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Ivan Pavlov

How did complex life evolve? The answer could be inside out - 0 views

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    David Baum, University of Wisconsin, says: "All agree that eukaryotes arose from a symbiotic relationship between two cell types: bacteria that became mitochondria and a host cell, archaea, or a close relative of archaea, that became the cytoplasm and nucleus. This symbiosis explains the origin of mitochondria, but what about other eukaryotic structures, most notably the nucleus?" The Baums' inside-out theory provides a gradual path by which eukaryotic cells could have evolved. The first stage began with a bacterial cell whose outer membrane forms protrusions, which the Baums call 'blebs', that reached out from the cell. These protrusions trapped free-living mitochondria-like bacteria between them. Using the energy gained from being in close contact with bacteria (and using bacterial-derived lipids), cells were able to get bigger and expand the size of their blebs. The sides of the blebs formed the endoplasmic reticulum and their inner surfaces formed the outer membrane of the nucleus, with the original outer membrane of the archaeon becoming what we now call the inner nuclear membrane. Finally, the fusion of blebs with one another led to the formation of the plasma membrane. The result was the eukaryotic cell as we now know it. This inside-out theory is explained in more detail using a diagram in the research article (see notes to editors).
Erich Feldmeier

Dangerously Irrelevant - 0 views

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    "Today the Iowa Department of Education (DE) released a report on achievement levels in Iowa compared to other states. The report also focuses heavily on closing the significant achievement gaps that exist in our state. Here are some very quick reactions that I have to the report…"
Erich Feldmeier

Game Theory and the Treatment of Cancer | MIT Technology Review - 0 views

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    "Similarly, how should cancer biologists think about cancer cells capable of producing vascular endothelial growth factor, a protein that promotes the growth of blood vessels? Clearly, the importance of this protein only makes sense when thinking about a cancer cell's environment: how close it is to blood vessels that it can exploit, for example."
Erich Feldmeier

Lab Culture: Glowing Fish Brains, Cartoons, and Espresso in the Florian Engert Lab - Ph... - 0 views

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    "I visit a lot of molecular biology labs, and most of them look pretty much identical: lab benches, microscopes, computers, messy break rooms, big filing cabinets crammed into every free corner. When you look closely, though, every lab has its own flavor, its own culture. This is the first post of what I hope will be a fun, photo-heavy series on the culture of different labs. Florian Engert's lab at Harvard is large, colorful, and messy."
Janos Haits

BrainLogic - 0 views

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    The goal of this project is the development of cognitive non-computational structure close to those of human brain. In fact - this is an attempt to create an artificial brain.
Erich Feldmeier

Fred H. Gage and Alysson R. Muotri Jumping Genes in the Brain Ensure That Even Identica... - 0 views

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    "So-called jumping genes, segments of DNA that can copy and paste them­selves into new places in the genome, can alter the activity of full-length genes. Occasionally they will turn on neighboring genes in these locations. That activity occurs more in the brain than other areas, resulting in different traits and behaviors, even in closely related individuals. These mobile genetic elements may also turn out to play a role in people's disposition to psychiatric disorders"
Janos Haits

CHB - 0 views

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    Come work with us Interested in working with researchers from different disciplines within the Harvard, MIT and Broad community and an unique opportunity to participate in world-class research to make an impact on human health? Come work with us! We are looking for a computational biologists to handle data from a wide variety of experimental methods, focusing on next-gen sequencing technologies. Keep Reading...  SCDE is live The Stem Cell Discovery Engine (SCDE) is an integrated platform that allows users to consistently describe, share and compare cancer and tissue stem cell data. It is made up of an online database of curated experiments coupled to a customized instance of the Galaxy analysis engine with tools for gene list manipulation and molecular profile comparisons. The SCDE currently contains more than 50 stem cell-related experiments. Each has been manually curated and encoded using the ISA-Tab standard to ensure the quality of the data and its annotation. Keep Reading...  The Center for Health Bioinformatics at the Harvard School of Public Health provides consults to researchers for the management, integration and contextual analysis of biological high-throughput data. We are a member of the Center for Stem Cell Bioinformatics, the Environmental Statistics and Bioinformatics Core at the Harvard NIEHS Center for Environmental Health and the Genetics & Bioinformatics Consulting group for Harvard Catalyst and work closely with our colleagues in the Department of Biostatistics and the Program in Quantitative Genomics to act as a single point of contact for computational biology,
Erich Feldmeier

Social Media and Peer Learning: From Mediated Pedagogy to Peeragogy | School of Informa... - 0 views

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    "Howard Rheingold offers a glimpse of the future of high-end online learning in which motivated self-learners collaborate via a variety of social media to create, deliver, and learn an agreed curriculum: a mutant variety of pedagogy that more closely resembles a peer-agogy. Rheingold proposes that our intention should be to teach ourselves how to teach ourselves online, and to share what we learn"
Erich Feldmeier

