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Weiye Loh

From Abstract to News Release to Story, a Tilt to the 'Front-Page Thought' - NYTimes.com - 0 views

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    "In the post on research on extreme rainfall and warming, Gavin Schmidt, the NASA climate scientist and Real Climate blogger, described the misinterpretation of some paper abstracts as mainly reflecting a cultural divide: "Here we show" statements are required by Nature and Science to clearly lay out the point of the paper. If you don't include it, they will write it in. The caveats/uncertainties/issues all come later. I think the confusion is more cultural than anything. No one at Nature or Science or any of the authors in any subject think that uncertainties are zero, but they require a clear statement of the point of the paper within their house style. I think that conclusion misses the reality that, particularly in the world of online communication of science, abstracts are not merely for colleagues who know the shorthand, but have different audiences who'll have different ways of interpreting phrases such as "here we show.""
Weiye Loh

Roger Pielke Jr.'s Blog: Mike Daisey and Higher Truths - 0 views

  • Real life is messy. And as a general rule, the more theatrical the story you hear, and the more it divides the world into goodies vs baddies, the less reliable that story is going to be.
  • some people do feel that certain issues are so important that there should be cause in political debates to overlook lies or misrepresentations in service of a "larger truth" (Yellow cake, anyone?). I have seen this attitude for years in the climate change debate (hey look, just today), and often condoned by scientists and journalists alike.
  • the "global warming: yes or no?" debate has become an obstacle to effective policy action related to climate. Several of these colleagues suggested that I should downplay the policy implications of my work showing that for a range of phenomena and places, future climate impacts depend much more on growing human vulnerability to climate than on projected changes in climate itself (under the assumptions of the Intergovernmental Panel on Climate Change). One colleague wrote, "I think we have a professional (or moral?) obligation to be very careful what we say and how we say it when the stakes are so high." In effect, some of these colleagues were intimating that ends justify means or, in other words, doing the "right thing" for the wrong reasons is OK.
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  • When science is used (and misused) in political advocacy, there are frequent opportunities for such situations to arise.
  • I don't think you're being fair to Mike Lemonick. In the article by him that you cite, MIke's provocative question was framed in the context of an analogy he was making to the risks of smoking. For example, in that article, he also says: "So should the overall message be that nobody knows anything? I don’t think so. We would never want to pretend the uncertainty isn’t there, since that would be dishonest. But featuring it prominently is dishonest ,too, just as trumpeting uncertainty in the smoking-cancer connection would have been."Thus, I think you're reading way too much into Mike's piece. That said, I do agree with you that there are implications of the Daisey case for climate communicators and climate journalism. My own related post is here: http://www.collide-a-scape.com/2012/03/19/the-seduction-of-narrative/"
  • I don't want journalists shading the truth in a desire to be "effective" in some way. That is Daisey's tradeoff too.
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    Recall that in the aftermath of initial revelations about Peter Gleick's phishing of the Heartland Institute, we heard defenses of his action that included claims that he was only doing the same thing that journalists do to the importance of looking beyond Gleick's misdeeds at the "larger truth." Consider also what was described in the UEA emails as "pressure to present a nice tidy story" related to climate science as well as the IPCC's outright falsification related to disasters and climate change. Such shenanigans so endemic in the climate change debate that when a journalist openly asks whether the media should tell the whole truth about climate change, no one even bats an eye. 
Jun Jie Tan

Shorter, Fatter, Balder: Men's misleading online profiles - 0 views

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    Ethical problem Anonymity affords men whom are not confident of themselves to mislead women on dating sites with pictures of someone more attractive. This leads to general loss of trust, security and expectation in the online dating landscape. Ethical question Although men would eventually disappoint the women when they meet offline, they almost always "misrepresent" themselves and inflate their personalities online. Shouldn't there be a limit to impression management, be it community-based sanction or government regulation?
Weiye Loh

