Although purposefully-deceptive design is more likely to occur on for-profit sites, I thought this was an interesting article about the subtle ways design can hamper usability.
Interestingly, Scribd.com got called out for Baiting and Switching on a grassroots wiki that documents dark patterns: http://wiki.darkpatterns.org/Bait_and_Switch
Hydra is a multi-institutional collaboration to build a common, open source framework for multi-function, multi-purpose, repository-powered applications.
This list isn't necessarily up to date-for instance Smartsheet isn't listed but the ISO has already approved it-but it may be a place for us to keep an eye on in the future as we attempt to not reinvent the wheel/do original research when it comes to potential tools we could use