Group items tagged

Someday, all the fossil fuels that used to be in the ground will be burned. After that, in about a millennium, the earth will dissolve most of the resulting carbon dioxide into the oceans. (The oceans have dissolved in them “40 times more carbon than the atmosphere contains, a total of 30 trillion tons, or 30 times the world’s coal reserves.”) The dissolving will leave the concentration in the atmosphere only slightly higher than today’s. Then “over tens of millennia, or perhaps hundreds” the earth will transfer the excess carbon dioxide into its rocks, “eventually returning levels in the sea and air to what they were before humans arrived on the scene.” This will take an eternity as humans reckon, but a blink in geologic time.

It seems, Laughlin says, that “something, presumably a geologic regulatory process, fixed the world’s carbon dioxide levels before humans arrived” with their SUVs and computers. Some scientists argue that “the photosynthetic machinery of plants seems optimized” to certain carbon dioxide levels. But “most models, even pessimistic ones,” envision “a thousand-year carbon dioxide pulse followed by glacially slow decay back to the pre-civilization situation.”

humans can “do damage persisting for geologic time” by “biodiversity loss”—extinctions that are, unlike carbon dioxide excesses, permanent. The earth did not reverse the extinction of the dinosaurs. Today extinctions result mostly from human population pressures—habitat destruction, pesticides, etc.—but “slowing man-made extinctions in a meaningful way would require drastically reducing the world’s human population.” Which will not happen.

To avoid mixing fact and speculation, earth scientists are, Laughlin says, “ultraconservative,” meaning they focus on the present and the immediate future: “[They] go to extraordinary lengths to prove by means of measurement that the globe is warming now, the ocean is acidifying now, fossil fuel is being exhausted now, and so forth, even though these things are self-evident in geologic time.”

Climate change over geologic time is, Laughlin says, something the earth has done “on its own without asking anyone’s permission or explaining itself.” People can cause climate change, but major glacial episodes have occurred “at regular intervals of 100,000 years,” always “a slow, steady cooling followed by abrupt warming back to conditions similar to today’s.”

Six million years ago the Mediterranean dried up. Ninety million years ago there were alligators in the Arctic. Three hundred million years ago Northern Europe was a desert and coal formed in Antarctica. “One thing we know for sure,” Laughlin says about these convulsions, “is that people weren’t involved.”

Physical means of amelioration, such as changing the planetary albedo, are the subject of other papers of this theme issue and I thought it would be useful here to describe physiological methods for geoengineering. These include tree planting, the fertilization of ocean algal ecosystems with iron, the direct synthesis of food from inorganic raw materials and the production of biofuels.

Tree planting would seem to be a sensible way to remove CO2 naturally from the air, at least for the time it takes for the tree to reach maturity. But in practice the clearance of forests for farm land and biofuels is now proceeding so rapidly that there is little chance that tree planting could keep pace.

Oceans cover over 70 per cent of the Earth's surface and are uninhabited by humans. In addition, most of the ocean surface waters carry only a sparse population of photosynthetic organisms, mainly because the mineral and other nutrients in the water below the thermocline do not readily mix with the warmer surface layer. Some essential nutrients such as iron are present in suboptimal abundance even where other nutrients are present and this led to the suggestion by John Martin in a lecture in 1991 that fertilization with the trace nutrient iron would allow algal blooms to develop that would cool the Earth by removing CO2

The Earth system is dynamically stable but with strong feedbacks. Its behaviour resembles more the physiology of a living organism than that of the equilibrium box models of the last century

For almost all other ailments, there was nothing available but nostrums and comforting words. At that time, despite a well-founded science of physiology, we were still ignorant about the human body or the host–parasite relationship it had with other organisms. Wise physicians knew that letting nature take its course without intervention would often allow natural self-regulation to make the cure. They were not averse to claiming credit for their skill when this happened.

The alternative is the acceptance of a massive natural cull of humanity and a return to an Earth that freely regulates itself but in the hot state.

Global heating would not have happened but for the rapid expansion in numbers and wealth of humanity. Had we heeded Malthus's warning and kept the human population to less than one billion, we would not now be facing a torrid future. Whether or not we go for Bali or use geoengineering, the planet is likely, massively and cruelly, to cull us, in the same merciless way that we have eliminated so many species by changing their environment into one where survival is difficult.

There are already three heavyweight groups that could be considered the official keepers of the world's climate data. Each publishes its own figures that feed into the UN's Intergovernmental Panel on Climate Change. Nasa's Goddard Institute for Space Studies in New York City produces a rolling estimate of the world's warming. A separate assessment comes from another US agency, the National Oceanic and Atmospheric Administration (Noaa). The third group is based in the UK and led by the Met Office. They all take readings from instruments around the world to come up with a rolling record of the Earth's mean surface temperature. The numbers differ because each group uses its own dataset and does its own analysis, but they show a similar trend. Since pre-industrial times, all point to a warming of around 0.75C.

You might think three groups was enough, but Muller rolls out a list of shortcomings, some real, some perceived, that he suspects might undermine public confidence in global warming records. For a start, he says, warming trends are not based on all the available temperature records. The data that is used is filtered and might not be as representative as it could be. He also cites a poor history of transparency in climate science, though others argue many climate records and the tools to analyse them have been public for years.