Balderdash - 0 views

  • A letter Paul wrote to complain about the "The Dead Sea Scrolls" exhibition at the Arts House:To Ms. Amira Osman (Marketing and Communications Manager),cc.Colin Goh, General Manager,Florence Lee, Depury General ManagerDear Ms. Osman,I visited the Dead Sea Scrolls “exhibition” today with my wife. Thinking that it was from a legitimate scholarly institute or (how naïve of me!) the Israel Antiquities Authority, I was looking forward to a day of education and entertainment.Yet when I got it, much of the exhibition (and booklets) merely espouses an evangelical (fundamentalist) view of the Bible – there are booklets on the inerrancy of the Bible, on how archaeology has proven the Bible to be true etc.Apart from these there are many blatant misrepresentations of the state of archaeology and mainstream biblical scholarship:a) There was initial screening upon entry of a 5-10 minute pseudo-documentary on the Dead Sea Scrolls. A presenter (can’t remember the name) was described as a “biblical archaeologist” – a term that no serious archaeologist working in the Levant would apply to him or herself. (Some prefer the term “Syro-Palestinian archaeologist” but almost all reject the term “biblical archaeologist”). See the book by Thomas W. Davis, “Shifting Sands: The Rise and Fall of Biblical Archaeology”, Oxford, New York 2004. Davis is an actual archaeologist working in the field and the book tells why the term “Biblical archaeologist” is not considered a legitimate term by serious archaeologist.b) In the same presentation, the presenter made the erroneous statement that the entire old testament was translated into Greek in the third century BCE. This is a mistake – only the Pentateuch (the first five books of the Old Testament) was translated during that time. Note that this ‘error’ is not inadvertent but is a familiar claim by evangelical apologists who try to argue for an early date of all the books of the Old testament - if all the books have been translated by the third century BCE obviously these books must all have been written before then! This flies against modern scholarship which show that some books in the Old Testament such as the Book of Daniel was written only in the second century BCE]The actual state of scholarship on the Septuagint [The Greek translation of the Bible] is accurately given in the book by Ernst Würthwein, “The Text of the Old Testament” – Eerdmans 1988 pp.52-54c) Perhaps the most blatant error was one which claimed that the “Magdalene fragments” – which contains the 26th chapter of the Gospel of Matthew is dated to 50 AD!!! Scholars are unanimous in dating these fragments to 200 AD. The only ‘scholar’ cited that dated these fragments to 50 AD was the German papyrologist Carsten Thiede – a well know fundamentalist. This is what Burton Mack (a critical – legitimate – NT scholar) has to say about Thiede’s eccentric dating “From a critical scholar's point of view, Thiede's proposal is an example of just how desperate the Christian imagination can become in the quest to argue for the literal facticity of the Christian gospels” [Mack, Burton L., “Who Wrote the New Testament?:The Making of the Christian Myth” HarperCollins, San Francisco 1995] Yet the dating of 50 AD is presented as though it is a scholarly consensus position!In fact the last point was so blatant that I confronted the exhibitors. (Tak Boleh Tahan!!) One American exhibitor told me that “Yes, it could have been worded differently, but then we would have to change the whole display” (!!). When I told him that this was not a typo but a blatant attempt to deceive, he mentioned that Theide’s views are supported by “The Dallas Theological Seminary” – another well know evangelical institute!I have no issue with the religious strengthening their faith by having their own internal exhibitions on historical artifacts etc. But when it is presented to the public as a scholarly exhibition – this is quite close to being dishonest.I felt cheated of the $36 dollars I paid for the tickets and of the hour that I spent there before realizing what type of exhibition it was.I am disappointed with The Art House for show casing this without warning potential visitors of its clear religious bias.Yours sincerely,Paul TobinTo their credit, the Arts House speedily replied.
    • Weiye Loh
       
      The issue of truth is indeed so maddening. Certainly, the 'production' of truth has been widely researched and debated by scholars. Spivak for example, argued for the deconstruction by means of questioning the privilege of identity so that someone is believed to have the truth. And along the same line, albeit somewhat misunderstood I feel, It was mentioned in class that somehow people who are oppressed know better.
Weiye Loh

The Fake Scandal of Climategate - 0 views

  • The most comprehensive inquiry was the Independent Climate Change Email Review led by Sir Muir Russell, commissioned by UEA to examine the behaviour of the CRU scientists (but not the scientific validity of their work). It published its final report in July 2010
  • It focused on what the CRU scientists did, not what they said, investigating the evidence for and against each allegation. It interviewed CRU and UEA staff, and took 111 submissions including one from CRU itself. And it also did something the media completely failed to do: it attempted to put the actions of CRU scientists into context.
    • Weiye Loh
       
      Data, in the form of email correspondence, requires context to be interpreted "objectively" and "accurately" =)
  • The Review went back to primary sources to see if CRU really was hiding or falsifying their data. It considered how much CRU’s actions influenced the IPCC’s conclusions about temperatures during the past millennium. It commissioned a paper by Dr Richard Horton, editor of The Lancet, on the context of scientific peer review. And it asked IPCC Review Editors how much influence individuals could wield on writing groups.
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  • Many of these are things any journalist could have done relatively easily, but few ever bothered to do.
  • the emergence of the blogosphere requires significantly more openness from scientists. However, providing the details necessary to validate large datasets can be difficult and time-consuming, and how FoI laws apply to research is still an evolving area. Meanwhile, the public needs to understand that science cannot and does not produce absolutely precise answers. Though the uncertainties may become smaller and better constrained over time, uncertainty in science is a fact of life which policymakers have to deal with. The chapter concludes: “the Review would urge all scientists to learn to communicate their work in ways that the public can access and understand”.
  • email is less formal than other forms of communication: “Extreme forms of language are frequently applied to quite normal situations by people who would never use it in other communication channels.” The CRU scientists assumed their emails to be private, so they used “slang, jargon and acronyms” which would have been more fully explained had they been talking to the public. And although some emails suggest CRU went out of their way to make life difficult for their critics, there are others which suggest they were bending over backwards to be honest. Therefore the Review found “the e-mails cannot always be relied upon as evidence of what actually occurred, nor indicative of actual behaviour that is extreme, exceptional or unprofessional.” [section 4.3]
  • when put into the proper context, what do these emails actually reveal about the behaviour of the CRU scientists? The report concluded (its emphasis):
  • we find that their rigour and honesty as scientists are not in doubt.
  • we did not find any evidence of behaviour that might undermine the conclusions of the IPCC assessments.
  • “But we do find that there has been a consistent pattern of failing to display the proper degree of openness, both on the part of the CRU scientists and on the part of the UEA, who failed to recognize not only the significance of statutory requirements but also the risk to the reputation of the University and indeed, to the credibility of UK climate science.” [1.3]
  • The argument that Climategate reveals an international climate science conspiracy is not really a very skeptical one. Sure, it is skeptical in the weak sense of questioning authority, but it stops there. Unlike true skepticism, it doesn’t go on to objectively examine all the evidence and draw a conclusion based on that evidence. Instead, it cherry-picks suggestive emails, seeing everything as incontrovertible evidence of a conspiracy, and concludes all of mainstream climate science is guilty by association. This is not skepticism; this is conspiracy theory.
    • Weiye Loh
       
