Group items tagged

This is the homepage for an ongoing research and development project named PATIKA - Pathway Analysis Tools for Integration and Knowledge Acquisition. Within this project so far, among others, an ontology has been defined; a pathway database (which integrates and interfaces with several public pathway databases) has been constructed; and some software tools have been developed for effective integration, querying, analysis, and manipulation of pathway data.

The MOBY system for interoperability between biological data hosts and analytical services The MOBY-S system defines an ontology-based messaging standard through which a client will be able to automatically discover and interact with task-appropriate biological data and analytical service providers, without requiring manual manipulation of data formats as data flows from one provider to the next.

MOAT (Meaning Of A Tag) provides a Semantic Web framework to publish semantically-annotated content from free-tagging. While tags are widely used in Web 2.0 services, their lack of machine-understandable meaning can be a problem for information retrieval, especially when people use tags that can have different meanings depending on the context. MOAT aims to solve this by providing a way for users to define meaning(s) of their tag(s) using URIs of Semantic Web resources (such as URIs from dbpedia, geonames … or any knowledge base), and then annotate content with those URIs rather than free-text tags, leveraging content into Semantic Web, by linking data together. Moreover, tag meanings can be shared between people, providing an architecture of participation to define and exchange potential meanings of tags within a community of users. To achieve this goal, MOAT relies on an architecture that can be deployed for any organisation or community and that involves a lightweight ontology, a MOAT server, and some third-party clients .

SWOOP is a tool for creating, editing, and debugging OWL ontologies. It was produced by the MIND lab at University of Maryland, College Park, but is now an open source project with contributers from all over.

Functional Requirements for Sharing Tag Data The TagCommons effort is operating something like a software project. The process is very lightweight, but has an important step that is often forgotten in discussions about ontologies and formats: for what purposes are we designing this? These days, a good way to look at functional requirements for software is to identify use cases and then derive engineering requirements. This was the first outcome of the working group, and the results are summarized here. We will describe the use cases first and then the requirements.

Welcome to OmegaWiki. This project is many things to many people. The initial aim is to provide information on all words of all languages. As a consequence of the origin of OmegaWiki, it includes both lexical, terminological and ontological information. Our data is available in a relational database, as a result it is possible to use the data for many purposes.

AKTive Media is an ontology based cross-media annotation (Images and Text) system. Our goal is to automate the process of annotation by suggesting knowledge to the user in an interactive way while the user is annotating and hence minimizing user effort. The system actively works in the background, interacting with web services and queries our central annotational store to look for context specific knowledge.

Graphical ontology editor, plugin for protege

SemanticWiki -- a virtual mini-series jointly organized by FZI Karlsruhe, Mayo Clinic, Ontolog, RPI Tetherless World Constellation and Salzburg Research, Austria

OWL 2 extends the W3C OWL Web Ontology Language with a small but useful set of features that have been requested by users, for which effective reasoning algorithms are now available, and that OWL tool developers are willing to support. The new features include extra syntactic sugar, additional property and qualified cardinality constructors, extended datatype support, simple metamodeling, and extended annotations.

The EU IST integrated project Semantic Knowledge Technologies (SEKT) developed and exploited semantic knowledge technologies. Core to the SEKT project has been the creation of synergies by combining the three core research areas ontology management, machine learning and natural language processing.

SCRIBO - Semi-automatic and Collaborative Retrieval of Information Based on Ontologies - aims at algorithms and collaborative free software for the automatic extraction of knowledge from texts and images, and for the semi-automatic annotation of digital documents.

The Biomedical Grid Terminology (BiomedGT) is an open, collaboratively developed terminology for translational research. BiomedGT builds on the strengths of the NCI Thesaurus, including concept orientation, description logic, and public accessibility. While the current terminology has been seeded with NCI Thesaurus content, it is being restructured to facilitate open content development. The goal is to evolve BiomedGT into a set of federated sub-terminologies, with content maintained by experts in the relevant research communities.

A Semantic Map is kind of like a dictionary, in that it's a representation of Cognition's ability to define things. Cognition claims that its Semantic Map has over 10 million semantic connections; over 4 million semantic contexts (word meanings that create contexts for specific meanings of other related words); over 536,000 word senses (word and phrase meanings); 75,000 concept classes (or synonym classes of word meanings); 7,500 nodes in the technology's ontology or classification scheme; and 506,000 word stems (roots of words) for the English language.

CoW is a "Controllable Wiki" and CMS that supports collaborative document creation with asynchonous off-line editing. CoW is desiged to make it easy to add interaction to static websites, and to support concurrent editing and off-line working with straightforward synchronisation (using Subversion). The system also serves as a test-bed for experiments in controlled languages for round-trip ontology engineering (from the GATE project: http://gate.ac.uk/).

NKOS is devoted to the discussion of the functional and data model for enabling knowledge organization systems (KOS), such as classification systems, thesauri, gazetteers, and ontologies, as networked interactive information services to support the description and retrieval of diverse information resources through the Internet.

SWAML, pronounced [swæml], is a research project around the semantic web technologies to publish the mailing lists' archives into a RDF format. It has been developed by the CTIC Foundation and the WESO-RG at University of Oviedo (Spain). You can visit the project page at BerliOS for more details. SWAML process description SWAML reads a collection of email messages stored in a mailbox (from a mailing list compatible with RFC 4155) and generates a RDF description. It is written in Python using SIOC as the main ontology to represent in RDF a mailing list.

Upper Mapping and Binding Exchange Layer A lightweight, subject concept reference structure for the Web

Multi-ontology sense making a new simplicity in decision making