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Competitive interactions between corals and macroalgae play an important role in determining benthic community structure on coral reefs. While it is known that macroalgae may negatively affect corals, the relative influence of contact- versus water-mediated macroalgal interactions on corals - such as via an influence on coral-associated microbiomes - is less well understood. Further, the impacts of macroalgae on corals that have persisted in a heavily urbanized reef system have not been explored previously. We examined the effects of the macroalgae Lobophora sp. and Hypnea pannosa on the physiology and microbiome of three Indo-Pacific coral species (Merulina ampliata, Montipora stellata, and Pocillopora acuta) collected from two reefs in Singapore (Pulau Satumu and Kusu Island), and compared how these effects varied between direct contact and water-mediated interactions. Direct contact by Lobophora sp. caused visible tissue bleaching and reduced maximum quantum yield (Fv/Fm) in all three coral species, while direct contact by H. pannosa only led to slight, but significant, suppression of Fv/Fm. No detrimental effects on coral physiology were observed when corals were in close proximity to the macroalgae or when in direct contact with algal mimics. However, both direct contact and water-mediated interactions with Lobophora sp. and H. pannosa altered the prokaryotic community structures in M. stellata. For M. ampliata and P. acuta, the changes in their microbiomes in response to algal treatments were more strongly influenced by the source reefs from which the coral colonies were collected. In particular, coral colonies collected from Kusu Island had proportionately more initial abundances of potentially pathogenic bacteria in their microbiomes than those collected from Pulau Satumu; nevertheless, coral fragments from Kusu Island had the same physiological responses to macroalgal interactions as corals from Pulau Satumu. Overall, our results reveal that, for the sp

Tropical shallow-water habitats represent the marine environments with the greatest biodiversity; however, these habitats are the most vulnerable to climate warming. Corals, seagrasses, and macroalgae play a crucial role in the structure, functions, and processes of the coastal ecosystems. Understanding their growth and physiological responses to elevated temperature and interspecific sensitivity is a necessary step to predict the fate of future coastal community. Six species representatives, including Pocillopora acuta, Porites lutea, Halophila ovalis, Thalassia hemprichii, Padina boryana, and Ulva intestinalis, collected from Phuket, Thailand, were subjected to stress manipulation for 5 days. Corals were tested at 27, 29.5, 32, and 34.5°C, while seagrasses and macroalgae were tested at 27, 32, 37, and 42°C. After the stress period, the species were allowed to recover for 5 days at 27°C for corals and 32°C for seagrasses and macroalgae. Non-destructive evaluation of photosynthetic parameters (Fv/Fm, Fv/F0, ϕPSII and rapid light curves) was carried out on days 0, 3, 5, 6, 8, and 10. Chlorophyll contents and growth rates were quantified at the end of stress, and recovery periods. An integrated biomarker response (IBR) approach was adopted to integrate the candidate responses (Fv/Fm, chlorophyll content, and growth rate) and quantify the overall temperature effects. Elevated temperatures were found to affect photosynthesis, chlorophyll content, and growth rates of all species. Lethal effects were detected at 34.5°C in corals, whereas adverse but recoverable effects were detected at 32°C. Seagrasses and macroalgae displayed a rapid decline in photosynthesis and lethal effects at 42°C. In some species, sublethal stress manifested as slower growth and lower chlorophyll content at 37°C, while photosynthesis remained unaffected. Among all, T. hemprichii displayed the highest thermotolerance. IBR provided evidence that elevated temperature affected the overall perf