Skip to main content

Home/ RIS IB Biology/ Group items tagged com

Rss Feed Group items tagged

Changul Louis Yeum

Study Says DNA's Power to Predict Illness Is Limited - 0 views

  •  
    The answer, according to a new study of twins, is, for the most part, "no." While sequencing the entire DNA of individuals is proving fantastically useful in understanding diseases and finding new treatments, it is not a method that will, for the most part, predict a person's medical future.
Kaoko Miyazaki

lincRNA: A recently discovered RNA organizes stem cell differentiation - 0 views

  •  
    Organizing how proteins assemble in embryonic cells and taking control over/deciding whether a stem cells stays pluripotent or not are only two of the main functions of the recently discovered lincRNAs. These new discoveries of lincRNAs and ongoing experiments only help researches such as Mitchell Guttman from the Broad Institute widen up the study of genetics and the human genome to a new field.
wasin kusakabe

Direct transfer of plant genes from chloroplasts into the cell nucleus: Gene function p... - 0 views

  • Chloroplasts, the plant cell's green solar power generators, were once living beings in their own right.
  • This changed about one billion years ago, when they were swallowed up but not digested by larger cells.
  • either direct transport in the form of DNA fragments from the chloroplasts to the nucleus or transport in the form of mRNA, which is then transcribed back into DNA.
  • ...5 more annotations...
  • Genes consist of several modules, separated by non-coding DNA regions (introns).
  • It was found that the transfer takes place without the involvement of RNA and that the DNA apparently jumps directly from the cell's chloroplasts into its nucleus.
  • t is thought that the introns even help the splicing enzymes by folding themselves into stable RNA structures, thus directing the enzymes to the right locations.
  • Since the introns obstruct protein synthesis, they need to be removed from the mRNA, a procedure described as splicing.
    • wasin kusakabe
       
      The Chloroplasts was an different entity before they were swallowed up by larger cells to corporate with each other.
  •  
    The differences between the genes in the chloroplasts and the genes in the nucleus being researched.
wasin kusakabe

Athletic frogs have faster-changing genomes - 0 views

    • wasin kusakabe
       
      Physical activities can change the DNA sequence which can be passed on to later generations. However this has only been tested on frogs and may not apply to mammals like us.
  • Physically fit frogs have faster-changing genomes
  • Stretches of DNA accumulate changes over time
  • ...3 more annotations...
  • athletic frogs tended to have faster-changing genomes.
  • During exercise, the circulatory system provides blood and oxygen to the tissues that are needed most
  • When physical activity has stopped, the rush of blood and oxygen when circulation is restored to those tissues produces a burst of free radicals that can cause wear and tear on DNA, eventually causing genetic changes that -- if they affect the DNA of cells that make eggs or sperm -- can be passed to future generations.
Nitchakan Chaiprukmalakan

Biotechdaily - Low MicroRNA Activity Characterizes Inflamed Lung Tissues - 0 views

  • A recent study examined the interaction between a specific microRNA (miRNA) and the activity of the inflammatory cytokine interleukin 13 (IL-13).
  • In the current study, investigators at the Cincinnati Children's Hospital Medical Center (Ohio, USA) examined the effect that stimulation of IL-13 activity has on microRNAs, particularly miR-375
  • They reported in the March 28, 2012, online edition of the journal Mucosal Immunology that IL-13 induced changes in epithelial gene and protein expression including the consistent downregulation of miR-375 in IL-13 stimulated human esophageal squamous and bronchial epithelial cells.
  • ...3 more annotations...
  • Analysis of miR-375 levels in a human disease characterized by IL-13 overproduction - the allergic disorder eosinophilic esophagitis (EE) - revealed downregulation of miR-375 in EE patient samples compared with control patients. Low levels of miR-375 expression levels indicated disease activity.
  • “MiR-375 is proof of principle that microRNAs are involved in fine-tuning IL-13-mediated responses, which opens up a set of new possibilities for novel therapeutic targets for treatment of allergic disease.”
  • “The identification of a microRNA that regulates IL-13-induced changes and inflammatory pathways is a significant advancement for the understanding and future treatment of allergic disease,
Nitchakan Chaiprukmalakan

