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Weiye Loh

Hermits and Cranks: Lessons from Martin Gardner on Recognizing Pseudoscientists: Scient... - 0 views

  • In 1950 Martin Gardner published an article in the Antioch Review entitled "The Hermit Scientist," about what we would today call pseudoscientists.
  • there has been some progress since Gardner offered his first criticisms of pseudoscience. Now largely antiquated are his chapters on believers in a flat Earth, a hollow Earth, Atlantis and Lemuria, Alfred William Lawson, Roger Babson, Trofim Lysenko, Wilhelm Reich and Alfred Korzybski. But disturbingly, a good two thirds of the book's contents are relevant today, including Gardner's discussions of homeopathy, naturopathy, osteopathy, iridiagnosis (reading the iris of the eye to deter- mine bodily malfunctions), food faddists, cancer cures and other forms of medical quackery, Edgar Cayce, the Great Pyramid's alleged mystical powers, handwriting analysis, ESP and PK (psychokinesis), reincarnation, dowsing rods, eccentric sexual theories, and theories of group racial differences.
  • The "hermit scientist," a youthful Gardner wrote, works alone and is ignored by mainstream scientists. "Such neglect, of course, only strengthens the convictions of the self-declared genius."
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  • Even then Gardner was bemoaning that some beliefs never seem to go out of vogue, as he recalled an H. L. Mencken quip from the 1920s: "Heave an egg out of a Pullman window, and you will hit a Fundamentalist almost anywhere in the U.S. today." Gardner cautions that when religious superstition should be on the wane, it is easy "to forget that thousands of high school teachers of biology, in many of our southern states, are still afraid to teach the theory of evolution for fear of losing their jobs." Today creationism has spread northward and mutated into the oxymoronic form of "creation science."
  • the differences between science and pseudoscience. On the one extreme we have ideas that are most certainly false, "such as the dianetic view that a one-day-old embryo can make sound recordings of its mother's conversation." In the borderlands between the two "are theories advanced as working hypotheses, but highly debatable because of the lack of sufficient data." Of these Gardner selects a most propitious propitious example: "the theory that the universe is expanding." That theory would now fall at the other extreme end of the spectrum, where lie "theories al- most certainly true, such as the belief that the Earth is round or that men and beasts are distant cousins."
  • How can we tell if someone is a scientific crank? Gardner offers this advice: (1) "First and most important of these traits is that cranks work in almost total isolation from their colleagues." Cranks typically do not understand how the scientific process operates—that they need to try out their ideas on colleagues, attend conferences and publish their hypotheses in peer-reviewed journals before announcing to the world their startling discovery. Of course, when you explain this to them they say that their ideas are too radical for the conservative scientific establishment to accept.
  • (2) "A second characteristic of the pseudo-scientist, which greatly strengthens his isolation, is a tendency toward paranoia," which manifests itself in several ways: (1) He considers himself a genius. (2) He regards his colleagues, without exception, as ignorant blockheads....(3) He believes himself unjustly persecuted and discriminated against. The recognized societies refuse to let him lecture. The journals reject his papers and either ignore his books or assign them to "enemies" for review. It is all part of a dastardly plot. It never occurs to the crank that this opposition may be due to error in his work....(4) He has strong compulsions to focus his attacks on the greatest scientists and the best-established theories. When Newton was the outstanding name in physics, eccentric works in that science were violently anti-Newton. Today, with Einstein the father-symbol of authority, a crank theory of physics is likely to attack Einstein....(5) He often has a tendency to write in a complex jargon, in many cases making use of terms and phrases he himself has coined.
  • "If the present trend continues," Gardner concludes, "we can expect a wide variety of these men, with theories yet unimaginable, to put in their appearance in the years immediately ahead. They will write impressive books, give inspiring lectures, organize exciting cults. They may achieve a following of one—or one million. In any case, it will be well for ourselves and for society if we are on our guard against them."
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    May 23, 2010 | 31 comments Hermits and Cranks: Lessons from Martin Gardner on Recognizing Pseudoscientists Fifty years ago Gardner launched the modern skeptical movement. Unfortunately, much of what he wrote about is still current today By Michael Shermer   
Paul Melissa

Warning over 'surveillance state' - 9 views

http://news.bbc.co.uk/2/hi/uk_news/politics/7872425.stm The article effectively speaks of how CCTV cameras and DNA database are threats to privacy. Though many states have reasoned them for being...

Privacy Surveillance

started by Paul Melissa on 08 Sep 09 no follow-up yet
Wing Yan Wong

Users Poke Facebook With Lawsuit Over Privacy Policies - 3 views

http://www.technewsworld.com/story/67888.html This article discusses the violation of privacy laws as well as misinformation with regards to users' personal information. It was reported that Face...

privacy personal information

started by Wing Yan Wong on 28 Aug 09 no follow-up yet
Weiye Loh

Libertarianism Is Marxism of the Right - 4 views

http://www.commongroundcommonsense.org/forums/lofiversion/index.php/t21933.html "Because 95 percent of the libertarianism one encounters at cocktail parties, on editorial pages, and on Capitol Hil...

Libertarianism Marxism

started by Weiye Loh on 28 Aug 09 no follow-up yet
Inosha Wickrama

ethical porn? - 50 views

I've seen that video recently. Anyway, some points i need to make. 1. different countries have different ages of consent. Does that mean children mature faster in some countries and not in other...

pornography

Reseena Abdullah

Telecoms in emerging markets - 0 views

http://www.economist.com/printedition/displaystory.cfm?story_id=14483896 The article above details the issue surrounding the telecommunications markets in the developing countries. It mentions how...

