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Are you getting an error message. If so, something in your profile is probably off. If you've used H.264 @ 768 kpbs, either change to profile to something else or use DaProphecy's workaround below.

AviSynth is a powerful tool for video post-production. It provides almost unlimited ways of editing and processing videos. AviSynth works as a frameserver, providing instant editing without the need for temporary files. AviSynth itself does not provide a graphical user interface (GUI) but instead relies on a script system that allows advanced non-linear editing. While this may at first seem tedious and unintuitive, it is remarkably powerful and is a very good way to manage projects in a precise, consistent, and reproducible manner. Because text-based scripts are human readable, projects are inherently self-documenting. The scripting language is simple yet powerful, and complex filters can be created from basic operations to develop a sophisticated palette of useful and unique effects.

Thanks to msopent for a detailed set of MOV-conversion instructions. There are example scripts for MOV files here. You will need the QTReader plugin.