New study: Tracking proteins that repair DNA - 0 views

  • DNA damage could be caused by many things including toxins, radiation, or a failure in molecular chemistry. If it happens in one cell, the damage may do nothing, or at worse cause the cell to die. If damage occurs in a reproductive cell (a zygote) it can be an inherited mutation; the consequences of which can go on for generations
  • The DNA repair workers are (so far as we know) protein molecules.
  • Under microscopic observations it was seen that the UvrA protein randomly jumps from one DNA molecule to the next, staying about 7 seconds before moving on. However, when UvrA formed a complex with two UvrB molecules (UvrAB), the search became more sophisticated and slower. The complex would slide along the DNA strand for as long as 40 seconds before moving to another molecule. Sometimes it was observed that the UvrAB motion would ‘pause,’ apparently checking for structural abnormalities that might indicate DNA damage.
  • ...1 more annotation...
  • It’s assumed the protein complex is analyzing, but the mechanism of analysis is unknown. It’s also unknown if the UvrAB complex (or similar complex) actually does the repair, or if it signals for some other protein complex(es) to make the repair.
Nitchakan Chaiprukmalakan

Proteins and quantum transition: Instant shape-shifting - 0 views

  • The genetic code in DNA provides the template to manufacture protein into all the cells of an organism.
  • Proteins are made by stringing together amino acids. For general purposes there are twenty amino acids in protein and they can be put together in endless combinations, some in short chains (yeast averages 466 amino acids), some long chains (titins have nearly 27,000 amino acids) and everything in-between. The pattern of amino acids determines much of the functionality of the protein.
  • Proteins are three-dimensional puzzle pieces. They are generally very complicated in shape. Even a small protein of only 100 amino acids can theoretically have 10^100 (ten to the hundredth power) different configurations.
  • ...7 more annotations...
  • most protein reconfigurations occur in nanoseconds
  • In research on proteins, it was assumed (given their chemical composition) proteins would uniformly fold as they cool down and unfold as they heat up. (Think of a balloon expanding and shrinking with the temperature of the air inside.) The experiments didn’t bear this out; the rate of folding or unfolding according to temperature change was unequal (asymmetric) and uneven (nonlinear).
  • In recent biochemistry a great deal of work is done with ‘tagging’ or ‘marking’ molecules with fluorescent and phosphorescent materials. It’s well known that fluorescence and phosphorescence are phenomena closely related to protein folding and they can only be understood in terms of quantum transition between molecules.
  • With a quantum transition, the protein could change configuration by ‘jumping’ – skipping all the transition steps – to the final configuration. They call this quantum folding and they developed a mathematical model that shows how the folding, which is virtually instantaneous, would react to change in temperature.
  • Their quantum transition model matched the folding curves for 15 different proteins and also provides an explanation for the different rates of folding and unfolding among these proteins.
  • Luo and Lu’s paper is short, a mere 16 pdf pages, and the model is unpretentious mathematically. (Luo has several other related papers on arXiv.) It comes from unknown researchers in an unknown corner of the academic world, and it’s published on the open-source arXiv system. The lack of pedigree means that it will take more time than usual for scientists around the world to learn of it, examine it, and possibly test it.
    • Nitchakan Chaiprukmalakan
       
      This is not accepted as a true fact yet and has to be proven.
Rafael Chen

Plant Geneticist Identifies Drought-Tolerant Gene - 2 views

  • isolation of the gene that controls drought tolerance in plants
  • enable a plant's leaves to stay green long after the last watering
  • plant hormone abscisic acid triggers the closure of the plant's stomata
  • ...3 more annotations...
  • controlled by the ERA1
  • By suppressing the gene -- and thereby keeping the stomata closed -- he found it is possible to control water loss so plants last longer
  • useful in applications such as the cut flower industry
  •  
    Genetically engineering plants with a drought resistant gene may be beneficial in creating plants whom leaves would stay green long after the last watering.
Mickey Tsai

Niceness a combination of genetics and environment, the Neurogenics of Niceness study f... - 0 views

  • BEING a nice person could come down to having a good set of genes
  • "kind" behaviour of more than 700 individuals was partly linked to receptor genes for oxytocin and vasopressin.
  • uch of the hormone you have, it's how responsive your brain is to the hormo
  • ...2 more annotations...
  • It's not about how much of the hormone you have, it's how responsive your brain is to the hormones
  • "(Niceness) is a combination of genetics and your environment."
  •  
    A study shows that genetics could play a role in determining "niceness". The kind behavior is found to be linked to receptor genes for oxytopic and vasopressin. People that are more responsive to it are more inclined to donate money, pay taxes, give blood, report crime etc. It isn't about how much of the hormone you have but how responsive you are to it. Of course genetics isnt the only factor, if you are surrounded by nice people it is likely that it would rub off on you.
Kantham Hongdusit

Improved Understanding Of Cancer Progression - 0 views

  •  
    Researchers in IMIM have discovered the function of the enzyme LOXL2, which is one of the factor causing cancer. The enzyme interacts with histone H3, and changes the DNA sequence around that histone, eliminating the lysine 4 amino acid group, which favors tumor development
Kantham Hongdusit