started by Reseena Abdullah on 07 Oct 09 no follow-up yet
Weiye Loh

Op-Ed Columnist - The Moral Naturalists - NYTimes.com - 0 views

  • Moral naturalists, on the other hand, believe that we have moral sentiments that have emerged from a long history of relationships. To learn about morality, you don’t rely upon revelation or metaphysics; you observe people as they live.
  • By the time humans came around, evolution had forged a pretty firm foundation for a moral sense. Jonathan Haidt of the University of Virginia argues that this moral sense is like our sense of taste. We have natural receptors that help us pick up sweetness and saltiness. In the same way, we have natural receptors that help us recognize fairness and cruelty. Just as a few universal tastes can grow into many different cuisines, a few moral senses can grow into many different moral cultures.
  • Paul Bloom of Yale noted that this moral sense can be observed early in life. Bloom and his colleagues conducted an experiment in which they showed babies a scene featuring one figure struggling to climb a hill, another figure trying to help it, and a third trying to hinder it. At as early as six months, the babies showed a preference for the helper over the hinderer. In some plays, there is a second act. The hindering figure is either punished or rewarded. In this case, 8-month-olds preferred a character who was punishing the hinderer over ones being nice to it.
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  • This illustrates, Bloom says, that people have a rudimentary sense of justice from a very early age. This doesn’t make people naturally good. If you give a 3-year-old two pieces of candy and ask him if he wants to share one of them, he will almost certainly say no. It’s not until age 7 or 8 that even half the children are willing to share. But it does mean that social norms fall upon prepared ground. We come equipped to learn fairness and other virtues.
  • If you ask for donations with the photo and name of one sick child, you are likely to get twice as much money than if you had asked for donations with a photo and the names of eight children. Our minds respond more powerfully to the plight of an individual than the plight of a group.
  • If you are in a bad mood you will make harsher moral judgments than if you’re in a good mood or have just seen a comedy. As Elizabeth Phelps of New York University points out, feelings of disgust will evoke a desire to expel things, even those things unrelated to your original mood. General fear makes people risk-averse. Anger makes them risk-seeking.
  • People who behave morally don’t generally do it because they have greater knowledge; they do it because they have a greater sensitivity to other people’s points of view.
  • The moral naturalists differ over what role reason plays in moral judgments. Some, like Haidt, believe that we make moral judgments intuitively and then construct justifications after the fact. Others, like Joshua Greene of Harvard, liken moral thinking to a camera. Most of the time we rely on the automatic point-and-shoot process, but occasionally we use deliberation to override the quick and easy method.
  • For people wary of abstract theorizing, it’s nice to see people investigating morality in ways that are concrete and empirical. But their approach does have certain implicit tendencies. They emphasize group cohesion over individual dissent. They emphasize the cooperative virtues, like empathy, over the competitive virtues, like the thirst for recognition and superiority. At this conference, they barely mentioned the yearning for transcendence and the sacred, which plays such a major role in every human society. Their implied description of the moral life is gentle, fair and grounded. But it is all lower case. So far, at least, it might not satisfy those who want their morality to be awesome, formidable, transcendent or great.
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    The Moral Naturalists By DAVID BROOKS Published: July 22, 2010
Weiye Loh

Skepticblog » ClimateGate Follow Up - 0 views

  • Recently the third of three independent reviews of the Climatic Research Unit (CRU) e-mail scandal has been completed. All three reviews concluded that the CRU was not hiding, destroying, or manipulating data.
  • At the time there were those who believed the e-mails to be the innocent chatter of scientists and others who thought it was the smoking gun of scientific fraud. At the time I wrote: I don’t know what the lessons of climategate are yet – we need to see what actually happened first. But how people deal with climategate says a lot about their process. Those who are making bold claims based upon ambiguous, circumstantial, and out-of-context evidence, are not doing themselves or their side any favors.
  • after a thorough review there is no evidence of any actual scientific fraud, but the scientists were not adequately complying with FOI requests. It seems the climate scientists at the CRU had developed a bit of a bunker mentality and felt justified in frustrating what they felt were frivolous and harassing FOI requests.
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  • This, in turn, seems to be a symptom of an obscure scientific discipline (climate science) being thrust in recent years into the middle of a raging world-wide political controversy. There was not a culture among these scientists of dealing with the politically controversial aspects of their science.
  • This episode reminds us that scientists are human, and therefore science itself is a human endeavor and subject to all the foibles that plague any human activity.
  • there were charges that the CRU did not have backups of data they relied upon for their conclusions. But the CRU was never the primary source of this data – they simply aggregated and analyzed it. The primary data has always been available from the sources. As the BBC reports: “We find that CRU was not in a position to withhold access to such data or tamper with it,” it says. “We demonstrated that any independent researcher can download station data directly from primary sources and undertake their own temperature trend analysis”.
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    CLIMATEGATE FOLLOW UP by STEVEN NOVELLA, Jul 12 2010
Weiye Loh

Rational Irrationality: Do Good Kindergarten Teachers Raise their Pupils' Wages? : The ... - 0 views

  • Columnist David Leonhardt reports the findings of a new study which suggests that children who are fortunate enough to have an unusually good kindergarten teacher can expect to make roughly an extra twenty dollars a week by the age of twenty-seven.
  • it implies that during each school year a good kindergarten teacher creates an additional $320,000 of earnings.
  • The new research (pdf), the work of six economists—four from Harvard, one from Berkeley, and one from Northwestern—upends this finding. It is based on test scores and demographic data from a famous experiment carried out in Tennessee during the late nineteen-eighties, which tracked the progress of about 11,500 students from kindergarten to third grade. Most of these students are now about thirty years old, which means they have been working for up to twelve years. The researchers also gained access to income-tax data and matched it up with the test scores. Their surprising conclusion is that the uplifting effect of a good kindergarten experience, after largely disappearing during a child’s teen years, somehow reappears in the adult workplace. (See Figure 7 in the paper.) Why does this happen? The author don’t say, but Leonhardt offers this explanation: “Good early education can impart skills that last a lifetime—patience, discipline, manners, perseverance. The tests that 5-year-olds take may pick up these skills, even if later multiple-choice tests do not.”
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  • However, as I read the story and the findings it is based upon, some questions crept into my mind. I relate them not out of any desire to discredit the study, which is enterprising and newsworthy, but simply as a warning to parents and policymakers not to go overboard.
  • from a dense academic article that hasn’t been published or peer reviewed. At this stage, there isn’t even a working paper detailing how the results were arrived at: just a set of slides. Why is this important? Because economics is a disputatious subject, and surprising empirical findings invariably get challenged by rival groups of researchers. The authors of the paper include two rising stars of the economics profession—Berkeley’s Emmanuel Saez and Harvard’s Raj Chetty—both of whom have reputations for careful and rigorous work. However, many other smart researchers have had their findings overturned. That is how science proceeds. Somebody says something surprising, and others in the field try to knock it down. Sometimes they succeed; sometimes they don’t. Until that Darwinian process is completed, which won’t be for another couple of years, at least, the new findings should be regarded as provisional.
  • A second point, which is related to the first, concerns methodology. In coming up with the $320,000 a year figure for the effects that kindergarten teachers have on adult earnings, the authors make use of complicated statistical techniques, including something called a “jack knife regression.” Such methods are perfectly legitimate and are now used widely in economics, but their application often adds an additional layer of ambiguity to the findings they generate. Is this particular statistical method appropriate for the task at hand? Do other methods generate different results? These are the sorts of question that other researchers will be pursuing.
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    JULY 29, 2010 DO GOOD KINDERGARTEN TEACHERS RAISE THEIR PUPILS' WAGES? Posted by John Cassidy
Weiye Loh