      How then do we know that we have examined ALL the evidence? What about the context of evidence then? 
  • The media dropped the ball There is a famous quotation attributed to Mark Twain: “A lie can travel halfway around the world while the truth is putting on its shoes.” This is more true in the internet age than it was when Mark Twain was alive. Unfortunately, it took months for the Climategate inquiries to put on their shoes, and by the time they reported, the damage had already been done. The media acted as an uncritical loudspeaker for the initial allegations, which will now continue to circulate around the world forever, then failed to give anywhere near the same amount of coverage to the inquiries clearing the scientists involved. For instance, Rupert Murdoch’s The Australian published no less than 85 stories about Climategate, but not one about the Muir Russell inquiry.
  • Even the Guardian, who have a relatively good track record on environmental reporting and were quick to criticize the worst excesses of climate conspiracy theorists, could not resist the lure of stolen emails. As George Monbiot writes, journalists see FoI requests and email hacking as a way of keeping people accountable, rather than the distraction from actual science which they are to scientists. In contrast, CRU director Phil Jones says: “I wish people would spend as much time reading my scientific papers as they do reading my e-mails.”
  • This is part of a broader problem with climate change reporting: the media holds scientists to far higher standards than it does contrarians. Climate scientists have to be right 100% of the time, but contrarians apparently can get away with being wrong nearly 100% of the time. The tiniest errors of climate scientists are nitpicked and blown out of all proportion, but contrarians get away with monstrous distortions and cherry-picking of evidence. Around the same time The Australian was bashing climate scientists, the same newspaper had no problem publishing Viscount Monckton’s blatant misrepresentations of IPCC projections (not to mention his demonstrably false conspiracy theory that the Copenhagen summit was a plot to establish a world government).
  • In the current model of environmental reporting, the contrarians do not lose anything by making baseless accusations. In fact, it is in their interests to throw as much mud at scientists as possible to increase the chance that some of it will stick in the public consciousness. But there is untold damage to the reputation of the scientists against whom the accusations are being made. We can only hope that in future the media will be less quick to jump to conclusions. If only editors and producers would stop and think for a moment about what they’re doing: they are playing with the future of the planet.
  • As worthy as this defense is, surely this is the kind of political bun-fight SkS has resolutely stayed away from since its inception. The debate can only become a quagmire of competing claims, because this is part of an adversarial process that does not depend on, or even require, scientific evidence. Only by sticking resolutely to the science and the advocacy of the scientific method can SkS continue to avoid being drowned in the kind of mud through which we are obliged to wade elsewhere.
  • I disagree with gp. It is past time we all got angry, very angry, at what these people have done and continue to do. Dispassionate science doesn't cut it with the denial industry or with the media (and that "or" really isn't there). It's time to fight back with everything we can throw back at them.
  • The fact that three quick fire threads have been run on Climatgate on this excellent blog in the last few days is an indication that Climategate (fairly or not) has does serious damage to the cause of AGW activism. Mass media always overshoots and exaggerates. The AGW alarmists had a very good run - here in Australia protagonists like Tim Flannery and our living science legend Robin Williams were talking catastrophe - the 10 year drought was definitely permanent climate change - rivers might never run again - Robin (100 metre sea level rise) Williams refused to even read the Climategate emails. Climategate swung the pendumum to the other extreme - the scientists (nearly all funded by you and me) were under the pump. Their socks rubbed harder on their sandals as they scrambled for clear air. Cries about criminal hackers funded by big oil, tobacco, rightist conspirators etc were heard. Panchuri cried 'voodoo science' as he denied ever knowing about objections to the preposterous 2035 claim. How things change in a year. The drought is broken over most of Australia - Tim Flannery has gone quiet and Robin Williams is airing a science journo who says that AGW scares have been exaggerated. Some balance might have been restored as the pendulum swung, and our hard working misunderstood scientist bretheren will take more care with their emails in future.
  • "Perhaps a more precise description would be that a common pattern in global warming skeptic arguments is to focus on narrow pieces of evidence while ignoring other evidence that contradicts their argument." And this is the issue the article discuss, but in my opinion this article is in guilt of this as well. It focus on a narrow set of non representative claims, claims which is indeed pure propaganda by some skeptics, however the article also suggest guilt buy association and as such these propaganda claims then gets attributed to the be opinions of the entire skeptic camp. In doing so, the OP becomes guilty of the very same issue the OP tries to address. In other words, the issue I try to raise is not about the exact numbers or figures or any particular facts but the fact that the claim I quoted is obvious nonsense. It is nonsense because it a sweeping statement with no specifics and as such it is an empty statement and means nothing. A second point I been thinking about when reading this article is why should scientist be granted immunity to dirty tricks/propaganda in a political debate? Is it because they speak under the name of science? If that is the case, why shall we not grant the same right to other spokesmen for other organization?
    • Weiye Loh
       
      The aspiration to examine ALL evidence is again called into question here. Is it really possible to examine ALL evidence? Even if we have examined them, can we fully represent our examination? From our lab, to the manuscript, to the journal paper, to the news article, to 140characters tweets?
Weiye Loh

Before Assange there was Jayakumar: Context, realpolitik, and the public inte... - 0 views

