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Mike Chelen

rapodaca's cheminfbenchmark at master - GitHub - 0 views

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    Cheminformatics Benchmark Toolkit --------------------------------- Why? Because we want to: 1. measure if a patch improves performance 2. compare cheminformatics toolkits Project ------- This is an open project, and anyone can contribute or patch the tests, in order to attempt to create a balanced and fair test suite impartial to the toolkit being tested. Versioning ---------- When reporting results for a toolkit for a test, always report the version of ChemInfBenchmark release, as well as the test number as listed below. The tests --------- Toolkits should always to the bare minimum; any extra things will only make the outcome unfavourable, but toolkits may do that if they wish. 1. Convert an SD file to XYZ 2. Calculate the molecular mass of the entries in an SD file 3. Convert an SD file to CML 2.5 4. Perform a substructure match on all of the entries in an SD file 5. Parse a collection of SMILES - this will be a measure of performance and completeness 6. Detect rings in a collection of molecules. 7. Parse (not perform the search) for a collection of SMARTS patterns - this will be a measure of performance and completeness Running tests ------------- Each test is run via a configure file. A test can be run by $ ant -Dconfig=test-config.xml run
Mike Chelen

jandot's parp at master - GitHub - 0 views

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    A tool for visualizing abnormal read pairs (i.e. too far apart, forward-forward or reverse-reverse). One of the ways to identify structural variation in a genome is to look at mapping of a read-pair library on a reference genome. Any read-pair (i.e. the ends of the same clone) normally maps in a forward-reverse orientation at a distance from each other that corresponds to the insert size of the clone library. Structural variation between the reference genome used for mapping and the genome used to create the clone library will cause the reads to map in the wrong orientation (i.e. forward-forward or reverse-reverse; indicating an inversion) or at too large or too small a distance (indicating an insertion or deletion in the sample, respectively). pARP basically displays raw read pair mapping data and does not make any assumptions on models as might be required when doing a statistical analysis of the same data. By showing a birds' eye view it helps in interpreting what structural variations are present.
creativebiolabs

hapten antibody - Creative Biolabs - 0 views

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    A hapten is a small molecule that can elicit an immune response only when conjugated with a large carrier such as a protein. Typical haptens include drugs, urushiol, quinone, steroids, etc. Peptides and non-protein antigens usually need conjugating to a carrier protein (such as BSA (bovine serum albumin) or KLH (keyhole limpet hemocyanin) so as to be good immunogens. Additionally, haptens should be administered with an adjuvant to ensure a high quality immune response.
Mike Chelen

BLAST: Basic Local Alignment Search Tool - 0 views

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    nucleotide blast Search a nucleotide database using a nucleotide query Algorithms: blastn, megablast, discontiguous megablast protein blast Search protein database using a protein query Algorithms: blastp, psi-blast, phi-blast blastx Search protein database using a translated nucleotide query tblastn Search translated nucleotide database using a protein query tblastx Search translated nucleotide database using a translated nucleotide query
Mike Chelen

Main Page - Open Bioinformatics Foundation - 1 views

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    The Open Bioinformatics Foundation or O|B|F is a non profit, volunteer run organization focused on supporting open source programming in bioinformatics. The foundation grew out of the volunteer projects BioPerl, BioJava and BioPython and was formally incorporated in order to handle our modest requirements of hardware ownership, domain name management and funding for conferences and workshops.The Foundation does not participate directly in the development or structure of the open source work, but as the members of the foundation are drawn from the member projects, there is clear commonality of direction and purpose. Occasionally the O|B|F directors may make announcements about our direction or purpose (a recent one was on the licensing of academic software) when the board feels there is a need to clarify matters, but in general we prefer to remain simply the administrative support organization for our member projects. Our main activities are: * Underwriting and supporting the BOSC conferences * Organizing and supporting developer-centric "hackathon" events * Managing our servers, colocation facilities, bank account & other assets We are incorporated in the state of Delaware, USA as a not-for-profit company.
buycashapp33

Buy Verified CashApp Accounts - UK - 0 views

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    If you're looking for a way to send and receive money, you may be considering the Cash App. The CashApp is a mobile payment service that allows users to transfer money to one another. You can also use the Cash App to pay for goods and services at certain businesses. And, if you have a Cash Card, you can use it like a debit card, too. If you're thinking about signing up for the CashApp, you may be wondering how much it costs. Well, the good news is that the Cash App is free to download and use.
Philip Solars

Go Solar Today! - 2 views

I feel so lucky that I shifted to solar energy with the help of National Solar Traders. Their high quality wholesale solar equipment have really helped me saved much since I no longer have electric...