Then there is the fiasco of 2009 that saw roughly 1,000 emails from a server at the University of East Anglia's Climatic Research Unit (CRU) find their way on to the internet. The fuss over the messages, inevitably dubbed Climategate, gave Muller's nascent project added impetus. Climate sceptics had already attacked James Hansen, head of the Nasa group, for making political statements on climate change while maintaining his role as an objective scientist. The Climategate emails fuelled their protests. "With CRU's credibility undergoing a severe test, it was all the more important to have a new team jump in, do the analysis fresh and address all of the legitimate issues raised by sceptics," says Muller.

This latest point is where Muller faces his most delicate challenge. To concede that climate sceptics raise fair criticisms means acknowledging that scientists and government agencies have got things wrong, or at least could do better. But the debate around global warming is so highly charged that open discussion, which science requires, can be difficult to hold in public. At worst, criticising poor climate science can be taken as an attack on science itself, a knee-jerk reaction that has unhealthy consequences. "Scientists will jump to the defence of alarmists because they don't recognise that the alarmists are exaggerating," Muller says.

The Berkeley Earth project came together more than a year ago, when Muller rang David Brillinger, a statistics professor at Berkeley and the man Nasa called when it wanted someone to check its risk estimates of space debris smashing into the International Space Station. He wanted Brillinger to oversee every stage of the project. Brillinger accepted straight away. Since the first meeting he has advised the scientists on how best to analyse their data and what pitfalls to avoid. "You can think of statisticians as the keepers of the scientific method, " Brillinger told me. "Can scientists and doctors reasonably draw the conclusions they are setting down? That's what we're here for."

For the rest of the team, Muller says he picked scientists known for original thinking. One is Saul Perlmutter, the Berkeley physicist who found evidence that the universe is expanding at an ever faster rate, courtesy of mysterious "dark energy" that pushes against gravity. Another is Art Rosenfeld, the last student of the legendary Manhattan Project physicist Enrico Fermi, and something of a legend himself in energy research. Then there is Robert Jacobsen, a Berkeley physicist who is an expert on giant datasets; and Judith Curry, a climatologist at Georgia Institute of Technology, who has raised concerns over tribalism and hubris in climate science.

Robert Rohde, a young physicist who left Berkeley with a PhD last year, does most of the hard work. He has written software that trawls public databases, themselves the product of years of painstaking work, for global temperature records. These are compiled, de-duplicated and merged into one huge historical temperature record. The data, by all accounts, are a mess. There are 16 separate datasets in 14 different formats and they overlap, but not completely. Muller likens Rohde's achievement to Hercules's enormous task of cleaning the Augean stables.

The wealth of data Rohde has collected so far – and some dates back to the 1700s – makes for what Muller believes is the most complete historical record of land temperatures ever compiled. It will, of itself, Muller claims, be a priceless resource for anyone who wishes to study climate change. So far, Rohde has gathered records from 39,340 individual stations worldwide.

Publishing an extensive set of temperature records is the first goal of Muller's project. The second is to turn this vast haul of data into an assessment on global warming.

The big three groups – Nasa, Noaa and the Met Office – work out global warming trends by placing an imaginary grid over the planet and averaging temperatures records in each square. So for a given month, all the records in England and Wales might be averaged out to give one number. Muller's team will take temperature records from individual stations and weight them according to how reliable they are.

This is where the Berkeley group faces its toughest task by far and it will be judged on how well it deals with it. There are errors running through global warming data that arise from the simple fact that the global network of temperature stations was never designed or maintained to monitor climate change. The network grew in a piecemeal fashion, starting with temperature stations installed here and there, usually to record local weather.

Among the trickiest errors to deal with are so-called systematic biases, which skew temperature measurements in fiendishly complex ways. Stations get moved around, replaced with newer models, or swapped for instruments that record in celsius instead of fahrenheit. The times measurements are taken varies, from say 6am to 9pm. The accuracy of individual stations drift over time and even changes in the surroundings, such as growing trees, can shield a station more from wind and sun one year to the next. Each of these interferes with a station's temperature measurements, perhaps making it read too cold, or too hot. And these errors combine and build up.

This is the real mess that will take a Herculean effort to clean up. The Berkeley Earth team is using algorithms that automatically correct for some of the errors, a strategy Muller favours because it doesn't rely on human interference. When the team publishes its results, this is where the scrutiny will be most intense.

Despite the scale of the task, and the fact that world-class scientific organisations have been wrestling with it for decades, Muller is convinced his approach will lead to a better assessment of how much the world is warming. "I've told the team I don't know if global warming is more or less than we hear, but I do believe we can get a more precise number, and we can do it in a way that will cool the arguments over climate change, if nothing else," says Muller. "Science has its weaknesses and it doesn't have a stranglehold on the truth, but it has a way of approaching technical issues that is a closer approximation of truth than any other method we have."

It might not be a good sign that one prominent climate sceptic contacted by the Guardian, Canadian economist Ross McKitrick, had never heard of the project. Another, Stephen McIntyre, whom Muller has defended on some issues, hasn't followed the project either, but said "anything that [Muller] does will be well done". Phil Jones at the University of East Anglia was unclear on the details of the Berkeley project and didn't comment.

Elsewhere, Muller has qualified support from some of the biggest names in the business. At Nasa, Hansen welcomed the project, but warned against over-emphasising what he expects to be the minor differences between Berkeley's global warming assessment and those from the other groups. "We have enough trouble communicating with the public already," Hansen says. At the Met Office, Peter Stott, head of climate monitoring and attribution, was in favour of the project if it was open and peer-reviewed.

