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ScienceDaily (May 9, 2011) - Mayo Clinic researchers have designed a new tool for identifying protein function from genetic code. A team led by Stephen Ekker, Ph.D., succeeded in switching individual genes off and on in zebrafish, then observing embryonic and juvenile development. The study appears in the journal Nature Methods.

Calico , ETH Zurich "One in particular, the bcat-1 gene, seemed to have disproportionate effect on aging. "When we blocked the effect of this gene, it significantly extended the mean lifespan of the nematode by up to 25 percent," explains Professor Michael Ristow, coordinating author of the recently published study and Professor of Energy Metabolism at ETH Zurich."

"Wie steuern Gene das Verhalten? Anne von Philipsborn vom Forschungsinstitut für molekulare Pathologie in Wien hat erstmals den Weg vom Gen zur Nervenzelle und von der Nervenzelle zum Verhalten nachvollziehen können - anhand des Balzverhaltens der Fliegenmännchen."

"Individuals who are homozygous for the G allele of the rs53576 SNP of the oxytocin receptor (OXTR) gene tend to be more prosocial than carriers of the A allele. However, little is known about how these differences manifest behaviorally and whether they are readily detectable by outside observers, both critical questions in theoretical accounts of prosociality. In the present study, we used thin-slicing methodology to test the hypotheses that (i) individual differences in rs53576 genotype predict how prosocial observers judge target individuals to be on the basis of brief observations of behavior, and (ii) that variation in targets' nonverbal displays of affiliative cues would account for these judgment differences. In line with predictions, we found that individuals homozygous for the G allele were judged to be more prosocial than carriers of the A allele. These differences were completely accounted for by variations in the expression of affiliative cues. Thus, individual differences in rs53576 are associated with behavioral manifestations of prosociality, which ultimately guide the judgments others make about the individual. "

""Most interestingly, the changes were observed in genes that are the current targets of anti-inflammatory and analgesic drugs," says Perla Kaliman"

Researchers have cracked the long-time mystery of how sex is determined in birds: A dose-dependent effect of a single gene on one of the sex chromosomes does the trick, according to a study published this week in Nature.

The goal of curing diseases like Parkinson's using cells generated from a patient's own body has come a step closer. Researchers have successfully reprogrammed human nerve cells back to an embryo-like state using just one gene.

UCSC Genome Bioinformatics Genocoding Project Genomic Text Indexing: Scanning papers for genomic identifiers and mapping them to the human genome. We currently recognize DNA and protein sequences, SNPs, bands and gene symbols.

"Males and females differ in their biobehavioural response to stress, where males exhibit a heightened sympathetic response to stress compared with females. Specifically, Taylor et al. 1 propose that the classic "fight-or-flight" response to stress is adaptive for males, whilst females engage in a so-called "tend-and-befriend" response to stress. We propose that the Y-chromosome gene, SRY (sex-determining region on the Y chromosome), provides a genetic basis for the heightened sympathetic reactivity to stress and thus predominance of "fight-flight" response in males. Our idea is based on studies that demonstrate (i) the presence of SRY in brain regions and peripheral tissues abundant in catecholamines, (ii) the regulation of catecholamine synthesis and breakdown by SRY, and (iii) the role of SRY in voluntary movement and blood pressure in males"

Come work with us Interested in working with researchers from different disciplines within the Harvard, MIT and Broad community and an unique opportunity to participate in world-class research to make an impact on human health? Come work with us! We are looking for a computational biologists to handle data from a wide variety of experimental methods, focusing on next-gen sequencing technologies. Keep Reading...  SCDE is live The Stem Cell Discovery Engine (SCDE) is an integrated platform that allows users to consistently describe, share and compare cancer and tissue stem cell data. It is made up of an online database of curated experiments coupled to a customized instance of the Galaxy analysis engine with tools for gene list manipulation and molecular profile comparisons. The SCDE currently contains more than 50 stem cell-related experiments. Each has been manually curated and encoded using the ISA-Tab standard to ensure the quality of the data and its annotation. Keep Reading...  The Center for Health Bioinformatics at the Harvard School of Public Health provides consults to researchers for the management, integration and contextual analysis of biological high-throughput data. We are a member of the Center for Stem Cell Bioinformatics, the Environmental Statistics and Bioinformatics Core at the Harvard NIEHS Center for Environmental Health and the Genetics & Bioinformatics Consulting group for Harvard Catalyst and work closely with our colleagues in the Department of Biostatistics and the Program in Quantitative Genomics to act as a single point of contact for computational biology,

The Encyclopedia of DNA Elements (ENCODE) Consortium is an international collaboration of research groups funded by the National Human Genome Research Institute (NHGRI). The goal of ENCODE is to build a comprehensive parts list of functional elements in the human genome, including elements that act at the protein and RNA levels, and regulatory elements that control cells and circumstances in which a gene is active.

