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"Description\n\nOligonucleotide design program for use with ABI PRISM® 7900HT and 7000 Sequence Detection Systems "

Used by ABI BioScope Apache ActiveMQ is an open source (Apache 2.0 licensed) message broker which fully implements the Java Message Service 1.1 (JMS). It provides "Enterprise Features"[1] like clustering, multiple message stores, and ability to use any database as a JMS persistence provider besides VM, cache, and journal persistency.

Maq is a software that builds mapping assemblies from short reads generated by the next-generation sequencing machines. It is particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has preliminary functions to handle ABI SOLiD data.\n\nMaq first aligns reads to reference sequences and then calls the consensus. At the mapping stage, maq performs ungapped alignment. For single-end reads, maq is able to find all hits with up to 2 or 3 mismatches, depending on a command-line option; for paired-end reads, it always finds all paired hits with one of the two reads containing up to 1 mismatch. At the assembling stage, maq calls the consensus based on a statistical model. It calls the base which maximizes the posterior probability and calculates a phred quality at each position along the consensus. Heterozygotes are also called in this process.