Cadotte, Dinnage, Tilman: ESA Online Journals - Phylogenetic diversity promotes ecosyst... - 0 views

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    "Our results indicate that communities where species are evenly and distantly related to one another are more stable compared to communities where phylogenetic relationships are more clumped. This result could be explained by a phylogenetic sampling effect, where some lineages show greater stability in productivity compared to other lineages, and greater evolutionary distances reduce the chance of sampling only unstable groups. However, we failed to find evidence for similar stabilities among closely related species. Alternatively, we found evidence that plot biomass variance declined with increasing phylogenetic distances, and greater evolutionary distances may represent species that are ecologically different (phylogenetic complementarity). Accounting for evolutionary relationships can reveal how diversity in form and function may affect stability."
Janos Haits

Science Gate - 0 views

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    Our over-arching goal is to develop science curriculum materials that will close the widely disparate levels of achievement that occur in impoverished communities, both urban and rural.
Ivan Pavlov

New findings challenge assumptions about origins of life - 0 views

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    Our genetic code is translated by two super-families of modern-day enzymes. Carter's research team created and superimposed digital three-dimensional versions of the two super-families to see how their structures aligned. Carter found that all the enzymes have virtually identical cores that can be extracted to produce "molecular fossils" he calls Urzymes-Ur meaning earliest or original. The other parts, he said, are variations that were introduced later, as evolution unfolded. These two Urzymes are as close as scientists have gotten to the actual ancient enzymes that would have populated the Earth billions of years ago.
Sam M

The History of the US Space Shuttle Program - 0 views

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    The US Space Shuttle is down to its final few flights. The space shuttle has been flying for 29 years now and is coming to a close. The Shuttle Program has accomplished much in these 29 years.
Charles Daney

Backreaction: News from Other Worlds - 0 views

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    This week, I came across some quite amazing news about planets at other stars in our galaxy. But it's not just the stories of planetary collisions and retrograde orbits that have fascinated me: It's also how all this has been learned, by closely analyzing light curves and spectra.
Charles Daney

BBC - Spaceman: Still waiting to bag the big one - 0 views

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    It was supposed to be the first great scientific discovery of the 21st Century - or so many researchers thought when they rushed down to the bookmakers to place bets at what were deemed at the time to be ludicrously generous odds. The physicists believed that they were close to making the first direct detection of gravitational waves, the ripples in space-time generated by supernovas and coalescing neutron stars.
Skeptical Debunker

Darkness increases dishonest behavior - 0 views

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    "Darkness can conceal identity and encourage moral transgressions; thus Ralph Waldo Emerson wrote in "Worship" in The Conduct of Life (1860), "as gaslight is the best nocturnal police, so the universe protects itself by pitiless publicity." New research in Psychological Science, a journal of the Association for Psychological Science, shows that darkness may also induce a psychological feeling of illusory anonymity, just as children playing "hide and seek" will close their eyes and believe that other cannot see them, the experience of darkness, even one as subtle as wearing a pair of sunglasses, triggers the belief that we are warded from others' attention and inspections."
Skeptical Debunker

If bonobo Kanzi can point as humans do, what other similarities can rearing reveal? - 0 views

  • The difference between pointing by the Great Ape Trust bonobos - the only ones in the world with receptive competence for spoken English - and other captive apes that make hand gestures is explained by the culture in which they were reared, according to the paper's authors: Janni Pedersen, an Iowa State University Ph.D. candidate conducting research for her dissertation at Great Ape Trust; Pär Segerdahl, a scientist from Sweden who has published several philosophical inquires into language; and William M. Fields, an ethnographer investigating language, culture and tools in non-human primates. Fields also is Great Ape Trust's director of scientific research. Because Kanzi, Panbanisha and Nyota were raised in a culture where pointing has a purpose - The Trust's hallmark Pan/Homo environment, where infant bonobos are reared with both bonobo (Pan paniscus) and human (Homo sapiens) influences - their pointing is as scientifically meaningful as their understanding of spoken English, Fields said. The pointing study supports and builds on previous research on the effect of rearing culture on cognitive capabilities, including the 40-year research corpus of Dr. Duane Rumbaugh, Dr. Sue Savage-Rumbaugh and Fields, which is the foundation of the scientific inquiry at Great Ape Trust. Those studies included the breakthrough finding that Kanzi and other bonobos with receptive competence for spoken English acquired language as human children do - by being exposed to it since infancy. The bonobos adopted finger-pointing behavior for the same reasons, because they were reared in a culture where pointing has meaning.
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    You may have more in common with Kanzi, Panbanisha and Nyota, three language-competent bonobos living at Great Ape Trust, than you thought. And those similarities, right at your fingertip, might one day tell scientists more about the effect of culture on neurological disorders that limit human expression. Among humans, pointing is a universal language, an alternative to spoken words to convey a message. Before they speak, infants point, a gesture scientists agree is closely associated with word learning. But when an ape points, scientists break rank on the question of whether pointing is a uniquely human behavior. Some of the world's leading voices in modern primatology have argued that although apes may gesture in a way that resembles human pointing, the genetic and cognitive differences between apes and humans are so great that the apes' signals have no specific intent. Not so, say Great Ape Trust scientists, who argued in a recently published scientific paper, "Why Apes Point: Pointing Gestures in Spontaneous Conversation of Language-Competent Pan/Homo Bonobos," that not only do Kanzi, Panbanisha and Nyota point with their index fingers in conversation as a human being might, these bonobos do so with specific intent and objectives in mind.
Skeptical Debunker