Op-Ed Columnist - Our Beaker Is Starting to Boil - NYTimes.com - 0 views

  • David Breashears is one of America’s legendary mountain climbers, a man who has climbed Mount Everest five times and led the Everest IMAX film team in 1996.
  • These days, Mr. Breashears is still climbing the Himalayas, but he is lugging more than pitons and ice axes. He’s also carrying special cameras to document stunning declines in glaciers on the roof of the world.
  • he dug out archive photos from early Himalayan expeditions, and then journeyed across ridges and crevasses to photograph from the exact same spots. The pairs of matched photographs, old and new, are staggering. Time and again, the same glaciers have shrunk drastically in every direction, often losing hundreds of feet in height.
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  • Lens: Photos Reveal Receding Himalaya Glaciers (July 16, 2010)
  • most Himalayan glaciers are in retreat for three reasons. First is the overall warming tied to carbon emissions. Second, rain and snow patterns are changing, so that less new snow is added to replace what melts. Third, pollution from trucks and smoke covers glaciers with carbon soot so that their surfaces become darker and less reflective — causing them to melt more quickly.
Weiye Loh

The American Spectator : Can't Live With Them… - 1 views

  • ommentators have repeatedly told us in recent years that the gap between rich and poor has been widening. It is true, if you compare the income of those in the top fifth of earners with the income of those in the bottom fifth, that the spread between them increased between 1996 and 2005. But, as Sowell points out, this frequently cited figure is not counting the same people. If you look at individual taxpayers, Sowell notes, those who happened to be in the bottom fifth in 1996 saw their incomes nearly double over the decade, while those who happened to be in the top fifth in 1995 saw gains of only 10 percent on average and those in the top 5 percent actually experienced decline in their incomes. Similar distortions are perpetrated by those bewailing "stagnation" in average household incomes -- without taking into account that households have been getting smaller, as rising wealth allows people to move out of large family homes.
  • Sometimes the distortion seems to be deliberate. Sowell gives the example of an ABC news report in the 1980s focusing on five states where "unemployment is most severe" -- without mentioning that unemployment was actually declining in all the other 45 states. Sometimes there seems to be willful incomprehension. Journalists have earnestly reported that "prisons are ineffective" because two-thirds of prisoners are rearrested within three years of their release. As Sowell comments: "By this kind of reasoning, food is ineffective as a response to hunger because it is only a matter of time after eating before you get hungry again. Like many other things, incarceration only works when it is done."
  • why do intellectuals often seem so lacking in common sense? Sowell thinks it goes with the job-literally: He defines "intellectuals" as "an occupational category [Sowell's emphasis], people whose occupations deal primarily with ideas -- writers, academics and the like." Medical researchers or engineers or even "financial wizards" may apply specialized knowledge in ways that require great intellectual skill, but that does not make them "intellectuals," in Sowell's view: "An intellectual's work begins and ends with ideas [Sowell's emphasis]." So an engineer "is ruined" if his bridges or buildings collapse and so with a financier who "goes broke… the proof of the pudding is ultimately in the eating…. but the ultimate test of a [literary] deconstructionist's ideas is whether other deconstructionists find those ideas interesting, original, persuasive, elegant or ingenious. There is no external test." The ideas dispensed by intellectuals aren't subject to "external" checks or exposed to the test of "verifiability" (apart from what "like-minded individuals" find "plausible") and so intellectuals are not really "accountable" in the same way as people in other occupations.
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  • it is not quite true, even among tenured professors in the humanities, that idea-mongers can entirely ignore "external" checks. Even academics want to be respectable, which means they can't entirely ignore the realities that others notice. There were lots of academics talking about the achievements of socialism in the 1970s (I can remember them) but very few talking that way after China and Russia repudiated these fantasies.
  • THE MOST DISTORTING ASPECT of Sowell's account is that, in focusing so much on the delusions of intellectuals, he leaves us more confused about what motivates the rest of society. In a characteristic passage, Sowell protests that "intellectuals...have sought to replace the groups into which people have sorted themselves with groupings created and imposed by the intelligentsia. Ties of family, religion, and patriotism, for example, have long been rated as suspect or detrimental by the intelligentsia, and new ties that intellectuals have created, such as class -- and more recently 'gender' -- have been projected as either more real or more important."
  • There's no disputing the claim that most "intellectuals" -- surely most professors in the humanities-are down on "patriotism" and "religion" and probably even "family." But how did people get to be patriotic and religious in the first place? In Sowell's account, they just "sorted themselves" -- as if by the invisible hand of the market.
  • Let's put aside all the violence and intimidation that went into building so many nations and so many faiths in the past. What is it, even today, that makes people revere this country (or some other); what makes people adhere to a particular faith or church? Don't inspiring words often move people? And those who arrange these words -- aren't they doing something similar to what Sowell says intellectuals do? Is it really true, when it comes to embracing national or religious loyalties, that "the proof of the pudding is in the eating"?
  • Even when it comes to commercial products, people don't always want to be guided by mundane considerations of reliable performance. People like glamour, prestige, associations between the product and things they otherwise admire. That's why companies spend so much on advertising. And that's part of the reason people are willing to pay more for brand names -- to enjoy the associations generated by advertising. Even advertising plays on assumptions about what is admirable and enticing-assumptions that may change from decade to decade, as background opinions change. How many products now flaunt themselves as "green" -- and how many did so 20 years ago?
  • If we closed down universities and stopped subsidizing intellectual publications, would people really judge every proposed policy by external results? Intellectuals tend to see what they expect to see, as Sowell's examples show -- but that's true of almost everyone. We have background notions about how the world works that help us make sense of what we experience. We might have distorted and confused notions, but we don't just perceive isolated facts. People can improve in their understanding, developing background understandings that are more defined or more reliable. That's part of what makes people interested in the ideas of intellectuals -- the hope of improving their own understanding.
  • On Sowell's account, we wouldn't need the contributions of a Friedrich Hayek -- or a Thomas Sowell -- if we didn't have so many intellectuals peddling so many wrong-headed ideas. But the wealthier the society, the more it liberates individuals to make different choices and the more it can afford to indulge even wasteful or foolish choices. I'd say that means not that we have less need of intellectuals, but more need of better ones. 
Weiye Loh