Peter Thorne, who left the Met Office's Hadley Centre last year to join the Co-operative Institute for Climate and Satellites in North Carolina, is enthusiastic about the Berkeley project but raises an eyebrow at some of Muller's claims. The Berkeley group will not be the first to put its data and tools online, he says. Teams at Nasa and Noaa have been doing this for many years. And while Muller may have more data, they add little real value, Thorne says. Most are records from stations installed from the 1950s onwards, and then only in a few regions, such as North America. "Do you really need 20 stations in one region to get a monthly temperature figure? The answer is no. Supersaturating your coverage doesn't give you much more bang for your buck," he says. They will, however, help researchers spot short-term regional variations in climate change, something that is likely to be valuable as climate change takes hold.

Despite his reservations, Thorne says climate science stands to benefit from Muller's project. "We need groups like Berkeley stepping up to the plate and taking this challenge on, because it's the only way we're going to move forwards. I wish there were 10 other groups doing this," he says.

Muller's project is organised under the auspices of Novim, a Santa Barbara-based non-profit organisation that uses science to find answers to the most pressing issues facing society and to publish them "without advocacy or agenda". Funding has come from a variety of places, including the Fund for Innovative Climate and Energy Research (funded by Bill Gates), and the Department of Energy's Lawrence Berkeley Lab. One donor has had some climate bloggers up in arms: the man behind the Charles G Koch Charitable Foundation owns, with his brother David, Koch Industries, a company Greenpeace called a "kingpin of climate science denial". On this point, Muller says the project has taken money from right and left alike.

No one who spoke to the Guardian about the Berkeley Earth project believed it would shake the faith of the minority who have set their minds against global warming. "As new kids on the block, I think they will be given a favourable view by people, but I don't think it will fundamentally change people's minds," says Thorne. Brillinger has reservations too. "There are people you are never going to change. They have their beliefs and they're not going to back away from them."

The right-wing ideologues were sorely disappointed, and reacted viciously in the political sphere by attacking their own scientist, but Muller’s scientific integrity overcame any biases he might have harbored at the beginning. He “called ‘em as he saw ‘em” and told truth to power.

it speaks well of the scientific process when a prominent skeptic like Muller does his job properly and admits that his original biases were wrong. As reported in the Los Angeles Times : Ken Caldeira, an atmospheric scientist at the Carnegie Institution for Science, which contributed some funding to the Berkeley effort, said Muller’s statement to Congress was “honorable” in recognizing that “previous temperature reconstructions basically got it right…. Willingness to revise views in the face of empirical data is the hallmark of the good scientific process.”

This is the essence of the scientific method at its best. There may be biases in our perceptions, and we may want to find data that fits our preconceptions about the world, but if science is done properly, we get a real answer, often one we did not expect or didn’t want to hear. That’s the true test of when science is giving us a reality check: when it tells us “an inconvenient truth”, something we do not like, but is inescapable if one follows the scientific method and analyzes the data honestly.

Sit down before fact as a little child, be prepared to give up every preconceived notion, follow humbly wherever and to whatever abysses nature leads, or you shall learn nothing.

Muller's data (black line) tracks pretty well with the three established data sets. This is just an initial sampling of Muller's data—just 2 percent of the 1.6 billion records he's working with—but these early findings are incredibly consistent with the previous findings

In his testimony, Muller made these points (emphasis mine): The Berkeley Earth Surface Temperature project was created to make the best possible estimate of global temperature change using as complete a record of measurements as possible and by applying novel methods for the estimation and elimination of systematic biases. We see a global warming trend that is very similar to that previously reported by the other groups. The world temperature data has sufficient integrity to be used to determine global temperature trends. Despite potential biases in the data, methods of analysis can be used to reduce bias effects well enough to enable us to measure long-term Earth temperature changes. Data integrity is adequate. Based on our initial work at Berkeley Earth, I believe that some of the most worrisome biases are less of a problem than I had previously thought.

For the many climate deniers who hang their arguments on Muller's "doubts," this is a severe blow. Of course, when the hard scientific truths are inconvenient, climate denying House leaders can always call a lawyer, a marketing professor, and an economist into the scientific hearing.

perhaps the difference in opinions on this subject expressed by Shindell and Caldeira is nothing more than an academic turf battle over what it means for policy makers to focus on "climate" -- with one wanting the term (and justifications for action invoking that term) to be reserved for long-term climate issues centered on carbon dioxide and the other focused on a broader definition of climate and its impacts.  If so, then it is important to realize that such turf battles have practical consequences. Shindell's breath of fresh air gets the last word with his explanation why it is that we must consider long- and short- term climate impacts at the same time, and how we balance them will reflect a host of non-scientific considerations: So rather than set one against the other, I’d view this as analogous to research on childhood leukemia versus Alzheimer’s. If you’re an advocate for child’s health, you may care more about the former, and if you’re a retiree you might care more about the latter. One could argue about which is most worthy based on number of cases, years of life lost, etc., but in the end it’s clear that both diseases are worth combating and any ranking of one over the other is a value judgement. Similarly, there is no scientific basis on which to decide which impacts of climate change are most important, and we can only conclude that both controls are worthwhile. The UNEP/WMO Assessment provides clear information on the benefits of short-lived forcer reductions so that decision-makers, and society at large, can decide how best to use limited resources.