Niceness, Generosity May Have A Genetic Component - 0 views

  •  
    Psychologists from the Buffalo University and University of California have conducted a survey to find out if DNA can affect how a person perceives the world. They conclude that there is a specific gene, which has not yet been identified, that controls the receptors of oxytocin and vasopressin, hormones that display "niceness".
Pop karnchanapimonkul

Dieting During Pregnancy Increases Risk Of Obesity And Diabetes For Offspring - 0 views

  • babies of mothers who diet around the time of conception and in early pregnancy, may have an increased risk of obesity and type 2 diabetes throughout their lives. This study provides exciting insights into how behavior can lead to epigenetic changes in offspring related to obesity and disease.
  • dieting around the time a baby is conceived may increase the chance of the child becoming obese later in life
  • changes in the genes that control food intake and glucose levels that may lead to obesity and diabetes.
  • ...1 more annotation...
  • epigenetic changes with alterations in the structure of the DNA and its associated proteins, histones, which affects the way that genes can behave in later life.
  •  
    Article about how dieting during pregnancy cause offsprings to have a change in genes.
nidthamsirisup

Engineered stem cells seek out and kill HIV in living mice - 0 views

  • human stem cells can be genetically engineered into HIV-fighting cells
  • surrogate model
  • CD8 cytotoxic T lymphocytes -- the "killer" T cells that help fight infection -- from an HIV-infected individual and identified the molecule known as the T cell receptor, which guides the T cell in recognizing and killing HIV-infected cells.
  • ...12 more annotations...
  • cloned the receptor and used this to genetically engineer human blood stem cells.
  • mature T cells that can attack HIV in tissues where the virus resides and replicates.
  • CD4 cells are white blood cells that are an important component of the immune system, helping to fight off infections.
  • CD4 "helper" T cells
  • engineering stem cells to form immune cells that target HIV is effective in suppressing the virus in living tissues in an animal model
  • increased
  • HIV in the blood decreased.
    • wasin kusakabe
       
      Using mice as lab rats, researchers are able to produce a large amount of T cells that can fight off HIV more effectively.
  • The engineered stem cells developed into a large population of mature, multi-functional HIV-specific CD8 cells that could specifically target cells containing HIV proteins. The researchers also discovered that HIV-specific T cell receptors have to be matched to an individual in much the same way an organ is matched to a transplant patient.
  • Expanding on previous research providing proof-of-principle that human stem cells can be genetically engineered into HIV-fighting cells
  • In this current study, the researchers similarly engineered human blood stem cells and found that they can form mature T cells that can attack HIV in tissues where the virus resides and replicates. They did so by using a surrogate model, the humanized mouse, in which HIV infection closely resembles the disease and its progression in humans.
  • increased, while levels of HIV in the blood decreased. CD4 cells are white blood cells that are an important component of the immune system, helping to fight off infections. These results indicated that the engineered cells were capable of developing and migrating to the organs to fight infection there.
  •  
    Stem cells that are engineered to produce T cells that can help fight off HIV.
wasin kusakabe

Deep sequencing reveals potentially toxic, trade-restricted ingredients in some traditi... - 1 views

  • DNA sequencing technology to reveal the animal and plant composition
  • of traditional Chinese medicines
  • These plants contain chemicals that can be toxic if the wrong dosage is taken, but none of them actually listed concentrations on the packaging.”
  • ...5 more annotations...
  • estricted animals that are classified as vulnerable, endangered, or critically endangered, including the Asiatic black bear and Saiga antelope.”
  • including animal DNA and potential allergens such as soy or nuts.
  • mislabelling of TCMs
  • multiple samples that contained DNA from animals listed as trade-restricted
    • wasin kusakabe
       
      Traditional Chinese Medicines have incorrect labeling, which may lead to allergic reaction or crossing religious restrictions.
  •  
    Traditional Chinese Medicines' ingredients revealed by DNA sequencing to be potentially toxic.
Nickyz P.

GEN | Magazine Articles: Firm Focuses Operations on Gene Silencing - 0 views

  • It is developing therapeutics to prove the validity of ddRNAi in treating cancer, infectious diseases, and disorders of the central nervous system.
  • The ddRNAi platform focuses on the long-term downregulation of genes, making it suitable for targeting chronic life-threatening diseases. “We are silencing genes instead of introducing new genes, which separates us from traditional gene therapy companies,” Dr. French asserts.
  • “This targeted treatment markedly enhanced the benefits of radiation therapy in both cellular and tumor models,” the researchers concluded. Other radiotherapy-resistant tumors may benefit from the shRNAs created for the prostate cancer study.
Nickyz P.