Essay - The End of Tenure? - NYTimes.com - 0 views

  • The cost of a college education has risen, in real dollars, by 250 to 300 percent over the past three decades, far above the rate of inflation. Elite private colleges can cost more than $200,000 over four years. Total student-loan debt, at nearly $830 billion, recently surpassed total national credit card debt. Meanwhile, university presidents, who can make upward of $1 million annually, gravely intone that the $50,000 price tag doesn’t even cover the full cost of a year’s education.
  • Then your daughter reports that her history prof is a part-time adjunct, who might be making $1,500 for a semester’s work. There’s something wrong with this picture.
  • The higher-ed jeremiads of the last generation came mainly from the right. But this time, it’s the tenured radicals — or at least the tenured liberals — who are leading the charge. Hacker is a longtime contributor to The New York Review of Books and the author of the acclaimed study “Two Nations: Black and White, Separate, Hostile, Unequal,”
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  • And these two books arrive at a time, unlike the early 1990s, when universities are, like many students, backed into a fiscal corner. Taylor writes of walking into a meeting one day and learning that Columbia’s endowment had dropped by “at least” 30 percent. Simply brushing off calls for reform, however strident and scattershot, may no longer be an option.
  • The labor system, for one thing, is clearly unjust. Tenured and tenure-track professors earn most of the money and benefits, but they’re a minority at the top of a pyramid. Nearly two-thirds of all college teachers are non-tenure-track adjuncts like Matt Williams, who told Hacker and Dreifus he had taught a dozen courses at two colleges in the Akron area the previous year, earning the equivalent of about $8.50 an hour by his reckoning. It is foolish that graduate programs are pumping new Ph.D.’s into a world without decent jobs for them. If some programs were phased out, teaching loads might be raised for some on the tenure track, to the benefit of undergraduate education.
  • it might well be time to think about vetoing Olympic-quality athletic ­facilities and trimming the ranks of administrators. At Williams, a small liberal arts college renowned for teaching, 70 percent of employees do something other than teach.
  • But Hacker and Dreifus go much further, all but calling for an end to the role of universities in the production of knowledge. Spin off the med schools and research institutes, they say. University presidents “should be musing about education, not angling for another center on antiterrorist technologies.” As for the humanities, let professors do research after-hours, on top of much heavier teaching schedules. “In other occupations, when people feel there is something they want to write, they do it on their own time and at their own expense,” the authors declare. But it seems doubtful that, say, “Battle Cry of Freedom,” the acclaimed Civil War history by Princeton’s James McPherson, could have been written on the weekends, or without the advance spadework of countless obscure monographs. If it is false that research invariably leads to better teaching, it is equally false to say that it never does.
  • Hacker’s home institution, the public Queens College, which has a spartan budget, commuter students and a three-or-four-course teaching load per semester. Taylor, by contrast, has spent his career on the elite end of higher education, but he is no less disillusioned. He shares Hacker and Dreifus’s concerns about overspecialized research and the unintended effects of tenure, which he believes blocks the way to fresh ideas. Taylor has backed away from some of the most incendiary proposals he made last year in a New York Times Op-Ed article, cheekily headlined “End the University as We Know It” — an article, he reports, that drew near-universal condemnation from academics and near-universal praise from everyone else. Back then, he called for the flat-out abolition of traditional departments, to be replaced by temporary, “problem-centered” programs focusing on issues like Mind, Space, Time, Life and Water. Now, he more realistically suggests the creation of cross-­disciplinary “Emerging Zones.” He thinks professors need to get over their fear of corporate partnerships and embrace efficiency-enhancing technologies.
  • It is not news that America is a land of haves and have-nots. It is news that colleges are themselves dividing into haves and have-nots; they are becoming engines of inequality. And that — not whether some professors can afford to wear Marc Jacobs — is the real scandal.
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    The End of Tenure? By CHRISTOPHER SHEA Published: September 3, 2010
Weiye Loh