If we eliminated emissions of methane and black carbon, but did nothing about carbon dioxide we would have delayedThis presupposes that CO2 emissions can be capped at current levels without economic devastation or that immediate economic devastation is warranted.

The finding comes at a critical moment for NOAA as some newly empowered Republican House members seek to rein in the Environmental Protection Agency’s plans to regulate greenhouse gas emissions, often contending that the science underpinning global warming is flawed. NOAA is the federal agency tasked with monitoring climate data.

The inquiry into NOAA’s conduct was requested last May by Senator James M. Inhofe, Republican of Oklahoma, who has challenged the science underlying human-induced climate change. Mr. Inhofe was acting in response to the controversy over the e-mail messages, which were stolen from the Climatic Research Unit at the University of East Anglia in England, a major hub of climate research. Mr. Inhofe asked the inspector general of the Commerce Department to investigate how NOAA scientists responded internally to the leaked e-mails. Of 1,073 messages, 289 were exchanges with NOAA scientists.

The inspector general reviewed the 1,073 e-mails, and interviewed Dr. Lubchenco and staff members about their exchanges. The report did not find scientific misconduct; it did however, challenge the agency over its handling of some Freedom of Information Act requests in 2007. And it noted the inappropriateness of e-mailing a collage cartoon depicting Senator Inhofe and five other climate skeptics marooned on a melting iceberg that passed between two NOAA scientists.

The report was not a review of the climate data itself. It joins a series of investigations by the British House of Commons, Pennsylvania State University, the InterAcademy Council and the National Research Council into the leaked e-mails that have exonerated the scientists involved of scientific wrongdoing.

But Mr. Inhofe said the report was far from a clean bill of health for the agency and that contrary to its executive summary, showed that the scientists “engaged in data manipulation.”

“It also appears that one senior NOAA employee possibly thwarted the release of important federal scientific information for the public to assess and analyze,” he said, referring to an employee’s failure to provide material related to work for the Intergovernmental Panel on Climate Change, a different body that compiles research, in response to a Freedom of Information request.

8) If you publish results to your website and errors are found, we will accuse you of a Very Serious Error irregardless of severity (see point #1) and bemoan the press release you made about your results even though you won't remember making any press release about your results.

9) With regard to point #8 above, at extra cost and time to yourself you must employ someone to thoroughly check each monthly update before is is published online, even if this delays publication of the results till the end of the month. You might be surprised at this because no-one actually relies on such freshly published data anyway and aren't the many eyes of blog audit better than a single pair of eyes? Well that's irrelevant. See points #1 and #810) If you don't publish results promptly at the start of the month on the public website, but instead say publish the results to a private site for checks to be performed before release, we will accuse you of engaging in unscientific-like secrecy and massaging the data behind closed doors.

14) If any region/station shows a warming trend that doesn't match the raw data, and we can't understand why, we will accuse you of fraud and dismiss the entire record. Don't expect us to have to read anything to understand results.

15) You must provide all input datasets on your website. It's no good referencing NOAAs site and saying they "own" the GHCN data for example. I don't want their GHCN raw temperatures file, I want the one on your hard drive which you used for the analysis, even if you claim they are the same. If you don't do this we will accuse you of hiding the data and preventing us checking your results.

24. In the event that you comply with all of the above, we will point out that a mere hundred-odd years of data is irrelevant next to the 4.5 billion year history of Earth. So why do you even bother?

23) In the unlikely event that I haven't wasted enough of your time forcing you to comply with the above rules, I also demand to see all emails you have sent or will send during the period 1950 to 2050 that contain any of these keywords

22) We don't need any scrutiny because our role isn't important.

17) We will treat your record as if no alternative exists. As if your record is the make or break of Something Really Important (see point #1) and we just can't check the results in any other way.

16) You are to blame for any station data your team uses. If we find out that a station you use is next to an AC Unit, we will conclude you personally planted the thermometer there to deliberately get warming.

an article today by Roger Pielke Nr. (no relation) that posited the fascinating concept that thermometers are just as capricious and unreliable proxies for temperature as tree rings. In fact probably more so, and re-computing global temperature by gristlecone pines would reveal the true trend of global cooling, which will be in all our best interests and definitely NOT just those of well paying corporate entities.

Even then Gardner was bemoaning that some beliefs never seem to go out of vogue, as he recalled an H. L. Mencken quip from the 1920s: "Heave an egg out of a Pullman window, and you will hit a Fundamentalist almost anywhere in the U.S. today." Gardner cautions that when religious superstition should be on the wane, it is easy "to forget that thousands of high school teachers of biology, in many of our southern states, are still afraid to teach the theory of evolution for fear of losing their jobs." Today creationism has spread northward and mutated into the oxymoronic form of "creation science."

the differences between science and pseudoscience. On the one extreme we have ideas that are most certainly false, "such as the dianetic view that a one-day-old embryo can make sound recordings of its mother's conversation." In the borderlands between the two "are theories advanced as working hypotheses, but highly debatable because of the lack of sufficient data." Of these Gardner selects a most propitious propitious example: "the theory that the universe is expanding." That theory would now fall at the other extreme end of the spectrum, where lie "theories al- most certainly true, such as the belief that the Earth is round or that men and beasts are distant cousins."

