwin's principle in its simplest expression just says that if a genome is more effective at reproducing it is more likely to dominate the next generation. The beauty of it is that there is NO need for a steering mechanism (like maximize energy dissipation) any random set of mutations will still lead to an increase of reproductive effectiveness. BTW: what does "better at dissipating energy" even mean? If I run around all the time I will have more babies? Most species that prove to be very successful end up being very good at conserving energy: trees, turtles, worms. Even complexity of an organism is not a recipe for evolutionary success: jellyfish have been successful for hundreds of millions of years while polar bears are seem to be on the way out.
Luís F. Simões

Inferring individual rules from collective behavior - 2 views

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    "We fit data to zonal interaction models and characterize which individual interaction forces suffice to explain observed spatial patterns." You can get the paper from the first author's website: http://people.stfx.ca/rlukeman/research.htm
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    PNAS? Didnt strike me as sth very new though... We should refer to it in the roots study though: "Social organisms form striking aggregation patterns, displaying cohesion, polarization, and collective intelligence. Determining how they do so in nature is challenging; a plethora of simulation studies displaying life-like swarm behavior lack rigorous comparison with actual data because collecting field data of sufficient quality has been a bottleneck." For roots it is NO bottleneck :) Tobias was right :)
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    Here they assume all relevant variables influencing behaviour are being observed. Namely, the relative positions and orientations of all ducks in the swarm. So, they make movies of the swarm's movements, process them, and them fit the models to that data. In the roots, though we can observe the complete final structure, or even obtain time-lapse movies showing how that structure came out to be, getting the measurements of all relevant soil variables (nitrogen, phosphorus, ...) throughout the soil, and over time, would be extremely difficult. So I guess a replication of the kind of work they did, but for the roots, would be hard. Nice reference though.
Tobias Seidl

Self-assembled artificial cilia - PNAS - 1 views

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    Cilia are hairs driven by molecular motors. They are found in monocellular organisms, etc. If we can build such things artificially, we have micro-pumps etc. Any space usability?
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    carlo's distributed actuator study originally considered cilia as well as peristaltic motion if i remember right. i suppose you might still think about debris transport for digging applications. Originally there was an idea for thermal transport aswell which, it turns out, was bollocks.
jcunha

Maze-solving automatons can repair broken circuits - 1 views

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    Researchers in Bangalore, India together with the Indian Space Research organization come up with an intelligent self-healing algorithm that can locate open-circuits faults and repair them in real-time. They used an insulating silicon oil containing conductive particles. Whenever a fault happens, an electric field develops there, causing the fluid to move in a 'thermodynamic automaton' way repairing the fault. The researchers make clear it could be one advantage for electronics in harsh environments, such as in space satellites.
Francesco Biscani

Apple's Mistake - 5 views

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    Nice opinion piece.
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    nice indeed .... especially like: "They make such great stuff, but they're such assholes. Do I really want to support this company? Should Apple care what people like me think? What difference does it make if they alienate a small minority of their users? There are a couple reasons they should care. One is that these users are the people they want as employees. If your company seems evil, the best programmers won't work for you. That hurt Microsoft a lot starting in the 90s. Programmers started to feel sheepish about working there. It seemed like selling out. When people from Microsoft were talking to other programmers and they mentioned where they worked, there were a lot of self-deprecating jokes about having gone over to the dark side. But the real problem for Microsoft wasn't the embarrassment of the people they hired. It was the people they never got. And you know who got them? Google and Apple. If Microsoft was the Empire, they were the Rebel Alliance. And it's largely because they got more of the best people that Google and Apple are doing so much better than Microsoft today. Why are programmers so fussy about their employers' morals? Partly because they can afford to be. The best programmers can work wherever they want. They don't have to work for a company they have qualms about. But the other reason programmers are fussy, I think, is that evil begets stupidity. An organization that wins by exercising power starts to lose the ability to win by doing better work. And it's not fun for a smart person to work in a place where the best ideas aren't the ones that win."
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    Poor programmers can complain, but they will keep developing applications for iPhone as long as their bosses will tell them to do so... From my experience in mobile software development I assure you it's not the pain of the programmer that dictates what is done, but the customer's demand. Even though like this the quality of applications is somewhat worse than it could be, clients won't complain as they have no reference point. And things will stay as they are: apple censoring the applications, clients paying for stuff that "sometimes just does not work" (it's normal, isn't it??), and programmers complaining, but obediently making iPhone apps...
LeopoldS

Self-organized adaptation of a simple neural circuit enables complex robot behaviour : ... - 3 views

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    is this really worth a nature paper??
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    Funny to read this question exactly from you, the all and ever fan of anything linked to bio :-) I have read worse papers in nature and in addition it's just "Nature physics", viz. "Nature garbage." Could be that they don't find enough really good stuff to publish in all their topical clones of Nature.
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    francesco already posted this below
Luzi Bergamin

[0810.3179] The Enlightened Game of Life - 3 views

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    Revised version of a 2008 paper. Pretty crazy title and perhaps crazy content...
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    the abstract sounds like a random generated paper...
Francesco Biscani

The Cathedral and the Bazaar - 7 views

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    Albeit a bit dated, this is the classical Eric Raymond paper about the self-organizing open source model (the bazaar) compared to the usual closed software development model (the cathedral). Is science today more a bazaar or a cathedral?
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    funny .... this is exactly the book that Franco mentioned during one of the first meetings I had with him on the ACT, our research, how to organise, the potential of new ways of cooperating etc ...
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    Science today is a Basilica.
jaihobah

A Brain Built From Atomic Switches Can Learn - 0 views

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    A tiny self-organized mesh full of artificial synapses recalls its experiences and can solve simple problems. Its inventors hope it points the way to devices that match the brain's energy-efficient computing prowess.
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