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dhtobey Tobey

International Institute for the Advancement of Medicine. - 0 views

www.iiam.org

research.institute prospect tissue

shared by dhtobey Tobey on 21 Apr 10 - Cached
  • IIAM one of the largest recovery and placement networks in the world that provides a link between humanity and medical discovery - honoring the wishes of donors and their families wanting to contribute to medical research and education. IIAM provides researchers with the human tissues needed to find cures for disease, improve treatments and techniques, and develop drugs.
  • dhtobey Tobey on 21 Apr 10
     
    Potential partner or customer
dhtobey Tobey

Byte Size Biology » genomics - 1 views

bytesizebio.net/...genomics

genomics standard GSC software methodology community-desktop prospect association research non-profit

shared by dhtobey Tobey on 02 May 10 - Cached
  • etadata is the “data about the data”: all the habitat data, SOPs and abiotic data that is in dire need of the standardization Kyrpides writes about.
  • Metadata is the “data about the data”: all the habitat data, SOPs and abiotic data that is in dire need of the standardization Kyrpides writes about.
  • In 2005 the Genomics Standards Consortium was formed to address this problem. Renzo Kottman from the Max-Planck Institute for Marine Microbiology in Bremen, Germany  talked about software development within the GSC, and specifically about his own project: the Genomic Contextual Data Markup Language, or GCDML. GCDML is an XML-based standard for describing everything associated with a genomic or a metagenomic sample: where it was taken from , under what conditions, which protocols were used to extract, sequence, assemble, finish and analyze the metagenome.
    • dhtobey Tobey
      dhtobey Tobey on 02 May 10
       
      Standards organizations are community desktops waiting to happen. More specifically, not reference to "protocols" with a five step process similar to our technology transfer framework. If we could get a copy of this protocol we could develop a diagram and a community site around the four "research cycle" stages: extract, sequence, assemble, finish and analyze. What we need is a similar structure for the tissue sourcing process. Scott, can you think of who might have such a protocol documented?
  • dhtobey Tobey on 02 May 10
     
    Excerpt from further down the article that Steve sent via email. Note the embedded presentation on "Software development by the Genomics Standards Consortium."
  • Steve King on 02 May 10
     
    wow.. this page is a tour de force for bio science info issues ... and I very much like where you are going with the extract, sequence, assemble, finish and analyze.. pattern.. similar to the NIST model we are using at NERC.... hopefully
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