How can we tell if someone is a scientific crank? Gardner offers this advice: (1) "First and most important of these traits is that cranks work in almost total isolation from their colleagues." Cranks typically do not understand how the scientific process operates—that they need to try out their ideas on colleagues, attend conferences and publish their hypotheses in peer-reviewed journals before announcing to the world their startling discovery. Of course, when you explain this to them they say that their ideas are too radical for the conservative scientific establishment to accept.

(2) "A second characteristic of the pseudo-scientist, which greatly strengthens his isolation, is a tendency toward paranoia," which manifests itself in several ways: (1) He considers himself a genius. (2) He regards his colleagues, without exception, as ignorant blockheads....(3) He believes himself unjustly persecuted and discriminated against. The recognized societies refuse to let him lecture. The journals reject his papers and either ignore his books or assign them to "enemies" for review. It is all part of a dastardly plot. It never occurs to the crank that this opposition may be due to error in his work....(4) He has strong compulsions to focus his attacks on the greatest scientists and the best-established theories. When Newton was the outstanding name in physics, eccentric works in that science were violently anti-Newton. Today, with Einstein the father-symbol of authority, a crank theory of physics is likely to attack Einstein....(5) He often has a tendency to write in a complex jargon, in many cases making use of terms and phrases he himself has coined.

"If the present trend continues," Gardner concludes, "we can expect a wide variety of these men, with theories yet unimaginable, to put in their appearance in the years immediately ahead. They will write impressive books, give inspiring lectures, organize exciting cults. They may achieve a following of one—or one million. In any case, it will be well for ourselves and for society if we are on our guard against them."

I should add that I am not criticising TCM per se. Only acupuncture, a facet of TCM, albeit its most dramatic, is being scrutinised here. Chinese herbology must be analysed on its own merits.Interestingly, although acupuncture may be TCM's poster boy today, the Chinese physician in days of yore would have looked askance at it. Instead, his practice and prestige were based upon his grasp of the Chinese pharmacopoeia.

Acupuncture was left to the shamans and blood letters. After all, it was grounded, not in the knowledge of which herbs were best for what conditions, but astrology.

In Giovanni Maciocia's 2005 book, The Foundations Of Chinese Medicine: A Comprehensive Text For Acupuncturists And Herbalists, there is a chart showing the astrological provenance of acupuncture. The chart shows how the 12 main acupuncture meridians and the 12 main body segments correspond to the 12 Houses of the Chinese zodiac.

In Chinese cosmology, all life is animated by a numinous force called qi, the flow of which mirrors the sun's apparent 'movement' during the year through the ecliptic. (The ecliptic is the imaginary plane of the earth's orbit around the sun).Moreover, everything in the Chinese zodiac is mirrored on Earth and in Man. This was taught even in the earliest systematised TCM text, the Yellow Emperor's Canon Of Medicine, thus: 'Heaven is covered with constellations, Earth with waterways, and man with channels.'This 'as above, so below' doctrine means that if there is qi flowing around in the imaginary closed loop of the zodiac, there is qi flowing correspondingly in the body's closed loop of imaginary meridians as well.

Note that not only is acupuncture astrological in origin but also the astrology is based on a model of the universe which has the earth at its centre. This geocentric model was an erroneous idea widely accepted before the Copernican revolution.

So should doctors check the daily horoscopes of their patients?

Morris also makes heavy use of the “taking a quote out of context” strategy favored by creationists. His quotes are often from secondary sources and are incomplete.

A more scholarly (i.e. intellectually honest) approach would be to cite actual evidence to support a point. If you are going to cite an authority, then make sure the quote is relevant, in context, and complete.

And even better, cite a number of sources to show that the opinion is representative. Rather we get single, partial, and often outdated quotes without context.

(nature is not, it turns out, cleanly divided into “kinds”, which have no operational definition). He also repeats this canard: Such variation is often called microevolution, and these minor horizontal (or downward) changes occur fairly often, but such changes are not true “vertical” evolution. This is the microevolution/macroevolution false dichotomy. It is only “often called” this by creationists – not by actual evolutionary scientists. There is no theoretical or empirical division between macro and micro evolution. There is just evolution, which can result in the full spectrum of change from minor tweaks to major changes.

Morris wonders why there are no “dats” – dog-cat transitional species. He misses the hierarchical nature of evolution. As evolution proceeds, and creatures develop a greater and greater evolutionary history behind them, they increasingly are committed to their body plan. This results in a nestled hierarchy of groups – which is reflected in taxonomy (the naming scheme of living things).

once our distant ancestors developed the basic body plan of chordates, they were committed to that body plan. Subsequent evolution resulted in variations on that plan, each of which then developed further variations, etc. But evolution cannot go backward, undo evolutionary changes and then proceed down a different path. Once an evolutionary line has developed into a dog, evolution can produce variations on the dog, but it cannot go backwards and produce a cat.

Stephen J. Gould described this distinction as the difference between disparity and diversity. Disparity (the degree of morphological difference) actually decreases over evolutionary time, as lineages go extinct and the surviving lineages are committed to fewer and fewer basic body plans. Meanwhile, diversity (the number of variations on a body plan) within groups tends to increase over time.

the kind of evolutionary changes that were happening in the past, when species were relatively undifferentiated (compared to contemporary species) is indeed not happening today. Modern multi-cellular life has 600 million years of evolutionary history constraining their future evolution – which was not true of species at the base of the evolutionary tree. But modern species are indeed still evolving.

Here is a list of research documenting observed instances of speciation. The list is from 1995, and there are more recent examples to add to the list. Here are some more. And here is a good list with references of more recent cases.