It's Alive! Artificial Life Springs From Manmade DNA : Discovery News - 0 views

  • "This is the first synthetic cell that's been made," said Venter. "We call it synthetic because the cell is totally derived from a synthetic chromosome, made with four bottles of chemicals on a chemical synthesizer, starting with information in a computer."
  • Venter and his colleagues created a special code, similar to Morse code, to "write" within the DNA itself. Instead of dots and dashes, they used the sequence of four DNA nucleotides, thymine (T), guanine (G), cytosine (C), and adenine (A), as a code for any letter, number or punctuation mark. Using the code, the team included the names of the study co-authors, a website, and even several philosophical quotes, complete with punctuation.
Nitchakan Chaiprukmalakan

How a single gene mutation leads to uncontrolled obesity - 0 views

  • Researchers at Georgetown University Medical Center have revealed how a mutation in a single gene is responsible for the inability of neurons to effectively pass along appetite suppressing signals from the body to the right place in the brain.
  • The research team specifically found that a mutation in the brain-derived neurotrophic factor (Bdnf) gene in mice does not allow brain neurons to effectively pass leptin and insulin chemical signals through the brain. In humans, these hormones, which are released in the body after a person eats, are designed to "tell" the body to stop eating. But if the signals fail to reach correct locations in the hypothalamus, the area in the brain that signals satiety, eating continues.
  • He has found that the gene produces a growth factor that controls communication between neurons.
  • ...5 more annotations...
  • The Bdnf gene generates one short transcript and one long transcript. He discovered that when the long-form Bdnf transcript is absent, the growth factor BDNF is only synthesized in the cell body of a neuron but not in its dendrites. The neuron then produces too many immature synapses, resulting in deficits in learning and memory in mice. Xu also found that the mice with the same Bdnf mutation grew to be severely obese
  • large-scale genome-wide association studies showed Bdnf gene variants are, in fact, linked to obesity.
  • both leptin and insulin stimulate synthesis of BDNF in neuronal dendrites in order to move their chemical message from one neuron to another through synapses. The intent is to keep the leptin and insulin chemical signals moving along the neuronal highway to the correct brain locations, where the hormones will turn on a program that suppresses appetite.
  • "If there is a problem with the Bdnf gene, neurons can't talk to each other, and the leptin and insulin signals are ineffective, and appetite is not modified
  • One possible strategy would be to produce additional long-form Bdnf transcript using adeno-associated virus-based gene therapy, Xu says. But although this kind of gene therapy has proven to be safe, it is difficult to deliver across the brain blood barrier,
Rafael Chen

Scientists develop tools to make more complex biological machines from yeast - 0 views

  • creating a new type of biological "wire," using proteins that interact with DNA and behave like wires in electronic circuitry
  • it can be re-engineered over and over again
  • fundamental DNA components, called "promoters," which are needed for re-programming yeast
  • ...2 more annotations...
  • Future applications of this work could include tiny yeast-based machines that can be dropped into water supplies to detect contaminants, and yeast that records environmental conditions during the manufacture of biofuels to determine if improvements can be made to the production process.
  • help to improve things such as pollution monitoring and cleaner fuels
  •  
    Scientist uses yeast as the foundations in making more complex biological machines through genetic engineering.
Rafael Chen

Increased honey bee diversity means fewer pathogens, more helpful bacteria - 0 views

  • microbes in bee colonies that have previously been associated with fermentation in humans and other animals
  • communities of active bacteria harbored by honey bee colonies
  • research suggests honey bees may take advantage of these beneficial symbiotic bacteria to convert indigestible material into nutritious food and to enhance protection from pathogens
  • ...4 more annotations...
  • Genetic diversity is created in a colony when a queen mates with many male bees
  • less likelihood of potentially pathogenic bacteria showing up in genetically diverse honey bee colonies
  • individual bees and their symbionts can enhance the overall health of a colony when it is genetically diverse
  • increased resistance to colonization by pathogens or through the production of nutrients by these microbes
  •  
    Genetic Diversity in bee colonies increases resistance to colonization by pathogens through symbiotic relations with microbes.
Rafael Chen

New Plant Mutation Produces Tap Root With Large Amounts Of Oil, Proteins, And Starch - 1 views

  • The discovery could lead to genetically engineered plants that store commercially useful substances in an enlarged root
  • The pickle mutation mimics what happens in seeds, which typically are the major structures accumulating and storing proteins and oil
  • In this mutation the cells destined to become primary root cells retain the character of embryonic cells
  • ...2 more annotations...
  • They fail to make the switch from embryonic to adult
  • The mutation has its greatest effect when gibberellin is not present during the first 24 hours of growth
  •  
    A mutation in plants that makes the tap root accumulate large amounts of oils, proteins, and starch was discovered by scientist, this could lead to genetically engineered plants that store commercially useful substances in an enlarged root.
‹ Previous 21 - 40 of 74 Next › Last »
Showing 20 items per page