started by Philip Solars on 29 Nov 12 no follow-up yet
pedrobeltrao

BioMed Central | Full text | Systems biology by the rules: hybrid intelligent systems f... - 1 views

  • Expert knowledge in journal articles
    • pedrobeltrao
       
      What is expert knowledge really ?
  • fuzzy logic
    • pedrobeltrao
       
      Wikipedia: fuzzy logic
  • www.chip.ord/~wbosl/Software/Bionet
    • pedrobeltrao
       
      the link
creativebiolabs

antibody generation - Creative Biolabs - 0 views

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    As an industry leader in antibody engineering field, experts from Creative Biolabs have developed CreativeAbâ„¢ antibodies in order to increase the efficacy of current therapeutic antibodies. Bispecific antibodies (BsAbs) are bioengineered antibodies that contain two different binding sites within a single molecule, which can specifically bind two different types of antigen. The most widely used application of bispecific antibody is in cancer immunotherapy, which creates a therapeutic treatment approach for diseases with specific medical needs.
Mike Chelen

SourceForge.net: Java Universal Network/Graph Framework: Java Universal Network/Graph F... - 1 views

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    JUNG provides a common and extendible language for the modeling, analysis, and visualization of data that can be represented as a graph or network.
Mike Chelen

Visualization: BioHeatMap - A Heatmap for Gene Expression and Other Data - 4 views

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    Heatmaps are a useful way to visualize matricies of data. Scientists often use green-black-red heatmaps to visualize gene expression data from microarrays. This visualization supports both three color heatmaps (ex: green to black to red) and two color heatmaps (ex: white to yellow).
Philip Solars

The Must Have Solar Equipment - 1 views

Due to the increasing cost of electricity bills, I have finally decided to switch to solar energy. Aside from being free, it also helps save mother earth. I must admit that at first I was confused ...

started by Philip Solars on 04 Oct 12 no follow-up yet
Irene Jessica

Glutathione - 1 views

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    Glutathione (GSH) is an important antioxidant in plants, animals, fungi, and some bacteria and archaea, which can protect important cellular components from reactive oxygen species' damage. It is a tripeptide with a gamma peptide linkage between the carboxyl group of the glutamate side-chain and the amine group of cysteine.
creativebiolabs

phage display antibodies - 0 views

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    Creative BioLabs is a service provider that develops and commercializes a full range of integrated innovative Bio-fishing services based on phage display technology.Call 1-631-871-5806 or email at contcat@creative-biolabs.com to know more detailed information. You can also visit http://www.creative-biolabs.com/Phage-Display-Platform.html.
Mike Chelen

Welcome to BioPuppy Linux - 0 views

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    BioPuppy is an minimal Linux OS and electronic workbench for bio-informatics and computational biology. It has been designed to meet the needs of beginners, learners, students, staffs and Research scholars. BioPuppy is available as a live CD cum installation CD [and in USB Pen drive] and containing all the required software to boot the computer with ready to use bio-informatics tools. BioPuppy is based of the Puppy Linux. The another objective of this BioPuppy is small in size. Our estimated size of BioPuppy is ~150MB.
Mike Chelen

SEQanswers Home - 0 views

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    SEQanswers is a discussion forum and information source for next generation sequencing.
Mike Chelen

Call for papers for Data Mining in Protein Interaction Networks from Bioinformatics for... - 0 views

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    We are organizing a special session on "Data Mining in Protein Interaction Networks" in ISIBM conference (2009 ISIBM International Joint Conferences on Bioinformatics, Systems Biology and Intelligent Computing). Please refer the call for paper in http://www.isibm.org/IJCBS/sessions.html for more information of this special sessions (The main conference web site is at http://www.isibm.org/IJCBS/index.html).
Mike Chelen

WWMM Web Services - 0 views

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    These Web Services can be used to create applications on Molecules and their Properties. Details of the Web Services can be found here. If you are new to using these Web Services, please take a few minutes to read the instructions here.
Mike Chelen

SourceForge.net: Taverna - 0 views

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    A collaborative workflow builder and enactor for e-Sciences, in particular bioinformatics.
creativebiolabs

fab production - 0 views

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    Creative Biolabs is committed to provide advanced tools for scFv/Fab expression and purification. As a leading supplier for reagents in the biotechnology field, we understand the importance of convenient and easy-to-use systems for high level expression and sample purification. We invite you to review our growing range of expression systems resulting from our experience in cloning, overexpression and purification.
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