Next Morris tries to convince the reader that there is no evidence for evolution in the past, focusing on the fossil record. He repeats the false claim (again, which I already dealt with) that there are no transitional fossils: Even those who believe in rapid evolution recognize that a considerable number of generations would be required for one distinct “kind” to evolve into another more complex kind. There ought, therefore, to be a considerable number of true transitional structures preserved in the fossils — after all, there are billions of non-transitional structures there! But (with the exception of a few very doubtful creatures such as the controversial feathered dinosaurs and the alleged walking whales), they are not there.

I deal with this question at length here, pointing out that there are numerous transitional fossils for the evolution of terrestrial vertebrates, mammals, whales, birds, turtles, and yes – humans from ape ancestors. There are many more examples, these are just some of my favorites.

Much of what follows (as you can see it takes far more space to correct the lies and distortions of Morris than it did to create them) is classic denialism – misinterpreting the state of the science, and confusing lack of information about the details of evolution with lack of confidence in the fact of evolution. Here are some examples – he quotes Niles Eldridge: “It is a simple ineluctable truth that virtually all members of a biota remain basically stable, with minor fluctuations, throughout their durations. . . .“ So how do evolutionists arrive at their evolutionary trees from fossils of organisms which didn’t change during their durations? Beware the “….” – that means that meaningful parts of the quote are being omitted. I happen to have the book (The Pattern of Evolution) from which Morris mined that particular quote. Here’s the rest of it: (Remember, by “biota” we mean the commonly preserved plants and animals of a particular geological interval, which occupy regions often as large as Roger Tory Peterson’s “eastern” region of North American birds.) And when these systems change – when the older species disappear, and new ones take their place – the change happens relatively abruptly and in lockstep fashion.”

Eldridge was one of the authors (with Gould) of punctuated equilibrium theory. This states that, if you look at the fossil record, what we see are species emerging, persisting with little change for a while, and then disappearing from the fossil record. They theorize that most species most of the time are at equilibrium with their environment, and so do not change much. But these periods of equilibrium are punctuated by disequilibrium – periods of change when species will have to migrate, evolve, or go extinct.

This does not mean that speciation does not take place. And if you look at the fossil record we see a pattern of descendant species emerging from ancestor species over time – in a nice evolutionary pattern. Morris gives a complete misrepresentation of Eldridge’s point – once again we see intellectual dishonesty in his methods of an astounding degree.

Regarding the atheism = religion comment, it reminds me of a great analogy that I first heard on twitter from Evil Eye. (paraphrase) “those that say atheism is a religion, is like saying ‘not collecting stamps’ is a hobby too.”

Morris next tackles the genetic evidence, writing: More often is the argument used that similar DNA structures in two different organisms proves common evolutionary ancestry. Neither argument is valid. There is no reason whatever why the Creator could not or would not use the same type of genetic code based on DNA for all His created life forms. This is evidence for intelligent design and creation, not evolution.

Here is an excellent summary of the multiple lines of molecular evidence for evolution. Basically, if we look at the sequence of DNA, the variations in trinucleotide codes for amino acids, and amino acids for proteins, and transposons within DNA we see a pattern that can only be explained by evolution (or a mischievous god who chose, for some reason, to make life look exactly as if it had evolved – a non-falsifiable notion).

The genetic code is essentially comprised of four letters (ACGT for DNA), and every triplet of three letters equates to a specific amino acid. There are 64 (4^3) possible three letter combinations, and 20 amino acids. A few combinations are used for housekeeping, like a code to indicate where a gene stops, but the rest code for amino acids. There are more combinations than amino acids, so most amino acids are coded for by multiple combinations. This means that a mutation that results in a one-letter change might alter from one code for a particular amino acid to another code for the same amino acid. This is called a silent mutation because it does not result in any change in the resulting protein.

It also means that there are very many possible codes for any individual protein. The question is – which codes out of the gazillions of possible codes do we find for each type of protein in different species. If each “kind” were created separately there would not need to be any relationship. Each kind could have it’s own variation, or they could all be identical if they were essentially copied (plus any mutations accruing since creation, which would be minimal). But if life evolved then we would expect that the exact sequence of DNA code would be similar in related species, but progressively different (through silent mutations) over evolutionary time.

This is precisely what we find – in every protein we have examined. This pattern is necessary if evolution were true. It cannot be explained by random chance (the probability is absurdly tiny – essentially zero). And it makes no sense from a creationist perspective. This same pattern (a branching hierarchy) emerges when we look at amino acid substitutions in proteins and other aspects of the genetic code.

Morris goes for the second law of thermodynamics again – in the exact way that I already addressed. He responds to scientists correctly pointing out that the Earth is an open system, by writing: This naive response to the entropy law is typical of evolutionary dissimulation. While it is true that local order can increase in an open system if certain conditions are met, the fact is that evolution does not meet those conditions. Simply saying that the earth is open to the energy from the sun says nothing about how that raw solar heat is converted into increased complexity in any system, open or closed. The fact is that the best known and most fundamental equation of thermodynamics says that the influx of heat into an open system will increase the entropy of that system, not decrease it. All known cases of decreased entropy (or increased organization) in open systems involve a guiding program of some sort and one or more energy conversion mechanisms.