Human cells exhibit foraging behavior like amoebae and bacteria - 0 views

  • "As far as we can tell, this is the first time this type of behavior has been reported in cells that are part of a larger organism," says Peter T. Cummings, John R. Hall Professor of Chemical Engineering, who directed the study that is described in the March 10 issue of the Public Library of Science journal PLoS ONE. The discovery was the unanticipated result of a study the Cummings group conducted to test the hypothesis that the freedom with which different cancer cells move - a concept called motility - could be correlated with their aggressiveness: That is, the faster a given type of cancer cell can move through the body the more aggressive it is. "Our results refute that hypothesis—the correlation between motility and aggressiveness that we found among three different types of cancer cells was very weak," Cummings says. "In the process, however, we began noticing that the cell movements were unexpectedly complicated." Then the researchers' interest was piqued by a paper that appeared in the February 2008 issue of the journal Nature titled, "Scaling laws of marine predator search behaviour." The paper contained an analysis of the movements of a variety of radio-tagged marine predators, including sharks, sea turtles and penguins. The authors found that the predators used a foraging strategy very close to a specialized random walk pattern, called a Lévy walk, an optimal method for searching complex landscapes. At the end of the paper's abstract they wrote, "...Lévy-like behaviour seems to be widespread among diverse organisms, from microbes to humans, as a 'rule' that evolved in response to patchy resource distributions." This gave Cummings and his colleagues a new perspective on the cell movements that they were observing in the microscope. They adopted the basic assumption that when mammalian cells migrate they face problems, such as efficiently finding randomly distributed targets like nutrients and growth factors, that are analogous to those faced by single-celled organisms foraging for food. With this perspective in mind, Alka Potdar, now a post-doctoral fellow at Case Western Reserve University and the Cleveland Clinic, cultured cells from three human mammary epithelial cell lines on two-dimensional plastic plates and tracked the cell motions for two-hour periods in a "random migration" environment free of any directional chemical signals. Epithelial cells are found throughout the body lining organs and covering external surfaces. They move relatively slowly, at about a micron per minute which corresponds to two thousandths of an inch per hour. When Potdar carefully analyzed these cell movements, she found that they all followed the same pattern. However, it was not the Lévy walk that they expected, but a closely related search pattern called a bimodal correlated random walk (BCRW). This is a two-phase movement: a run phase in which the cell travels primarily in one direction and a re-orientation phase in which it stays in place and reorganizes itself internally to move in a new direction. In subsequent studies, currently in press, the researchers have found that several other cell types (social amoeba, neutrophils, fibrosarcoma) also follow the same pattern in random migration conditions. They have also found that the cells continue to follow this same basic pattern when a directional chemical signal is added, but the length of their runs are varied and the range of directions they follow are narrowed giving them a net movement in the direction indicated by the signal.
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    When cells move about in the body, they follow a complex pattern similar to that which amoebae and bacteria use when searching for food, a team of Vanderbilt researchers have found. The discovery has a practical value for drug development: Incorporating this basic behavior into computer simulations of biological processes that involve cell migration, such as embryo development, bone remodeling, wound healing, infection and tumor growth, should improve the accuracy with which these models can predict the effectiveness of untested therapies for related disorders, the researchers say.
thinkahol *

How much information is there in the world? - 3 views

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    ScienceDaily (Feb. 11, 2011) - Think you're overloaded with information? Not even close.
thinkahol *

Dogs Decoded | Watch Free Documentary Online - 6 views

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    Dogs Decoded reveals the science behind the remarkable bond between humans and their dogs and investigates new discoveries in genetics that are illuminating the origin of dogs - with surprising implications for the evolution of human culture. Other research is proving what dog lovers have suspected all along: Dogs have an uncanny ability to read and respond to human emotions. Humans, in turn, respond to dogs with the same hormone responsible for bonding mothers to their babies. How did this incredible relationship between humans and dogs come to be? And how can dogs, so closely related to fearsome wild wolves, behave so differently?
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