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John Moore

Without enzyme, biological reaction essential to life takes 2.3 billion years | Eureka!... - 0 views

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    Describes the enzyme-catalyzed reaction that has the greatest acceleration above normal rate
Becky Kriger

Polysaccharides - Chemistry Encyclopedia - 0 views

  • Polysaccharides are long polymers of monosaccharides and their derivatives. Unlike proteins or nucleic acids, these polymers can be either linear or branched, and they can contain only one type of monosaccharide (homopolysaccharides), or more than one (heteropolysaccharides)
  • Starch is a homopolysaccharide and has two forms: amylopectin and α-amylose. In nature, starch is approximately 10 to 30 percent α-amylose.
  • Starch is the main energy reserve in plants; glycogen is the main energy reserve in animals
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  • In contrast to amylopectin, which comprises 70 to 90 percent of natural starch, α-amylose is a branching polysaccharide.
  • Branches occur at every twelve to thirty residues along a chain of α (1→4) linked glucoses. As a result, amylopectin has one reducing end and many nonreducing ends.
  • Amylopectin and α-amylose are broken down by the enzyme amylase. In animals, salivary α-amylase begins the digestion process in the mouth. Pancreatic α-amylase continues the process in the intestine.
  • Glycogen is the energy storage carbohydrate in animals. Glycogen is found mainly in the liver (where it is responsible for up to 10 percent of liver mass) and skeletal muscle (1 to 2 percent of skeletal muscle mass)
  • However, glycogen branches more abundantly than amylopectin, with branches at every eight to twelve residues. As a result, it has many more nonreducing ends. Glycogen is broken down at these nonreducing ends by the enzyme glycogen phosphorylase to release glucose for energy.
  • The primary structural homopolysaccharides are cellulose and chitin. Cellulose, a major component of plant cell walls, is the most abundant natural polymer on Earth.
  • Like α-amylose, cellulose is a linear polysaccharide composed entirely of glucose. However, in cellulose the glucose residues occur in β(1→4) linkage rather than α (1→4) (see Figure 1).
  • In addition, individual cellulose strands can form hydrogen bonds with one another to provide additional strength. Most animals, including humans, lack the enzymes necessary to dissolve α(1→4) linkages and so cannot digest cellulose
  • The animals that can (such as ruminants) do so via a symbiosis with bacteria that secrete cellulose-degrading enzymes.
  • The second most abundant polymer on Earth is chitin. Chitin comprises much of the exoskeletons of crustaceans, insects, and spiders, as well as the cell walls of fungi. Structurally, chitin is very similar to cellulose, except that its basic monosaccharide is N-acetylglucosamine
Becky Kriger

Chemistry - Condensation polymer - 0 views

  • Condensation polymers are any class of polymer formed through a condensation reaction, as opposed to addition polymers which involve the reaction of unsaturated monomers. Types of condensation polymer include polyamides and polyesters.
  • The carboxylic acids and amines link to form peptide bonds, also known as amide groups. Proteins are condensation polymers made from amino acid monomers. Carbohydrates are also condensation polymers made from sugar monomers such as glucose and galactose.
  • Condensation Polymers, unlike Addition polymers are bio-degradable. The peptide or ester bonds between monomers can be hydrolysed by acid catalysts or bacterial enzymes breaking the polymer chain into smaller pieces.
Becky Kriger