Energy has to be transformed into a usable form in order to do the work necessary to decrease entropy. That’s right. That work is done by life. Plants take solar energy (again – I’m not sure what “raw solar heat” means) and convert it into food. That food fuels the processes of life, which include development and reproduction. Evolution emerges from those processes- therefore the conditions that Morris speaks of are met.

But Morris next makes a very confused argument: Evolution has neither of these. Mutations are not “organizing” mechanisms, but disorganizing (in accord with the second law). They are commonly harmful, sometimes neutral, but never beneficial (at least as far as observed mutations are concerned). Natural selection cannot generate order, but can only “sieve out” the disorganizing mutations presented to it, thereby conserving the existing order, but never generating new order.

The notion that evolution (as if it’s a thing) needs to use energy is hopelessly confused. Evolution is a process that emerges from the system of life – and life certainly can use solar energy to decrease its entropy, and by extension the entropy of the biosphere. Morris slips into what is often presented as an information argument.  (Yet again – already dealt with. The pattern here is that we are seeing a shuffling around of the same tired creationists arguments.) It is first not true that most mutations are harmful. Many are silent, and many of those that are not silent are not harmful. They may be neutral, they may be a mixed blessing, and their relative benefit vs harm is likely to be situational. They may be fatal. And they also may be simply beneficial.

Morris finishes with a long rambling argument that evolution is religion. Evolution is promoted by its practitioners as more than mere science. Evolution is promulgated as an ideology, a secular religion — a full-fledged alternative to Christianity, with meaning and morality . . . . Evolution is a religion. This was true of evolution in the beginning, and it is true of evolution still today. Morris ties evolution to atheism, which, he argues, makes it a religion. This assumes, of course, that atheism is a religion. That depends on how you define atheism and how you define religion – but it is mostly wrong. Atheism is a lack of belief in one particular supernatural claim – that does not qualify it as a religion.

But mutations are not “disorganizing” – that does not even make sense. It seems to be based on a purely creationist notion that species are in some privileged perfect state, and any mutation can only take them farther from that perfection. For those who actually understand biology, life is a kluge of compromises and variation. Mutations are mostly lateral moves from one chaotic state to another. They are not directional. But they do provide raw material, variation, for natural selection. Natural selection cannot generate variation, but it can select among that variation to provide differential survival. This is an old game played by creationists – mutations are not selective, and natural selection is not creative (does not increase variation). These are true but irrelevant, because mutations increase variation and information, and selection is a creative force that results in the differential survival of better adapted variation.

Even though he believes in his method, he ignores the huge body of evidence that shows radon gas is no more reliable than any other “predictor”.

If the victims insist on suing someone, they should leave the seismologists alone and look into the construction of some of those buildings. The stories out of L’Aquila suggest that the death toll was much higher because of official corruption and shoddy construction, as happens in many countries both before and after big quakes.

much of the construction is apparently Mafia-controlled in that area—good luck suing them! Sadly, the ancient medieval buildings that crumbled were the most vulnerable because they were made of unreinforced masonry, the worst possible construction material in earthquake country

what does this imply for scientists who are working in a field that might have predictive power? In a litigious society like Italy or the U.S., this is a serious question. If a reputable seismologist does make a prediction and fails, he’s liable, because people will panic and make foolish decisions and then blame the seismologist for their losses. Now the Italian courts are saying that (despite world scientific consensus) seismologists are liable if they don’t predict quakes. They’re damned if they do, and damned if they don’t. In some societies where seismologists work hard at prediction and preparation (such as China and Japan), there is no precedent for suing scientists for doing their jobs properly, and the society and court system does not encourage people to file frivolous suits. But in litigious societies, the system is counterproductive, and stifles research that we would like to see developed. What seismologist would want to work on earthquake prediction if they can be sued? I know of many earth scientists with brilliant ideas not only about earthquake prediction but even ways to defuse earthquakes, slow down global warming, or many other incredible but risky brainstorms—but they dare not propose the idea seriously or begin to implement it for fear of being sued.

She said she hoped that her conclusions would spark "a robust debate", since her finds are not only new, but would also touch the hearts of many religious people. She said: "Maybe I am even hurting myself. I consider myself to be religious and the Creator used to be very special, as a notion of trust. I want to keep that trust." A spokesman for the Radboud University said: "The new interpretation is a complete shake up of the story of the Creation as we know it." Prof Van Wolde added: "The traditional view of God the Creator is untenable now."

nhofe's battle against climate science kicked into overdrive when a series of illegally obtained emails surfaced from the Climatic Research Unit at East Anglia University. 

When the dubious reports surfaced about flawed science, manipulated data, and unsubstantiated studies, Inhofe was ecstatic.  In March, he viciously attacked former Vice President Al Gore for defending the science behind climate change

Unfortunately for Senator Inhofe, none of those things are true.  One by one, the pillars of evidence supporting the alleged "scandals" have shattered, causing the entire "Climategate" storyline to come crashing down. 

a panel established by the University of East Anglia to investigate the integrity of the research of the Climatic Research Unit wrote: "We saw no evidence of any deliberate scientific malpractice in any of the work of the Climatic Research Unit and had it been there we believe that it is likely that we would have detected it."

Responding to allegations that Dr. Michael Mann tampered with scientific evidence, Pennsylvania State University conducted a thorough investigation. It concluded: "The Investigatory Committee, after careful review of all available evidence, determined that there is no substance to the allegation against Dr. Michael E. Mann, Professor, Department of Meteorology, The Pennsylvania State University.  More specifically, the Investigatory Committee determined that Dr. Michael E. Mann did not engage in, nor did he participate in, directly or indirectly, any actions that seriously deviated from accepted practices within the academic community for proposing, conducting, or reporting research, or other scholarly activities."