  • Singapore Ministry of Foreign Affairs spokesman’s remarks in the Wall Street Journal Asia piece, “Leaked cable spooks some U.S. sources” dated 3 Dec 2010. The paragraph in question went like this: “Others laid blame not on working U.S. diplomats, but on Wikileaks. Singapore’s Ministry of Foreign Affairs said it had “deep concerns about the damaging action of Wikileaks.” It added, ‘it is critical to protect the confidentiality of diplomatic and official correspondence.’” (emphasis my own)
  • on 25 Jan 2003, the then Singapore Minister of Foreign Affairs and current Senior Minister without portfolio, Professor S Jayakumar, in an unprecedented move, unilaterally released all diplomatic and official correspondence relating to confidential discussions on water negotiations between Singapore and Malaysia from the year 2000. In a parliamentary speech that would have had Julian Assange smiling from ear to ear, Jayakumar said, “We therefore have no choice but to set the record straight by releasing these documents for people to judge for themselves the truth of the matter.” The parliamentary reason for the unprecedented release of information was the misrepresentations made by Malaysia over the price of water, amongst others.
  • The then Malaysian Prime Minister, Mahathir’s response to Singapore’s pre-Wikileak wikileak was equally quote-worthy, “I don’t feel nice. You write a letter to your girlfriend. And your girlfriend circulates it to all her boyfriends. I don’t think I’ll get involved with that girl.”
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  • Mahathir did not leave it at that. He foreshadowed the Wikileak-chastised countries of today saying what William, the Singapore Ministry of Foreign Affairs, the US and Iran today, amongst others, must agree with, “It’s very difficult now for us to write letters at all because we might as well negotiate through the media.”
  • I proceeded to the Ministry of Foreign Affairs homepage to search for the full press release. As I anticipated, there was a caveat. This is the press release in full: In response to media queries on the WikiLeaks release of confidential and secret-graded US diplomatic correspondence, the MFA Spokesman expressed deep concerns about the damaging action of WikiLeaks. It is critical to protect the confidentiality of diplomatic and official correspondence, which is why Singapore has the Officials Secrets Act. In particular, the selective release of documents, especially when taken out of context, will only serve to sow confusion and fail to provide a complete picture of the important issues that were being discussed amongst leaders in the strictest of confidentiality.
  • The sentence in red seems to posit that the selective release of documents can be legitimised if released documents are not taken out of context. If this interpretation is true, then one can account for the political decision to release confidential correspondence covering the Singapore and Malaysia water talks referred to above. In parallel, one can imagine Assange or his supporters arguing that lies of weapons of mass destruction in Iraq and the advent of abject two-faced politics today to be sufficient grounds to justify the actions of Wikileaks. As for the arguments about confidentiality and official correspondence, the events in parliament in 2003 tell us no one should underestimate the ability of nation-states to do an Assange if it befits their purpose – be it directly, as Jayakumar did, or indirectly, through the media or some other medium of influence.
  • Timothy Garton Ash put out the dilemma perfectly when he said, “There is a public interest in understanding how the world works and what is done in our name. There is a public interest in the confidential conduct of foreign policy. The two public interests conflict.”
  • the advent of technology will only further blur the lines between these two public interests, if it has not already. Quite apart from technology, the absence of transparent and accountable institutions may also serve to guarantee the prospect of more of such embarrassing leaks in future.
  • In August 2009, there was considerable interest in Singapore about the circumstances behind the departure of Chip Goodyear, former CEO of the Australian mining giant BHP Billiton, from the national sovereign wealth fund, Temasek Holdings. Before that, all the public knew was – in the name of leadership renewal – Chip Goodyear had been carefully chosen and apparently hand-picked to replace Ho Ching as CEO of Temasek Holdings. In response to Chip’s untimely departure, Finance Minister Tharman Shanmugaratnam was quoted, “People do want to know, there is curiosity, it is a matter of public interest. That is not sufficient reason to disclose information. It is not sufficient that there be curiosity and interest that you want to disclose information.”
  • Overly secretive and furtive politicians operating in a parliamentary democracy are unlikely to inspire confidence among an educated citizenry either, only serving to paradoxically fuel public cynicism and conspiracy theories.
  • I believe that government officials and politicians who perform their jobs honourably have nothing to fear from Wikileaks. I would admit that there is an inherent naivety and idealism in this position. But if the lesson from the Wikileaks episode portends a higher standard of ethical conduct, encourages transparency and accountability – all of which promote good governance, realpolitik notwithstanding – then it is perhaps a lesson all politicians and government officials should pay keen attention to.
  • Post-script: “These disclosures are largely of analysis and high-grade gossip. Insofar as they are sensational, it is in showing the corruption and mendacity of those in power, and the mismatch between what they claim and what they do….If American spies are breaking United Nations rules by seeking the DNA biometrics of the UN director general, he is entitled to hear of it. British voters should know what Afghan leaders thought of British troops. American (and British) taxpayers might question, too, how most of the billions of dollars going in aid to Afghanistan simply exits the country at Kabul airport.” –Simon Jenkins, Guardian
Weiye Loh

If suspect Jared Lee Loughner has schizophrenia, would that make him more likely to go ... - 0 views

  • Shortly after Jared Lee Loughner had been identified as the alleged shooter of Arizona Rep. Gabrielle Giffords, online sleuths turned up pages of rambling text and videos he had created. A wave of amateur diagnoses soon followed, most of which concluded that Loughner was not so much a political extremist as a man suffering from "paranoid schizophrenia."
  • For many, the investigation will stop there. No need to explore personal motives, out-of-control grievances or distorted political anger. The mere mention of mental illness is explanation enough. This presumed link between psychiatric disorders and violence has become so entrenched in the public consciousness that the entire weight of the medical evidence is unable to shift it. Severe mental illness, on its own, is not an explanation for violence, but don't expect to hear that from the media in the coming weeks.
  • Seena Fazel is an Oxford University psychiatrist who has led the most extensive scientific studies to date of the links between violence and two of the most serious psychiatric diagnoses—schizophrenia and bipolar disorder, either of which can lead to delusions, hallucinations, or some other loss of contact with reality. Rather than looking at individual cases, or even single studies, Fazel's team analyzed all the scientific findings they could find. As a result, they can say with confidence that psychiatric diagnoses tell us next to nothing about someone's propensity or motive for violence.
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  • The fact that mental illness is so often used to explain violent acts despite the evidence to the contrary almost certainly flows from how such cases are handled in the media. Numerous studies show that crimes by people with psychiatric problems are over-reported, usually with gross inaccuracies that give a false impression of risk. With this constant misrepresentation, it's not surprising that the public sees mental illness as an easy explanation for heartbreaking events. We haven't yet learned all the details of the tragic shooting in Arizona, but I suspect mental illness will be falsely accused many times over.
Weiye Loh