Biopolymers and Bioplastics - 0 views

  • Biopolymers are polymers which are present in, or created by, living organisms. These include polymers from renewable resources that can be polymerized to create bioplastics. Bioplastics are plastics manufactured using biopolymers, and are biodegradable.
  • There are two main types of biopolymers: those that come from living organisms; and, those which need to be polymerized but come from renewable resources. Both types are used in the production of bioplastics
  • Biopolymer Natural Source What is it? Cellulose Wood, cotton, corn, wheat, and others This polymer is made up of glucose. It is the main component of plant cell walls. Soy protein Soybeans Protein which naturally occurs in the soy plant. Starch Corn, potatoes, wheat, tapioca, and others This polymer is one way carbohydrates are stored in plant tissue. It is a polymer made up of glucose. It is not found in animal tissues. Polyesters Bacteria These polyesters are created through naturally occurring chemical reactions that are carried out by certain types of bacteria.
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  • Biopolymer Natural Source What is it? Lactic Acid Beets, corn, potatoes, and others Produced through fermentation of sugar feedstocks, such as beets, and by converting starch in corn, potatoes, or other starch sources. It is polymerized to produce polylactic acid -- a polymer that is used to produce plastic. Triglycerides Vegetable oils These form a large part of the storage lipids found in plant and animal cells. Vegetable oils are one possible source of triglycerides that can be polymerized into plastics.
  • Using Fermentation to Produce Plastics Fermentation, used for hundreds of years by humans, is even more powerful when coupled with new biotechnology techniques.
  • Today, fermentation can be carried out with genetically engineered microorganisms, specially designed for the conditions under which fermentation takes place,
  • Fermentation, in fact, is the process by which bacteria can be used to create polyesters. Bacteria called Ralstonia eutropha are used to do this. The bacteria use the sugar of harvested plants, such as corn, to fuel their cellular processes. The by-product of these cellular processes is the polymer.
  • Lactic acid is fermented from sugar, much like the process used to directly manufacture polymers by bacteria. However, in this fermentation process, the final product of fermentation is lactic acid, rather than a polymer. After the lactic acid is produced, it is converted to polylactic acid using traditional polymerization processes.
  • Plants are becoming factories for the production of plastics. Researchers created a Arabidopis thaliana plant through genetic engineering. The plant contains the enzymes used by bacteria to create plastics. Bacteria create the plastic through the conversion of sunlight into energy. The researchers have transferred the gene that codes for this enzyme into the plant, as a result the plant produces plastic through its cellular processes. The plant is harvested and the plastic is extracted from it using a solvent. The liquid resulting from this process is distilled to separate the solvent from the plastic.
  • Currently, fossil fuel is still used as an energy source during the production process. This has raised questions by some regarding how much fossil fuel is actually saved by manufacturing bioplastics. Only a few processes have emerged that actually use less energy in the production process.
  • Energy use is not the only concern when it comes to biopolymers and bioplastics. There are also concerns about how to balance the need to grow plants for food, and the need to grow plants for use as raw materials. Agricultural space needs to be shared. Researchers are looking into creating a plant that can be used for food, but also as feedstock for plastic production.
  • Biopolymers and bioplastics are the main components in creating a sustainable plastics industry. These products reduce the dependence on non-renewable fossil fuels, and are easily biodegradable. Together, this greatly limits the environmental impacts of plastic use and manufacture. Also, characteristics such as being biodegradable make plastics more acceptable for long term use by society. It is likely that in the long term, these products will mean plastics will remain affordable, even as fossil fuel reserves diminish.
Becky Kriger

Polypeptides and Proteins - 0 views

  • A peptide (def) is two or more amino acids joined together by peptide bonds, and a polypeptide (def) is a chain of many amino acids. A protein contains one or more polypeptides. Therefore, proteins (def) are long chains of amino acids held together by peptide bonds.
  • The secondary structure (def) of the protein is due to hydrogen bonds that form between the oxygen atom of one amino acid and the nitrogen atom of another. This gives the protein or polypeptide the two-dimensional form of an alpha-helix or a beta-pleated sheet (see Fig. 4).
  • Amino acids (def) are the building blocks for proteins. All amino acids contain an amino or NH2 group and a carboxyl (acid) or COOH group. There are 20 different amino acids commonly found in proteins
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  • To form polypeptides and proteins, amino acids are joined together by peptide bonds (def), in which the amino or NH2 of one amino acid bonds to the carboxyl (acid) or COOH group of another amino acid as shown in (see Fig. 2). Animation showing the formation of a peptide bond.
  • The actual order of the amino acids in the protein is called its primary structure (def) (see Fig. 3) and is determined by DNA.
  • it is commonly said that the order of deoxyribonucleotide bases (def) in a gene determines the amino acid sequence of a particular protein. Since certain amino acids can interact with other amino acids in the same protein, this primary structure ultimately determines the final shape and therefore the chemical and physical properties of the protein.
  • In globular proteins such as enzymes, the long chain of amino acids becomes folded into a three-dimensional functional shape or tertiary structure (def).
  • In some cases, such as with antibody molecules and hemoglobin, several polypeptides may bond together to form a quaternary structure (def) (see Fig 6).
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