Research integrity: Sabotage! : Nature News - 0 views

  • University of Michigan in Ann Arbor
  • Vipul Bhrigu, a former postdoc at the university's Comprehensive Cancer Center, wears a dark-blue three-buttoned suit and a pinched expression as he cups his pregnant wife's hand in both of his. When Pollard Hines calls Bhrigu's case to order, she has stern words for him: "I was inclined to send you to jail when I came out here this morning."
  • Bhrigu, over the course of several months at Michigan, had meticulously and systematically sabotaged the work of Heather Ames, a graduate student in his lab, by tampering with her experiments and poisoning her cell-culture media. Captured on hidden camera, Bhrigu confessed to university police in April and pleaded guilty to malicious destruction of personal property, a misdemeanour that apparently usually involves cars: in the spaces for make and model on the police report, the arresting officer wrote "lab research" and "cells". Bhrigu has said on multiple occasions that he was compelled by "internal pressure" and had hoped to slow down Ames's work. Speaking earlier this month, he was contrite. "It was a complete lack of moral judgement on my part," he said.
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  • Bhrigu's actions are surprising, but probably not unique. There are few firm numbers showing the prevalence of research sabotage, but conversations with graduate students, postdocs and research-misconduct experts suggest that such misdeeds occur elsewhere, and that most go unreported or unpoliced. In this case, the episode set back research, wasted potentially tens of thousands of dollars and terrorized a young student. More broadly, acts such as Bhrigu's — along with more subtle actions to hold back or derail colleagues' work — have a toxic effect on science and scientists. They are an affront to the implicit trust between scientists that is necessary for research endeavours to exist and thrive.
  • Despite all this, there is little to prevent perpetrators re-entering science.
  • federal bodies that provide research funding have limited ability and inclination to take action in sabotage cases because they aren't interpreted as fitting the federal definition of research misconduct, which is limited to plagiarism, fabrication and falsification of research data.
  • In Bhrigu's case, administrators at the University of Michigan worked with police to investigate, thanks in part to the persistence of Ames and her supervisor, Theo Ross. "The question is, how many universities have such procedures in place that scientists can go and get that kind of support?" says Christine Boesz, former inspector-general for the US National Science Foundation in Arlington, Virginia, and now a consultant on scientific accountability. "Most universities I was familiar with would not necessarily be so responsive."
  • Some labs are known to be hyper-competitive, with principal investigators pitting postdocs against each other. But Ross's lab is a small, collegial place. At the time that Ames was noticing problems, it housed just one other graduate student, a few undergraduates doing projects, and the lab manager, Katherine Oravecz-Wilson, a nine-year veteran of the lab whom Ross calls her "eyes and ears". And then there was Bhrigu, an amiable postdoc who had joined the lab in April 2009.
  • Some people whom Ross consulted with tried to convince her that Ames was hitting a rough patch in her work and looking for someone else to blame. But Ames was persistent, so Ross took the matter to the university's office of regulatory affairs, which advises on a wide variety of rules and regulations pertaining to research and clinical care. Ray Hutchinson, associate dean of the office, and Patricia Ward, its director, had never dealt with anything like it before. After several meetings and two more instances of alcohol in the media, Ward contacted the department of public safety — the university's police force — on 9 March. They immediately launched an investigation — into Ames herself. She endured two interrogations and a lie-detector test before investigators decided to look elsewhere.
  • At 4:00 a.m. on Sunday 18 April, officers installed two cameras in the lab: one in the cold room where Ames's blots had been contaminated, and one above the refrigerator where she stored her media. Ames came in that day and worked until 5:00 p.m. On Monday morning at around 10:15, she found that her medium had been spiked again. When Ross reviewed the tapes of the intervening hours with Richard Zavala, the officer assigned to the case, she says that her heart sank. Bhrigu entered the lab at 9:00 a.m. on Monday and pulled out the culture media that he would use for the day. He then returned to the fridge with a spray bottle of ethanol, usually used to sterilize lab benches. With his back to the camera, he rummaged through the fridge for 46 seconds. Ross couldn't be sure what he was doing, but it didn't look good. Zavala escorted Bhrigu to the campus police department for questioning. When he told Bhrigu about the cameras in the lab, the postdoc asked for a drink of water and then confessed. He said that he had been sabotaging Ames's work since February. (He denies involvement in the December and January incidents.)
  • Misbehaviour in science is nothing new — but its frequency is difficult to measure. Daniele Fanelli at the University of Edinburgh, UK, who studies research misconduct, says that overtly malicious offences such as Bhrigu's are probably infrequent, but other forms of indecency and sabotage are likely to be more common. "A lot more would be the kind of thing you couldn't capture on camera," he says. Vindictive peer review, dishonest reference letters and withholding key aspects of protocols from colleagues or competitors can do just as much to derail a career or a research project as vandalizing experiments. These are just a few of the questionable practices that seem quite widespread in science, but are not technically considered misconduct. In a meta-analysis of misconduct surveys, published last year (D. Fanelli PLoS ONE 4, e5738; 2009), Fanelli found that up to one-third of scientists admit to offences that fall into this grey area, and up to 70% say that they have observed them.
  • Some say that the structure of the scientific enterprise is to blame. The big rewards — tenured positions, grants, papers in stellar journals — are won through competition. To get ahead, researchers need only be better than those they are competing with. That ethos, says Brian Martinson, a sociologist at HealthPartners Research Foundation in Minneapolis, Minnesota, can lead to sabotage. He and others have suggested that universities and funders need to acknowledge the pressures in the research system and try to ease them by means of education and rehabilitation, rather than simply punishing perpetrators after the fact.
  • Bhrigu says that he felt pressure in moving from the small college at Toledo to the much bigger one in Michigan. He says that some criticisms he received from Ross about his incomplete training and his work habits frustrated him, but he doesn't blame his actions on that. "In any kind of workplace there is bound to be some pressure," he says. "I just got jealous of others moving ahead and I wanted to slow them down."
  • At Washtenaw County Courthouse in July, having reviewed the case files, Pollard Hines delivered Bhrigu's sentence. She ordered him to pay around US$8,800 for reagents and experimental materials, plus $600 in court fees and fines — and to serve six months' probation, perform 40 hours of community service and undergo a psychiatric evaluation.
  • But the threat of a worse sentence hung over Bhrigu's head. At the request of the prosecutor, Ross had prepared a more detailed list of damages, including Bhrigu's entire salary, half of Ames's, six months' salary for a technician to help Ames get back up to speed, and a quarter of the lab's reagents. The court arrived at a possible figure of $72,000, with the final amount to be decided upon at a restitution hearing in September.
  • Ross, though, is happy that the ordeal is largely over. For the month-and-a-half of the investigation, she became reluctant to take on new students or to hire personnel. She says she considered packing up her research programme. She even questioned her own sanity, worrying that she was the one sabotaging Ames's work via "an alternate personality". Ross now wonders if she was too trusting, and urges other lab heads to "realize that the whole spectrum of humanity is in your lab. So, when someone complains to you, take it seriously."
  • She also urges others to speak up when wrongdoing is discovered. After Bhrigu pleaded guilty in June, Ross called Trempe at the University of Toledo. He was shocked, of course, and for more than one reason. His department at Toledo had actually re-hired Bhrigu. Bhrigu says that he lied about the reason he left Michigan, blaming it on disagreements with Ross. Toledo let Bhrigu go in July, not long after Ross's call.
  • Now that Bhrigu is in India, there is little to prevent him from getting back into science. And even if he were in the United States, there wouldn't be much to stop him. The National Institutes of Health in Bethesda, Maryland, through its Office of Research Integrity, will sometimes bar an individual from receiving federal research funds for a time if they are found guilty of misconduct. But Bhigru probably won't face that prospect because his actions don't fit the federal definition of misconduct, a situation Ross finds strange. "All scientists will tell you that it's scientific misconduct because it's tampering with data," she says.
  • Ames says that the experience shook her trust in her chosen profession. "I did have doubts about continuing with science. It hurt my idea of science as a community that works together, builds upon each other's work and collaborates."
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    Research integrity: Sabotage! Postdoc Vipul Bhrigu destroyed the experiments of a colleague in order to get ahead.
Weiye Loh