Skepticblog » A Creationist Challenge - 0 views

  • The commenter starts with some ad hominems, asserting that my post is biased and emotional. They provide no evidence or argument to support this assertion. And of course they don’t even attempt to counter any of the arguments I laid out. They then follow up with an argument from authority – he can link to a PhD creationist – so there.
  • The article that the commenter links to is by Henry M. Morris, founder for the Institute for Creation Research (ICR) – a young-earth creationist organization. Morris was (he died in 2006 following a stroke) a PhD – in civil engineering. This point is irrelevant to his actual arguments. I bring it up only to put the commenter’s argument from authority into perspective. No disrespect to engineers – but they are not biologists. They have no expertise relevant to the question of evolution – no more than my MD. So let’s stick to the arguments themselves.
  • The article by Morris is an overview of so-called Creation Science, of which Morris was a major architect. The arguments he presents are all old creationist canards, long deconstructed by scientists. In fact I address many of them in my original refutation. Creationists generally are not very original – they recycle old arguments endlessly, regardless of how many times they have been destroyed.
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  • Morris also makes heavy use of the “taking a quote out of context” strategy favored by creationists. His quotes are often from secondary sources and are incomplete.
  • A more scholarly (i.e. intellectually honest) approach would be to cite actual evidence to support a point. If you are going to cite an authority, then make sure the quote is relevant, in context, and complete.
  • And even better, cite a number of sources to show that the opinion is representative. Rather we get single, partial, and often outdated quotes without context.
  • (nature is not, it turns out, cleanly divided into “kinds”, which have no operational definition). He also repeats this canard: Such variation is often called microevolution, and these minor horizontal (or downward) changes occur fairly often, but such changes are not true “vertical” evolution. This is the microevolution/macroevolution false dichotomy. It is only “often called” this by creationists – not by actual evolutionary scientists. There is no theoretical or empirical division between macro and micro evolution. There is just evolution, which can result in the full spectrum of change from minor tweaks to major changes.
  • Morris wonders why there are no “dats” – dog-cat transitional species. He misses the hierarchical nature of evolution. As evolution proceeds, and creatures develop a greater and greater evolutionary history behind them, they increasingly are committed to their body plan. This results in a nestled hierarchy of groups – which is reflected in taxonomy (the naming scheme of living things).
  • once our distant ancestors developed the basic body plan of chordates, they were committed to that body plan. Subsequent evolution resulted in variations on that plan, each of which then developed further variations, etc. But evolution cannot go backward, undo evolutionary changes and then proceed down a different path. Once an evolutionary line has developed into a dog, evolution can produce variations on the dog, but it cannot go backwards and produce a cat.
  • Stephen J. Gould described this distinction as the difference between disparity and diversity. Disparity (the degree of morphological difference) actually decreases over evolutionary time, as lineages go extinct and the surviving lineages are committed to fewer and fewer basic body plans. Meanwhile, diversity (the number of variations on a body plan) within groups tends to increase over time.
  • the kind of evolutionary changes that were happening in the past, when species were relatively undifferentiated (compared to contemporary species) is indeed not happening today. Modern multi-cellular life has 600 million years of evolutionary history constraining their future evolution – which was not true of species at the base of the evolutionary tree. But modern species are indeed still evolving.
  • Here is a list of research documenting observed instances of speciation. The list is from 1995, and there are more recent examples to add to the list. Here are some more. And here is a good list with references of more recent cases.
  • Next Morris tries to convince the reader that there is no evidence for evolution in the past, focusing on the fossil record. He repeats the false claim (again, which I already dealt with) that there are no transitional fossils: Even those who believe in rapid evolution recognize that a considerable number of generations would be required for one distinct “kind” to evolve into another more complex kind. There ought, therefore, to be a considerable number of true transitional structures preserved in the fossils — after all, there are billions of non-transitional structures there! But (with the exception of a few very doubtful creatures such as the controversial feathered dinosaurs and the alleged walking whales), they are not there.
  • I deal with this question at length here, pointing out that there are numerous transitional fossils for the evolution of terrestrial vertebrates, mammals, whales, birds, turtles, and yes – humans from ape ancestors. There are many more examples, these are just some of my favorites.
  • Much of what follows (as you can see it takes far more space to correct the lies and distortions of Morris than it did to create them) is classic denialism – misinterpreting the state of the science, and confusing lack of information about the details of evolution with lack of confidence in the fact of evolution. Here are some examples – he quotes Niles Eldridge: “It is a simple ineluctable truth that virtually all members of a biota remain basically stable, with minor fluctuations, throughout their durations. . . .“ So how do evolutionists arrive at their evolutionary trees from fossils of organisms which didn’t change during their durations? Beware the “….” – that means that meaningful parts of the quote are being omitted. I happen to have the book (The Pattern of Evolution) from which Morris mined that particular quote. Here’s the rest of it: (Remember, by “biota” we mean the commonly preserved plants and animals of a particular geological interval, which occupy regions often as large as Roger Tory Peterson’s “eastern” region of North American birds.) And when these systems change – when the older species disappear, and new ones take their place – the change happens relatively abruptly and in lockstep fashion.”
  • Eldridge was one of the authors (with Gould) of punctuated equilibrium theory. This states that, if you look at the fossil record, what we see are species emerging, persisting with little change for a while, and then disappearing from the fossil record. They theorize that most species most of the time are at equilibrium with their environment, and so do not change much. But these periods of equilibrium are punctuated by disequilibrium – periods of change when species will have to migrate, evolve, or go extinct.
  • This does not mean that speciation does not take place. And if you look at the fossil record we see a pattern of descendant species emerging from ancestor species over time – in a nice evolutionary pattern. Morris gives a complete misrepresentation of Eldridge’s point – once again we see intellectual dishonesty in his methods of an astounding degree.
  • Regarding the atheism = religion comment, it reminds me of a great analogy that I first heard on twitter from Evil Eye. (paraphrase) “those that say atheism is a religion, is like saying ‘not collecting stamps’ is a hobby too.”
