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Bounce is a neat application that not only allows you to make annotated screen captures of websites but also allows you to instantly share those screen captures with others. To use Bounce, type in the url of any website then click "Bounce." Bounce will then create an image of that website on which you can draw boxes and annotate those boxes. You can create as many boxes and notes as you like. When you're done creating notes, Bounce will provide you with a unique url for your screen captures that you can share with others. If you create a Bounce account (optional) you and other Bounce users can annotate the same screen capture.

Annotate and highlight on PDFs, today, 4/16/12 on sale for $.99

annotate PDFs on ipads

article on how to use Diigo as your own research tool 

Draw and or annotate on maps

free until 2/14/12. allows user to add text to photos

GoodReader for iPad $4.99 Here you have an option to type text directly on PDF pages, you can highlight paragraphs like a yellow marker or annotate pages using the various freehand drawing tools.

enotebook app allows students to annotate direclty onto powerpoint, word PDFs