Open Letter to Richard Dawkins: Why Are You Still In Denial About Group Selection? : Ev... - 0 views

  • Dear Richard, I do not agree with the cynical adage "science progresses--funeral by funeral", but I fear that it might be true in your case for the subject of group selection.
  • Edward Wilson was misunderstanding kin selection as far back as Sociobiology, where he treated it as a subset of group selection ... Kin selection is not a subset of group selection, it is a logical consequence of gene selection. And gene selection is (everything that Nowak et al ought to mean by) 'standard natural selection' theory: has been ever since the neo-Darwinian synthesis of the 1930s.
  • I do not agree with the Nowak et al. article in every respect and will articulate some of my disagreements in subsequent posts. For the moment, I want to stress how alone you are in your statement about group selection. Your view is essentially pre-1975, a date that is notable not only for the publication of Sociobiology but also a paper by W.D. Hamilton, one of your heroes, who correctly saw the relationship between kin selection and group selection thanks to the work of George Price. Ever since, knowledgeable theoretical biologists have known that inclusive fitness theory includes the logic of multilevel selection, which means that altruism is selectively disadvantageous within kin groups and evolves only by virtue of groups with more altruists contributing more to the gene pool than groups with fewer altruists. The significance of relatedness is that it clusters the genes coding for altruistic and selfish behaviors into different groups.
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  • Even the contemporary theoretical biologists most critical of multilevel selection, such as Stuart West and Andy Gardner, acknowledge what you still deny. In an earlier feature on group selection published in Nature, Andy Gardner is quoted as saying "Everyone agrees that group selection occurs"--everyone except you, that is.
  • You correctly say that gene selection is standard natural selection theory. Essentially, it is a popularization of the concept of average effects in population genetics theory, which averages the fitness of alternative genes across all contexts to calculate what evolves in the total population. For that reason, it is an elementary mistake to regard gene selection as an alternative to group selection. Whenever a gene evolves in the total population on the strength of group selection, despite being selectively disadvantageous within groups, it has the highest average effect compared to the genes that it replaced. Please consult the installment of my "Truth and Reconciliation for Group Selection" series titled "Naïve Gene Selectionism" for a refresher course. While you're at it, check out the installment titled "Dawkins Protests--Too Much".
  • The Nowak et al. article includes several critiques of inclusive fitness theory that need to be distinguished from each other. One issue is whether inclusive fitness theory is truly equivalent to explicit models of evolution in multi-group populations, or whether it makes so many simplifying assumptions that it restricts itself to a small region of the parameter space. A second issue is whether benefiting collateral kin is required for the evolution of eusociality and other forms of prosociality. A third issue is whether inclusive fitness theory, as understood by the average evolutionary biologist and the general public, bears any resemblance to inclusive fitness theory as understood by the cognoscenti.
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    Open Letter to Richard Dawkins: Why Are You Still In Denial About Group Selection?
Weiye Loh

Epiphenom: Suicide in American colleges - the importance of existential well being - 0 views

  • Lindsay Taliaferro, a doctoral candidate at the University of Florida, surveyed over 400 of her fellow students. The response rate was high - around 90%. The good news is that, for the most part, they were not suicidal! On average, they scored 11 on a 70-point scale of suicidal thinking.
  • as expected, those who reported high levels of religious well being (e.g. that they find strength or support from God) or involvement in religious activities had fewer suicidal thoughts.
  • She also asked how hopeless or depressed the students felt, and how much social support they felt they got. When she took this into account, the effects of religion disappeared. What this suggests is that religious well-being and involvement have whatever effects they have by reducing hopelessness and depression, and by increasing social support.
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  • what is surprising is that she found a third factor that was even more important that religion and social support. That factor was "Existential Well-Being", which relates to things such as feeling fulfilled and satisfied with life, and finding meaning and purpose in life.
  • Existential Well-Being remained important even after taking into account hopelessness, depression and social support. In other words, even if you feel hopeless, depressed, and alone, existential well-being (unlike religious well-being) can ease suicidal thoughts.
  • this does seem to fit in with other studies which have shown that spirituality does not reduce suicidal thoughts,and that feeling close to God is linked to a history of depression, whereas existential well being is linked to dramatically less depression.
  • Results from the present investigation indicate that many college students did not demonstrate high involvement in organized religion. Yet they reported high levels of spiritual well-being, especially existential well-being, and low levels of suicidal ideation. Furthermore, results highlighted existential well-being as an important factor associated with lower levels of suicidal ideation among college students. Overall, these findings suggest that a strategy for reducing distress and preventing suicide among college students may involve exploring mechanisms that nurture a sense of meaning in life in individuals for whom organized religion remains unimportant. Health professionals may have more success in improving young people’s sense of meaning and purpose by methods other than an increase in faith, participation in organized religion, or other indicators of religiosity.
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    Suicide
Weiye Loh