  • Morris next tackles the genetic evidence, writing: More often is the argument used that similar DNA structures in two different organisms proves common evolutionary ancestry. Neither argument is valid. There is no reason whatever why the Creator could not or would not use the same type of genetic code based on DNA for all His created life forms. This is evidence for intelligent design and creation, not evolution.
  • Here is an excellent summary of the multiple lines of molecular evidence for evolution. Basically, if we look at the sequence of DNA, the variations in trinucleotide codes for amino acids, and amino acids for proteins, and transposons within DNA we see a pattern that can only be explained by evolution (or a mischievous god who chose, for some reason, to make life look exactly as if it had evolved – a non-falsifiable notion).
  • The genetic code is essentially comprised of four letters (ACGT for DNA), and every triplet of three letters equates to a specific amino acid. There are 64 (4^3) possible three letter combinations, and 20 amino acids. A few combinations are used for housekeeping, like a code to indicate where a gene stops, but the rest code for amino acids. There are more combinations than amino acids, so most amino acids are coded for by multiple combinations. This means that a mutation that results in a one-letter change might alter from one code for a particular amino acid to another code for the same amino acid. This is called a silent mutation because it does not result in any change in the resulting protein.
  • It also means that there are very many possible codes for any individual protein. The question is – which codes out of the gazillions of possible codes do we find for each type of protein in different species. If each “kind” were created separately there would not need to be any relationship. Each kind could have it’s own variation, or they could all be identical if they were essentially copied (plus any mutations accruing since creation, which would be minimal). But if life evolved then we would expect that the exact sequence of DNA code would be similar in related species, but progressively different (through silent mutations) over evolutionary time.
  • This is precisely what we find – in every protein we have examined. This pattern is necessary if evolution were true. It cannot be explained by random chance (the probability is absurdly tiny – essentially zero). And it makes no sense from a creationist perspective. This same pattern (a branching hierarchy) emerges when we look at amino acid substitutions in proteins and other aspects of the genetic code.
  • Morris goes for the second law of thermodynamics again – in the exact way that I already addressed. He responds to scientists correctly pointing out that the Earth is an open system, by writing: This naive response to the entropy law is typical of evolutionary dissimulation. While it is true that local order can increase in an open system if certain conditions are met, the fact is that evolution does not meet those conditions. Simply saying that the earth is open to the energy from the sun says nothing about how that raw solar heat is converted into increased complexity in any system, open or closed. The fact is that the best known and most fundamental equation of thermodynamics says that the influx of heat into an open system will increase the entropy of that system, not decrease it. All known cases of decreased entropy (or increased organization) in open systems involve a guiding program of some sort and one or more energy conversion mechanisms.
  • Energy has to be transformed into a usable form in order to do the work necessary to decrease entropy. That’s right. That work is done by life. Plants take solar energy (again – I’m not sure what “raw solar heat” means) and convert it into food. That food fuels the processes of life, which include development and reproduction. Evolution emerges from those processes- therefore the conditions that Morris speaks of are met.
  • But Morris next makes a very confused argument: Evolution has neither of these. Mutations are not “organizing” mechanisms, but disorganizing (in accord with the second law). They are commonly harmful, sometimes neutral, but never beneficial (at least as far as observed mutations are concerned). Natural selection cannot generate order, but can only “sieve out” the disorganizing mutations presented to it, thereby conserving the existing order, but never generating new order.
  • The notion that evolution (as if it’s a thing) needs to use energy is hopelessly confused. Evolution is a process that emerges from the system of life – and life certainly can use solar energy to decrease its entropy, and by extension the entropy of the biosphere. Morris slips into what is often presented as an information argument.  (Yet again – already dealt with. The pattern here is that we are seeing a shuffling around of the same tired creationists arguments.) It is first not true that most mutations are harmful. Many are silent, and many of those that are not silent are not harmful. They may be neutral, they may be a mixed blessing, and their relative benefit vs harm is likely to be situational. They may be fatal. And they also may be simply beneficial.
  • Morris finishes with a long rambling argument that evolution is religion. Evolution is promoted by its practitioners as more than mere science. Evolution is promulgated as an ideology, a secular religion — a full-fledged alternative to Christianity, with meaning and morality . . . . Evolution is a religion. This was true of evolution in the beginning, and it is true of evolution still today. Morris ties evolution to atheism, which, he argues, makes it a religion. This assumes, of course, that atheism is a religion. That depends on how you define atheism and how you define religion – but it is mostly wrong. Atheism is a lack of belief in one particular supernatural claim – that does not qualify it as a religion.
  • But mutations are not “disorganizing” – that does not even make sense. It seems to be based on a purely creationist notion that species are in some privileged perfect state, and any mutation can only take them farther from that perfection. For those who actually understand biology, life is a kluge of compromises and variation. Mutations are mostly lateral moves from one chaotic state to another. They are not directional. But they do provide raw material, variation, for natural selection. Natural selection cannot generate variation, but it can select among that variation to provide differential survival. This is an old game played by creationists – mutations are not selective, and natural selection is not creative (does not increase variation). These are true but irrelevant, because mutations increase variation and information, and selection is a creative force that results in the differential survival of better adapted variation.
  •  
    One of my earlier posts on SkepticBlog was Ten Major Flaws in Evolution: A Refutation, published two years ago. Occasionally a creationist shows up to snipe at the post, like this one:i read this and found it funny. It supposedly gives a scientific refutation, but it is full of more bias than fox news, and a lot of emotion as well.here's a scientific case by an actual scientists, you know, one with a ph. D, and he uses statements by some of your favorite evolutionary scientists to insist evolution doesn't exist.i challenge you to write a refutation on this one.http://www.icr.org/home/resources/resources_tracts_scientificcaseagainstevolution/Challenge accepted.
Weiye Loh

