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The outbreak has been dubbed swine flu — now officially called influenza A(H1N1) — because scientists believe it started in pigs, but they do not know if that was recently or years ago. The name change was designed to allay fears about pigs and eating pork.

The great majority of Egyptians are Muslim and do not eat pork because of religious restrictions, but about 10 percent of the population is Coptic Christian. As a result, Egyptian pig farmers are overwhelmingly Christian. And although some of the country’s Christians are middle class or wealthy, the Christian farmers are generally poor.

On Thursday, several urban pig farmers in Cairo said they see the government’s decision as just another expression of Egyptian Muslims’ resentment against Christians. Last year, there were several violent incidents that some believed were aimed at Christians, including the kidnapping and beating of monks. The Egyptian government denied the incidents had sectarian overtones, saying they were each part of other disputes, including a fight over land.

Mr. Girgis lives with his extended family, about 30 people, in the first two floors of a building that leans against a cliff. His 60 small pigs live on the ground floor. They have dark, furry skin, and their squeals can be heard a block away from Mr. Girgis’ home.Many of Cairo’s pig farmers live in similar conditions, sharing their small spaces in the teeming city with their animals. After international health officials criticized Egypt’s decision to kill about 300,000 pigs, the Agriculture Ministry’s head of infectious diseases, Saber Abdel Aziz Galal, explained that the cull was “a general health measure,” according to Agence France-Presse."It is good to restructure this kind of breeding in good farms, not on rubbish," the agency quoted him as saying.“We will build new farms in special areas, like in Europe,” he said. “Within two years the pigs will return, but we need first to build new farms."