nanopolitan: "Lies, Damned Lies, and Medical Science" - 0 views

  • That's the title of The Atlantic profile of Dr. John Ioannidis who "has spent his career challenging his peers by exposing their bad science." His 2005 paper in PLoS Medicine was on why most published research findings are false.
  • Ioannidis anticipated that the community might shrug off his findings: sure, a lot of dubious research makes it into journals, but we researchers and physicians know to ignore it and focus on the good stuff, so what’s the big deal? The other paper headed off that claim.
  • He zoomed in on 49 of the most highly regarded research findings in medicine over the previous 13 years, as judged by the science community’s two standard measures: the papers had appeared in the journals most widely cited in research articles, and the 49 articles themselves were the most widely cited articles in these journals.
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  • Of the 49 articles, 45 claimed to have uncovered effective interventions. Thirty-four of these claims had been retested, and 14 of these, or 41 percent, had been convincingly shown to be wrong or significantly exaggerated. If between a third and a half of the most acclaimed research in medicine was proving untrustworthy, the scope and impact of the problem were undeniable. That article was published in the Journal of the American Medical Association. [here's the link.]
  • David Freedman -- has quite a bit on the sociology of research in medical science. Here are a few quotes:
  • Even when the evidence shows that a particular research idea is wrong, if you have thousands of scientists who have invested their careers in it, they’ll continue to publish papers on it,” he says. “It’s like an epidemic, in the sense that they’re infected with these wrong ideas, and they’re spreading it to other researchers through journals.”
  • the peer-review process often pressures researchers to shy away from striking out in genuinely new directions, and instead to build on the findings of their colleagues (that is, their potential reviewers) in ways that only seem like breakthroughs—as with the exciting-sounding gene linkages (autism genes identified!) and nutritional findings (olive oil lowers blood pressure!) that are really just dubious and conflicting variations on a theme.
  • The ultimate protection against research error and bias is supposed to come from the way scientists constantly retest each other’s results—except they don’t. Only the most prominent findings are likely to be put to the test, because there’s likely to be publication payoff in firming up the proof, or contradicting it.
  • Doctors may notice that their patients don’t seem to fare as well with certain treatments as the literature would lead them to expect, but the field is appropriately conditioned to subjugate such anecdotal evidence to study findings.
  • [B]eing wrong in science is fine, and even necessary—as long as scientists recognize that they blew it, report their mistake openly instead of disguising it as a success, and then move on to the next thing, until they come up with the very occasional genuine breakthrough. But as long as careers remain contingent on producing a stream of research that’s dressed up to seem more right than it is, scientists will keep delivering exactly that.
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    "Lies, Damned Lies, and Medical Science"
Weiye Loh

Fatalism (Stanford Encyclopedia of Philosophy) - 0 views

  • This view may be argued for in various ways: by appeal to logical laws and metaphysical necessities; by appeal to the existence and nature of God; by appeal to causal determinism. When argued for in the first way, it is commonly called “Logical fatalism” (or, in some cases, “Metaphysical fatalism”); when argued for in the second way, it is commonly called “Theological fatalism”. When argued for in the third way it is not now commonly referred to as “fatalism” at all, and such arguments will not be discussed here.
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    "fatalism" is commonly used to refer to an attitude of resignation in the face of some future event or events which are thought to be inevitable
Weiye Loh

Arsenic bacteria - a post-mortem, a review, and some navel-gazing | Not Exactly Rocket ... - 0 views

  • t was the big news that wasn’t. Hyperbolic claims about the possible discovery of alien life, or a second branch of life on Earth, turned out to be nothing more than bacteria that can thrive on arsenic, using it in place of phosphorus in their DNA and other molecules. But after the initial layers of hype were peeled away, even this extraordinar
  • This is a chronological roundup of the criticism against the science in the paper itself, ending with some personal reflections on my own handling of the story (skip to Friday, December 10th for that bit).
  • Thursday, December 2nd: Felisa Wolfe-Simon published a paper in Science, claiming to have found bacteria in California’s Mono Lake that can grow using arsenic instead of phosphorus. Given that phosphorus is meant to be one of six irreplaceable elements, this would have been a big deal, not least because the bacteria apparently used arsenic to build the backbones of their DNA molecules.
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  • In my post, I mentioned some caveats. Wolfe-Simon isolated the arsenic-loving strain, known as GFAJ-1, by growing Mono Lake bacteria in ever-increasing concentrations of arsenic while diluting out the phosphorus. It is possible that the bacteria’s arsenic molecules were an adaptation to the harsh environments within the experiment, rather than Mono Lake itself. More importantly, there were still detectable levels of phosphorus left in the cells at the end of the experiment, although Wolfe-Simon claimed that the bacteria shouldn’t have been able to grow on such small amounts.
  • signs emerged that NASA weren’t going to engage with the criticisms. Dwayne Brown, their senior public affairs officer, highlighted the fact that the paper was published in one of the “most prestigious scientific journals” and deemed it inappropriate to debate the science using the same media and bloggers who they relied on for press coverage of the science. Wolfe-Simon herself tweeted that “discussion about scientific details MUST be within a scientific venue so that we can come back to the public with a unified understanding.”
  • Jonathan Eisen says that “they carried out science by press release and press conference” and “are now hypocritical if they say that the only response should be in the scientific literature.” David Dobbs calls the attitude “a return to pre-Enlightenment thinking”, and rightly noted that “Rosie Redfield is a peer, and her blog is peer review”.
  • Chris Rowan agreed, saying that what happens after publication is what he considers to be “real peer review”. Rowan said, “The pre-publication stuff is just a quality filter, a check that the paper is not obviously wrong – and an imperfect filter at that. The real test is what happens in the months and years after publication.”Grant Jacobs and others post similar thoughts, while Nature and the Columbia Journalism Review both cover the fracas.
  • Jack Gilbert at the University of Chicago said that impatient though he is, peer-reviewed journals are the proper forum for criticism. Others were not so kind. At the Guardian, Martin Robbins says that “at almost every stage of this story the actors involved were collapsing under the weight of their own slavish obedience to a fundamentally broken… well… ’system’” And Ivan Oransky noted that NASA failed to follow its own code of conduct when announcing the study.
  • Dr Isis said, “If question remains about the voracity of these authors findings, then the only thing that is going to answer that doubt is data.  Data cannot be generated by blog discussion… Talking about digging a ditch never got it dug.”
  • it is astonishing how quickly these events unfolded and the sheer number of bloggers and media outlets that became involved in the criticism. This is indeed a brave new world, and one in which we are all the infamous Third Reviewer.
  • I tried to quell the hype around the study as best I could. I had the paper and I think that what I wrote was a fair representation of it. But, of course, that’s not necessarily enough. I’ve argued before that journalists should not be merely messengers – we should make the best possible efforts to cut through what’s being said in an attempt to uncover what’s actually true. Arguably, that didn’t happen although to clarify, I am not saying that the paper is rubbish or untrue. Despite the criticisms, I want to see the authors respond in a thorough way or to see another lab attempt replicate the experiments before jumping to conclusions.
  • the sheer amount of negative comment indicates that I could have been more critical of the paper in my piece. Others have been supportive in suggesting that this was more egg on the face of the peer reviewers and indeed, several practicing scientists took the findings on face value, speculating about everything from the implications for chemotherapy to whether the bacteria have special viruses. The counter-argument, which I have no good retort to, is that peer review is no guarantee of quality, and that writers should be able to see through the fog of whatever topic they write about.
  • my response was that we should expect people to make reasonable efforts to uncover truth and be skeptical, while appreciating that people can and will make mistakes.
  • it comes down to this: did I do enough? I was certainly cautious. I said that “there is room for doubt” and I brought up the fact that the arsenic-loving bacteria still contain measurable levels of phosphorus. But I didn’t run the paper past other sources for comment, which I typically do it for stories that contain extraordinary claims. There was certainly plenty of time to do so here and while there were various reasons that I didn’t, the bottom line is that I could have done more. That doesn’t always help, of course, but it was an important missed step. A lesson for next time.
  • I do believe that it you’re going to try to hold your profession to a higher standard, you have to be honest and open when you’ve made mistakes yourself. I also think that if you cover a story that turns out to be a bit dodgy, you have a certain responsibility in covering the follow-up
  • A basic problem with is the embargo. Specifically that journalists get early access, while peers – other specialists in the field – do not. It means that the journalist, like yourself, can rely only on the original authors, with no way of getting other views on the findings. And it means that peers can’t write about the paper when the journalists (who, inevitably, do a positive-only coverage due to the lack of other viewpoints) do, but will be able to voice only after they’ve been able to digest the paper and formulate a response.
  • No, that’s not true. The embargo doens’t preclude journalists from sending papers out to other authors for review and comment. I do this a lot and I have been critical about new papers as a result, but that’s the step that I missed for this story.
Weiye Loh