London's Sunday Times retracted its story, echoed by dozens of outlets, that an IPCC issued an unsubstantiated report claiming 40% of the Amazon rainforest was endangered due to changing rainfall patterns.  The Times wrote: "In fact, the IPCC's Amazon statement is supported by peer-reviewed scientific evidence. In the case of the WWF report, the figure had, in error, not been referenced, but was based on research by the respected Amazon Environmental Research Institute (IPAM) which did relate to the impact of climate change."

The Times also admitted it misrepresented the views of Dr. Simon Lewis, a Royal Society research fellow at the University of Leeds, implying he agreed with the article's false premise and believed the IPCC should not utilize reports issued by outside organizations.  In its retraction, the Times was forced to admit: "Dr Lewis does not dispute the scientific basis for both the IPCC and the WWF reports," and, "We accept that Dr Lewis holds no such view... A version of our article that had been checked with Dr Lewis underwent significant late editing and so did not give a fair or accurate account of his views on these points. We apologise for this."

If, as Sacks argues, science is about the how and religion the why, then scientists are not authorities on religion at all. Hawking's opinions about God would carry no more weight than his taxi driver's. Believers and atheists should remove physicists from the front line and send in the philosophers and theologians as cannon fodder once again.

But is Sacks right? Science certainly trails a destructive path through a lot of what has traditionally passed for religion. People accuse Richard Dawkins of attacking a baby version of religion, but the fact is that there are still millions of people who do believe in the literal truth of Genesis, Noah's Ark and all. Clearly science does destroy this kind of religious faith, totally and mercilessly. Scientists are authorities on religion when they declare the earth is considerably more than 6,000 years old.

But they insist that religion is no longer, if it ever was, in the business of trying to come up with proto-scientific explanations of how the universe works. If that is accepted, science and religion can make their peace and both rule over their different magisteria, as the biologist Stephen Jay Gould put it.

People have been making a lot in the past few days of Hawking's famous sentence in A Brief History of Time: "If we discover a complete theory, it would be a triumph of human reason – for then we should know the mind of God."

Hawking's "mind of God" was never anything more than a metaphor for an understanding of the universe which is complete and objective. Indeed, it has been evident for some time that Hawking does not believe in anything like the traditional God of religion. "You can call the laws of science 'God' if you like," he told Channel 4 earlier this year, "but it wouldn't be a personal God that you could meet, and ask questions."

there is no room in the universe of Hawking or most other scientists for the activist God of the Bible. That's why so few leading scientists are religious in any traditional sense.

This point is often overlooked by apologists who grasp at any straw science will hold out for them. Such desperate clinging happened, disgracefully, in the last years of the philosopher Antony Flew's life. A famous atheist, Flew was said to have changed his mind, persuaded that the best explanation for the "fine-tuning"of the universe – very precise way that its conditions make life possible – was some kind of intentional design. But what was glossed over was that he was very clear that this designer was nothing like the traditional God of the Abrahamic faiths. It was, he clearly said, rather the Deist Deist God, or the God of Aristotle, one who might set the ball rolling but then did no more than watch it trundle off over the horizon. This is no mere quibble. The deist God does not occupy some halfway house between atheism and theism. Replace Yaweh with the deist God and the Bible would make less sense than if you'd substituted Brian for Jesus.

it is not true that science challenges only the most primitive, literal forms of religion. It is probably going too far to say that sciencemakes the God of Christianity, Judaism and Islam impossible, but it certainly makes him very unlikely indeed.

to think that their findings, and those of other scientists, have nothing to say about the credibility of religious faith is just wishful thinking. In the scientific universe, God is squeezed until his pips squeak. If he survives, then he can't do so without changing his form. Only faith makes it possible to look at such a distorted, scientifically respectable deity and claim to recognise the same chap depicted on the ceiling of the Sistine Chapel. For those without faith, that God is clearly dead, and, yes, science helped to kill him.

Ned, I feel it is both relevant and important enough to clarify given the statement in the article "Water vapor provides the most powerful feedback in the climate system. When surface temperature warms, this leads to an increase in atmospheric humidity." I feel that is not conveying a sense of the correct drivers that are most relevant to how water vapour enters the atmosphere in the first place. There is a need to be sure that the foundations any discussion is built upon are fully understood and solid.

Johnd, are you suggesting that the most solar radiation is absorbed by the skin of the ocean, rather than by layers beneathe the surface? The citation you refer to is for calculating evapotranspiration on land, where light does not penetrate beneathe the "skin", at least not far. Water is actually fairly transparent to light so the very thin "skin" accounts for little of the absorbance, although eventually most incoming light is absorbed at depth. The skin temperature of the ocean (where the vast majority of evaporation on earth happens) is largely a function of mixed water column temperature as a whole, which reflects the balance between inputs (solar radiation, incoming IR radiation) and outputs (outgoing IR radiation, evaporation, convection, mixing)of heat energy. As the earth's temperature increases that heat balance results in higher mixed layer temps, which leads to high skin temps and greater evaporation.

I also want to agree with Ned. This discussion of insolation and skin temperatures is a distraction. All other things being equal (insolation included), evaporation and water vapor should increase if the earth and atmosphere warm.