William Gunn The Top 10 papers in Biological Sciences by Mendeley readership. With the Mendeley for Life Scientists webinar coming up on Thursday, I thought I would take a look at the readership stats for Biological Sciences. Biological Sciences has long been our biggest discipline, and having done my doctoral work in the Life Sciences, I knew this would be interesting. Overall, researchers in bioinformatics contributed most strongly to the most read papers, along with the older disciplines of micro- and molecular biology. Regardless of discipline, however, it's clear that the days of toiling away in isolation to thoroughly study one gene are over. Today, it's all about huge consortia and massive data. Here's what I found

Wie Menschen im Online-Portal Facebook, so geben freischwimmende Bakterien ihr Einzelgänger-Dasein zu Gunsten einer Matrix-Community auf. Über spezielle Botenstoffe schalten die Bakterien gegenseitig Gene an und ab und bilden schließlich eine multizellulä

"Bacterial signaling controlling biofilm formation and pathogenicity Opportunistic bacterial pathogens cause a variety of infectious diseases. Their ability to sense and respond to different microenvironments, particularly during the transition from a free-living to an indwelling pathogenic lifestyle, is largely dependent on a variety of adaptational strategies (Hall-Stoodley et al., 2004). Examples include phenotypic variation, biofilm formation, resistance to antibiotic treatments and virulence gene expression, suggested to be interlinked phenotypes largely dependent on bacterial signaling and changes in their transcription profiles "

"I am going to try and experiment within an experiment today. I cloned a couple genes from yeast and have been spending months now trying to get them into several vectors for my combinatorial overexpression project. However, as it goes with wet messy biology, this seemingly simple process has been fighting me tooth and nail. I have retrieved one good clone out of 56 minipreps (plasmid construct isolation) and tried several ligations. So I have tripled down this week. In the picture here, I have 32 tubes, each with 5 individual E. coli colonies. That is a grand total of 160 isolates. 1.5 mL of cells have been transferred from overnight cultures and I am about to spin, lyse, and retrieve."

Some argue that these genes bring benefits - mental illness and genius have a long-standing link - but archaeologist Penny Spikins at the University of York, UK, goes further. She believes that mental illness and conditions such as autism persist at such high levels because in the past they were advantageous to humanity. "I think that part of the reason Homo sapiens were so successful is because they were willing to include people with different minds in their society - people with autism or schizophrenia, for example."

"Since cancers have individual clonal karyotypes, are immortal and evolve from normal cells treated by carcinogens only after exceedingly long latencies of many months to decades-we deduce that carcinogenesis may be a form of speciation. This theory proposes that carcinogens initiate carcinogenesis by causing aneuploidy, i.e., losses or gains of chromosomes. Aneuploidy destabilizes the karyotype, because it unbalances thousands of collaborating genes including those that synthesize, segregate and repair chromosomes. Driven by this inherent instability aneuploid cells evolve ever-more random karyotypes automatically. Most of these perish, but a very small minority acquires reproductive autonomy-the primary characteristic of cancer cells and species"

"For this study, the investigators bred mice lacking TRPV4 or administered a drug to deactivate it. In the absence of TRPV4, white cells turned on a set of genes that consume energy to produce heat, rather than storing the energy as excess fat. This "thermogenic" process normally occurs in brown or beige fat (commonly called "good fat"), which is found mostly in small animals and human infants to protect against cold. When the TRPV4-deficient mice were put on a high-calorie diet for several weeks, they did not become obese, and their level of fat cell inflammation and insulin resistance was lowered. "We have identified a target that, when inhibited, can activate beige adipose tissue and suppress inflammation," said Spiegelman."

"And again, in this expanded group, she found the same association between the variation of the DRD4 gene and a willingness to take risks on the slopes. The variant's overall effect was slight, explaining only about 3 percent of the difference in behavior between risk takers and the risk averse, but was statistically significant and remained intact"

Results from a DNA study of a young boy's skeletal remains believed to be 24,000 years old could turn the archaeological world upside down -- it's been demonstrated that nearly 30 percent of modern Native American's ancestry came from this youngster's gene pool, suggesting First Americans came directly from Siberia, according to a research team that includes a Texas A&M University professor.