Don't dumb me down | Science | The Guardian - 0 views

  • Science stories usually fall into three families: wacky stories, scare stories and "breakthrough" stories.
  • these stories are invariably written by the science correspondents, and hotly followed, to universal jubilation, with comment pieces, by humanities graduates, on how bonkers and irrelevant scientists are.
  • A close relative of the wacky story is the paradoxical health story. Every Christmas and Easter, regular as clockwork, you can read that chocolate is good for you (www.badscience.net/?p=67), just like red wine is, and with the same monotonous regularity
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  • At the other end of the spectrum, scare stories are - of course - a stalwart of media science. Based on minimal evidence and expanded with poor understanding of its significance, they help perform the most crucial function for the media, which is selling you, the reader, to their advertisers. The MMR disaster was a fantasy entirely of the media's making (www.badscience.net/?p=23), which failed to go away. In fact the Daily Mail is still publishing hysterical anti-immunisation stories, including one calling the pneumococcus vaccine a "triple jab", presumably because they misunderstood that the meningitis, pneumonia, and septicaemia it protects against are all caused by the same pneumococcus bacteria (www.badscience.net/?p=118).
  • people periodically come up to me and say, isn't it funny how that Wakefield MMR paper turned out to be Bad Science after all? And I say: no. The paper always was and still remains a perfectly good small case series report, but it was systematically misrepresented as being more than that, by media that are incapable of interpreting and reporting scientific data.
  • Once journalists get their teeth into what they think is a scare story, trivial increases in risk are presented, often out of context, but always using one single way of expressing risk, the "relative risk increase", that makes the danger appear disproportionately large (www.badscience.net/?p=8).
  • he media obsession with "new breakthroughs": a more subtly destructive category of science story. It's quite understandable that newspapers should feel it's their job to write about new stuff. But in the aggregate, these stories sell the idea that science, and indeed the whole empirical world view, is only about tenuous, new, hotly-contested data
  • Articles about robustly-supported emerging themes and ideas would be more stimulating, of course, than most single experimental results, and these themes are, most people would agree, the real developments in science. But they emerge over months and several bits of evidence, not single rejiggable press releases. Often, a front page science story will emerge from a press release alone, and the formal academic paper may never appear, or appear much later, and then not even show what the press reports claimed it would (www.badscience.net/?p=159).
  • there was an interesting essay in the journal PLoS Medicine, about how most brand new research findings will turn out to be false (www.tinyurl.com/ceq33). It predictably generated a small flurry of ecstatic pieces from humanities graduates in the media, along the lines of science is made-up, self-aggrandising, hegemony-maintaining, transient fad nonsense; and this is the perfect example of the parody hypothesis that we'll see later. Scientists know how to read a paper. That's what they do for a living: read papers, pick them apart, pull out what's good and bad.
  • Scientists never said that tenuous small new findings were important headline news - journalists did.
  • there is no useful information in most science stories. A piece in the Independent on Sunday from January 11 2004 suggested that mail-order Viagra is a rip-off because it does not contain the "correct form" of the drug. I don't use the stuff, but there were 1,147 words in that piece. Just tell me: was it a different salt, a different preparation, a different isomer, a related molecule, a completely different drug? No idea. No room for that one bit of information.
  • Remember all those stories about the danger of mobile phones? I was on holiday at the time, and not looking things up obsessively on PubMed; but off in the sunshine I must have read 15 newspaper articles on the subject. Not one told me what the experiment flagging up the danger was. What was the exposure, the measured outcome, was it human or animal data? Figures? Anything? Nothing. I've never bothered to look it up for myself, and so I'm still as much in the dark as you.
  • Because papers think you won't understand the "science bit", all stories involving science must be dumbed down, leaving pieces without enough content to stimulate the only people who are actually going to read them - that is, the people who know a bit about science.
  • Compare this with the book review section, in any newspaper. The more obscure references to Russian novelists and French philosophers you can bang in, the better writer everyone thinks you are. Nobody dumbs down the finance pages.
  • Statistics are what causes the most fear for reporters, and so they are usually just edited out, with interesting consequences. Because science isn't about something being true or not true: that's a humanities graduate parody. It's about the error bar, statistical significance, it's about how reliable and valid the experiment was, it's about coming to a verdict, about a hypothesis, on the back of lots of bits of evidence.
  • science journalists somehow don't understand the difference between the evidence and the hypothesis. The Times's health editor Nigel Hawkes recently covered an experiment which showed that having younger siblings was associated with a lower incidence of multiple sclerosis. MS is caused by the immune system turning on the body. "This is more likely to happen if a child at a key stage of development is not exposed to infections from younger siblings, says the study." That's what Hawkes said. Wrong! That's the "Hygiene Hypothesis", that's not what the study showed: the study just found that having younger siblings seemed to be somewhat protective against MS: it didn't say, couldn't say, what the mechanism was, like whether it happened through greater exposure to infections. He confused evidence with hypothesis (www.badscience.net/?p=112), and he is a "science communicator".
  • how do the media work around their inability to deliver scientific evidence? They use authority figures, the very antithesis of what science is about, as if they were priests, or politicians, or parent figures. "Scientists today said ... scientists revealed ... scientists warned." And if they want balance, you'll get two scientists disagreeing, although with no explanation of why (an approach at its most dangerous with the myth that scientists were "divided" over the safety of MMR). One scientist will "reveal" something, and then another will "challenge" it
  • The danger of authority figure coverage, in the absence of real evidence, is that it leaves the field wide open for questionable authority figures to waltz in. Gillian McKeith, Andrew Wakefield, Kevin Warwick and the rest can all get a whole lot further, in an environment where their authority is taken as read, because their reasoning and evidence is rarely publicly examined.
  • it also reinforces the humanities graduate journalists' parody of science, for which we now have all the ingredients: science is about groundless, incomprehensible, didactic truth statements from scientists, who themselves are socially powerful, arbitrary, unelected authority figures. They are detached from reality: they do work that is either wacky, or dangerous, but either way, everything in science is tenuous, contradictory and, most ridiculously, "hard to understand".
  • This misrepresentation of science is a direct descendant of the reaction, in the Romantic movement, against the birth of science and empiricism more than 200 years ago; it's exactly the same paranoid fantasy as Mary Shelley's Frankenstein, only not as well written. We say descendant, but of course, the humanities haven't really moved forward at all, except to invent cultural relativism, which exists largely as a pooh-pooh reaction against science. And humanities graduates in the media, who suspect themselves to be intellectuals, desperately need to reinforce the idea that science is nonsense: because they've denied themselves access to the most significant developments in the history of western thought for 200 years, and secretly, deep down, they're angry with themselves over that.
  • had a good spirited row with an eminent science journalist, who kept telling me that scientists needed to face up to the fact that they had to get better at communicating to a lay audience. She is a humanities graduate. "Since you describe yourself as a science communicator," I would invariably say, to the sound of derisory laughter: "isn't that your job?" But no, for there is a popular and grand idea about, that scientific ignorance is a useful tool: if even they can understand it, they think to themselves, the reader will. What kind of a communicator does that make you?
  • Science is done by scientists, who write it up. Then a press release is written by a non-scientist, who runs it by their non-scientist boss, who then sends it to journalists without a science education who try to convey difficult new ideas to an audience of either lay people, or more likely - since they'll be the ones interested in reading the stuff - people who know their way around a t-test a lot better than any of these intermediaries. Finally, it's edited by a whole team of people who don't understand it. You can be sure that at least one person in any given "science communication" chain is just juggling words about on a page, without having the first clue what they mean, pretending they've got a proper job, their pens all lined up neatly on the desk.
Weiye Loh

