Marzouki was the first foreign leader to address the French assembly since 2006, as part of a three-day visit aimed at rebuilding Tunisia's ties with its former colonial master.
Relations were strained by France's slow and confused response to the popular revolt, but in his speech Marzouki nonetheless expressed "gratitude" to France.
"A fraction of official France supported the dictatorship," he said. "But the majority, the essential part of France... supported us as much as it could and accompanied us as far as possible until the tyrant fell," he said