The boy who knew too much: a child prodigy: Time Magazine, Zuckerberg and Assange. - 0 views

  • It had invited readers from all over the world, to vote on whom they thought should be Time Magazine's Person of the Year, 2010. The world duly voted. They chose Julian Assange, with 382,026 votes, far outpacing the runner up, Recep Erdogan, at 233,639 votes. One would, therefore have thought, were Time Magazine a democracy, that Julian Assange would have won. He didn't. Mark Zuckerberg, with 18,353 votes, won. To be fair, Time Magazine did note, in its pages, that the final decision rests with its editors - however it does make clear that Time Magazine's competition is not a democratic one. The voice of the world's people is not one that Time Magazine listens to, on this issue, at least.
  • Time Magazine is, of course in a difficult position. If it had gone with the world's voters and put Julian Assange on its cover, as Time's Person of the Year, it would have offended the US government, with whom Assange is presently battling. So, Time may have felt it had no option but to bury Assange's result, by putting him in third position, as they did. Yet, that opens them up for another problem: offending those very same voters. About one quarter of all the votes cast, were for Assange. That suggests that, most probably, one quarter of its readers support Assange as the top choice. Those people have been snubbed. Their views have been dismissed. That could have repercussions for the sales of Time Magazine since there is one thing that is very obvious about Assange's supporters: they are very passionate. So, Time Magazine, could now be in the position of having irked many passionate people, who are likely to do word of mouth damage to Time Magazine.
  • If Time does not wish to be held to the views of its readers, then it should not even have a poll, on the matter of whom should be Time's Person of the Year. It is a kind of faux engagement and fake democracy, to do so.
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  • Mark Zuckerberg does not appear to be that popular a figure. When you consider that Facebook has 600 million users, 18,353 votes for him, on Time's poll seems mighty few. Whatever Facebook users think of Facebook, they don't go out of their way to be supportive of Zuckerberg, as a public figure
Weiye Loh

Freedom's our defence - 0 views

  • Few things are more crooked in India than the discourse on free speech and its relation to violence. Rather than focusing on the basic framework governing speech, the debate quickly descends into the politics of double standards.
  • The first is, could Husain have gotten away with taking artistic liberties with Islam the way he did with Hindu icons? On this view free speech cases are not about free speech. They are the tests of two things. Does the state favour one community over the other in the way it interprets what is offensive and what is permissible?
  • Second, what exactly are the protocols that govern offensive art? Are these standards applied uniformly across different domains? And third, whether Husain’s acceptance of Qatari citizenship is exactly a ringing endorsement of the values of a liberal democracy? These political questions will continue to cloud the fundamental issue: can India as a society handle freedom of expression in a way that befits a liberal democracy?
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  • the state’s reaction is typical: legitimise the violence by classifying the purported article as the culprit rather than those who took offence at it and engaged in violence. While our laws on speech undertaken with the malicious intent to give offence, or those governing attempts to produce enmity, are well intentioned, they have made the climate for free speech more, rather than less, precarious.
  • the simple fact that the state signals that it will easily punish those who engage in offensive speech creates incentives for offence mongering. Instead of sending a signal that a very high bar has to be crossed before speech is proscribed, the state essentially tells the people: if you can incite violence, or show that you are deeply offended, you will have your way.
  • A lot of representations of religion are needlessly gratuitous. But if we legitimise the taking of offence there will be more provocations, not less. The law should send a clear message that we live in a world where people cannot be protected from assorted things like Danish cartoons, Husain paintings, burqa lampoons or speculative novels on godly love. And religious believers commit the ultimate blasphemy by thinking that they need to protect their gods rather than their gods protecting them
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    Freedom's our defence
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