Roger Pielke Jr.'s Blog: Wanted: Less Spin, More Informed Debate - 0 views

  • , the rejection of proposals that suggest starting with a low carbon price is thus a pretty good guarantee against any carbon pricing at all.  It is rather remarkable to see advocates for climate action arguing against a policy that recommends implementing a carbon price, simply because it does not start high enough for their tastes.  For some, idealism trumps pragmatism, even if it means no action at all.
  • Ward writes: . . . climate change is the result of a number of market failures, the largest of which arises from the fact that the prices of products and services involving emissions of greenhouse gases do not reflect the true costs of the damage caused through impacts on the climate. . . All serious economic analyses of how to tackle climate change identify the need to correct this market failure through a carbon price, which can be implemented, for instance, through cap and trade schemes or carbon taxes. . . A carbon price can be usefully supplemented by improvements in innovation policies, but it needs to be at the core of action on climate change, as this paper by Carolyn Fischer and Richard Newell points out.
  • First, the criticism is off target. A low and rising carbon price is in fact a central element to the policy recommendations advanced by the Hartwell Group in Climate Pragmatism, the Hartwell Paper, and as well, in my book The Climate Fix.  In Climate Pragmatism, we approvingly cite Japan's low-but-rising fossil fuels tax and discuss a range of possible fees or taxes on fossil fuels, implemented, not to penalize energy use or price fossil fuels out of the market, but rather to ensure that as we benefit from today’s energy resources we are setting aside the funds necessary to accelerate energy innovation and secure the nation’s energy future.
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  • Here is another debating lesson -- before engaging in public not only should one read the materials that they are critiquing, they should also read the materials that they cite in support of their own arguments. This is not the first time that Bob Ward has put out misleading information related to my work.  Ever since we debated in public at the Royal Institution, Bob has adopted guerrilla tactics, lobbing nonsense into the public arena and then hiding when challenged to support or defend his views.  As readers here know, I am all for open and respectful debate over these important topics.  Why is that instead, all we get is poorly informed misdirection and spin? Despite the attempts at spin, I'd welcome Bob's informed engagement on this topic. Perhaps he might start by explaining which of the 10 statements that I put up on the mathematics and logic underlying climate pragmatism is incorrect.
  • In comments to another blog, I've identified Bob as a PR flack. I see no reason to change that assessment. In fact, his actions only confirm it. Where does he fit into a scientific debate?
  • Thanks for the comment, but I'll take the other side ;-)First, this is a policy debate that involves various scientific, economic, political analyses coupled with various values commitments including monied interests -- and as such, PR guys are as welcome as anyone else.That said, the problem here is not that Ward is a PR guy, but that he is trying to make his case via spin and misrepresentation. That gets noticed pretty quickly by anyone paying attention and is easily shot down.
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